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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7640#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 959 fasta sequence
[CTTAACACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAA-AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCT-GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCAGCA-GGAAGCCGACAACTTACTTCATTAGGCATAAAGATGTGTAACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCTGCGACCACGCAGAAGAGCTGTAATTTATTAACAAAAAAAAAAAAAAAAAAAAAAGGCCCATG]
[+] EMBL CNS09DDB [ TTAACACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAA AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCT GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCA CAGGGAAGCCGACAACTTACTTCATTAGGCATAAAGATGTGT ACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCTGCGACCACGCAGAAGAGCTGTAATTTATTAACAAAAAAAAAAAAAAAAAAAAAAGGCCCATG]
[-] EMBL CNS09DDC [caaacCACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAAATCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGAACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGAAACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTA CTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGG TGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCT GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCAGCA GGAAGCCGACAACTTACTTCATTAGGCATAAAGATGTGTAACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCTGCGACCACGCAGAAGAGCTGTAATTT ]
[+] EMBL CNS09G87 [ CAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAA AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCG CATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGTGGCCTGGGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCC ]
[-] EMBL CNS09G88 [ GTTTTGGATGTTTTTCAGGGGGAAGTACGTCGGG TGCGCGGTTTCATCAAAACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGAACTGGTTGCGATGTACTCTAAGTGGACTATCTAAACAGGGTGGCCT GGGGGCGACACACCGGGGTTTCGGATGGACGGGGACGATCGTATGCGCCGATTATTATTAAATTTCATTCCTTTAGGACCGTCGGTGCTCCTTGGGGGACACTATGGCGCAGCA GGAAGCCGACCACTTACTTCATTAGGCATAAAGATGTGTAACTGAATTTGTTTAATATGAACGAATATATCTATAAACCCATC ]
[+] EMBL BX612140 [ TCATTCCTTTAGGAACGTCGGTGCTCCTTGGGGGAAACTATGGCGCAGCA GGAAGCCGAAAACTTACTTCATTAGGCATAAAGAAGTGTAACTGAATGTGTGTAATATGAACGAATATATCTATAAACCCATCTATGGACGCCGGCGACCACGCAGAAGAGCTGTA ]
consensusID : consensus_7640#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 954 fasta sequence
[CAGAATCGGCACAGGATTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGGTGGCCTGGGGGCGACANACCGGGGGTTTCGGATGGACGGGGACAGATCGTATGCGCCGATTATTTATTAAATTTGCATTCCTTTAGGGACCGTCGGTGCTCCTTGGGGGNACACTATGGCGCACAGGGAAGCCCGACAAACTTTACTTCATTTAGGCNCTAAAGATTTGTACCTCAATGTGTNGTAATAATGGAACCAATTTTTCTTTAAACCCATCTNTAGACNCTGTGACACACGCAAAAAACTGGTAACTTTTTTACAACAACAAACAGAACACAGGCATTTTGNGCCCAACTTTCC]
[+] EMBL BX466428 [CAGAATCGGCACAGGATTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCCCTGCATAGCGATACATCCGAAGATTTATCGCGCAACTCTGCCGAGATGGAACTGCTGCCCCCGATCAACTTTGCCGATGACAAATATCCGTACTGCATCGTCTGGACACCGATCCCGGTGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAACGGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGCCGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGGGACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGCGACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACCAACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTGCGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTTGCGATGTACTCTAAGTGGACTATCTAAGCAGGGGTGGCCTGGGGGCGACANACCGGGGGTTTCGGATGGACGGGGACAGATCGTATGCGCCGATTATTTATTAAATTTGCATTCCTTTAGGGACCGTCGGTGCTCCTTGGGGGNACACTATGGCGCACAGGGAAGCCCGACAAACTTTACTTCATTTAGGCNCTAAAGATTTGTACCTCAATGTGTNGTAATAATGGAACCAATTTTTCTTTAAACCCATCTNTAGACNCTGTGACACACGCAAAAAACTGGTAACTTTTTTACAACAACAAACAGAACACAGGCATTTTGNGCCCAACTTTCC]
consensusID : consensus_7640#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence
[CCCAGGCTTATCTACCGATTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAAACCACACCAAAACGTAATATGTCCTGCATAGACAGACNNTCCGAGGATTCATCGCGCAACGTCTGACGANCATGGATACTGATGTCCCCGATCAACTTTGCACGACTGACNAATATGCAGTAGCTGCATCGTATGANAAGCGNTNCCGGANGCATANGCATGTGTACTTGTCCCGGTAACAATCGGATCACCCAGCGAGTGCGTAACACTCGGCTAGTGTTCCAGACCGAGCCGGTGATCNCTCGTNCCTTTTTTGGCCCCGGGGNTCCCGCCACGACCCAGCGGTGCCTGGAATGTATCCCAGCGGAAGCGTATCAGACCCTAGTTGAGGCCCGGTAACATGTNCGCCGGTTCACCGGAAGCGAACGACATAGTNCGTGGGCGTTTTTGTTGACCCAGTTTCCCGGGGTCAGAANACGTNTACCGCTTGCCCGGGGTGTTGGCAATTCCCCAGGGCACGAACCATCGGGGCGGAATNTCC]
[+] EMBL AL697518 [CCCAGGCTTATCTACCGATTCGTTTATCCATTTTCTCTGCAAGAAAGTTAATTTTGTGCAACAAAAGTATACGATTGAAAACCACACCAAAACGTAATATGTCCTGCATAGACAGACNNTCCGAGGATTCATCGCGCAACGTCTGACGANCATGGATACTGATGTCCCCGATCAACTTTGCACGACTGACNAATATGCAGTAGCTGCATCGTATGANAAGCGNTNCCGGANGCATANGCATGTGTACTTGTCCCGGTAACAATCGGATCACCCAGCGAGTGCGTAACACTCGGCTAGTGTTCCAGACCGAGCCGGTGATCNCTCGTNCCTTTTTTGGCCCCGGGGNTCCCGCCACGACCCAGCGGTGCCTGGAATGTATCCCAGCGGAAGCGTATCAGACCCTAGTTGAGGCCCGGTAACATGTNCGCCGGTTCACCGGAAGCGAACGACATAGTNCGTGGGCGTTTTTGTTGACCCAGTTTCCCGGGGTCAGAANACGTNTACCGCTTGCCCGGGGTGTTGGCAATTCCCCAGGGCACGAACCATCGGGGCGGAATNTCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7640#0 CTTAACACAACAAAACAAATCTTTTTCTACCGATTTCGTTTATCCATTTTCTCTGCAAGA 60
consensus_7640#1 -----------------------------CAGAATCGG--CACAGGATTTCTCTGCAAGA 29
consensus_7640#2 ---------------CCCAGGCTTATCTACCGATTC-GTTTATCCATTTTCTCTGCAAGA 44
* ** * * * *************
consensus_7640#0 AAGTTAATTTTGTGCAA-AAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCC 119
consensus_7640#1 AAGTTAATTTTGTGCAACAAAAGTATACGATTGAAACCCACACCAAAACGTAATATGTCC 89
consensus_7640#2 AAGTTAATTTTGTGCAACAAAAGTATACGATTGAAAACCACACCAAAACGTAATATGTCC 104
***************** ****************** ***********************
consensus_7640#0 CTGCATAGCGATACAT-CCGAAGATTTATCGCGCAAC-TCTGCCGAG-ATGGA-ACTGCT 175
consensus_7640#1 CTGCATAGCGATACAT-CCGAAGATTTATCGCGCAAC-TCTGCCGAG-ATGGA-ACTGCT 145
consensus_7640#2 -TGCATAGACAGACNNTCCGAGGATTCATCGCGCAACGTCTGACGANCATGGATACTGAT 163
******* * ** **** **** ********** **** *** ***** **** *
consensus_7640#0 GCCCCCGATCAACTTTGC-CGA-TGACAAATATCC-GTA-CTGCATCGTCTGGACACCGA 231
consensus_7640#1 GCCCCCGATCAACTTTGC-CGA-TGACAAATATCC-GTA-CTGCATCGTCTGGACACCGA 201
consensus_7640#2 GTCCCCGATCAACTTTGCACGACTGACNAATATGCAGTAGCTGCATCGTATGANAAGCGN 223
* **************** *** **** ***** * *** ********* ** * **
consensus_7640#0 TCCCGG-TGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAAC 290
consensus_7640#1 TCCCGG-TGCTAACCTGGTTCTTCCCGTTCATCGGACACATGGGCATCGCCATGTCGAAC 260
consensus_7640#2 TNCCGGANGCATANGCATGTGTACTTGTCC--CGGTAACAATCGGATCACC-CAGCGAGT 280
* **** ** * * * * ** * *** *** * *** ** ***
consensus_7640#0 GGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGC 350
consensus_7640#1 GGCGTGATACGCGACTTTGCCGGGCCGTACTTCGTGTCGGAGGACAATATGGGGTTTGGC 320
consensus_7640#2 G-CGTAACACTCGGCTA----GTGTTCCAGACCGAGCCGGTGATCNCT-CGTNCCTTTTT 334
* *** * ** ** ** * * * ** * *** * * * * **
consensus_7640#0 CGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGG 410
consensus_7640#1 CGGCCGACACGCTACCTGCGGCTGCATCCGGCGAACGCGTTCGGCGGCACCCAGAACTGG 380
consensus_7640#2 TGGCCC-CGGGGNTCCCGCCACGAC--CCAGCGG-TGCCTGGAATGTATCCCAG--CGGA 388
**** * * ** ** * * ** *** ** * * ***** * *
consensus_7640#0 GACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGC 470
consensus_7640#1 GACGAATCGGTAATCAAAGCGTCGGCCACGTACGGTGCGCGAATGCACAACCTGTTTTGC 440
consensus_7640#2 AGCGTATCAG--ACCCTAGTTGAGGCCCGGTAACATGTNCGCCGGTTCACCG------GA 440
** *** * * * ** **** *** ** ** * ** * *
consensus_7640#0 GACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACC 530
consensus_7640#1 GACAACTGCCATTCGCACGTGGGCATGGCGCTGGCCCTGATGCGCTACAAAGAGTACACC 500
consensus_7640#2 AGCGAACGACATA-GTNCGTGGGCGTTTTTGTTGACCCAGTTTCCCGGGGTCAGAANAC- 498
* * * *** * ******* * * * ** * * ** * **
consensus_7640#0 AACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTG 590
consensus_7640#1 AACTGGAACATGGTGGTGCTGGCGTTTTGGATGTTTTTCAGGGGCAAGTACGTCGGGCTG 560
consensus_7640#2 -----GTNTACCGCTTGCCCGGGGTGTTGGCAATTCCCCAGGGCACGAACCATCGGG--G 551
* * * * ** ** **** ** ***** * ***** *
consensus_7640#0 CGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTT 650
consensus_7640#1 CGCGGTTTCATCAAGACTTGGCTGCCGTTCCTAATTATACTGACTATTTGCGCACTGGTT 620
consensus_7640#2 CGGAATNTCC-------------------------------------------------- 561
** * **
consensus_7640#0 GCGATGTACTCTAAGTGGACTATCTAAGCAGGG-TGGCCTGGGGGCGACACACCGGGG-T 708
consensus_7640#1 GCGATGTACTCTAAGTGGACTATCTAAGCAGGGGTGGCCTGGGGGCGACANACCGGGGGT 680
consensus_7640#2 ------------------------------------------------------------
consensus_7640#0 TTCGGATGGACGGGGAC-GATCGTATGCGCCGATTATT-ATTAAATTT-CATTCCTTTAG 765
consensus_7640#1 TTCGGATGGACGGGGACAGATCGTATGCGCCGATTATTTATTAAATTTGCATTCCTTTAG 740
consensus_7640#2 ------------------------------------------------------------
consensus_7640#0 G-ACCGTCGGTGCTCCTTGGGGGA-CACTATGGCGCAGCAGGAAGCC-GACAA--CTTAC 820
consensus_7640#1 GGACCGTCGGTGCTCCTTGGGGGNACACTATGGCGCACAGGGAAGCCCGACAAACTTTAC 800
consensus_7640#2 ------------------------------------------------------------
consensus_7640#0 TTCATT-AGGCA-TAAAGATGTGTAACTGAATGTGTG-TAATAT--GAACGAATATATCT 875
consensus_7640#1 TTCATTTAGGCNCTAAAGATTTGTACCTCAATGTGTNGTAATAATGGAACCAATTTTTCT 860
consensus_7640#2 ------------------------------------------------------------
consensus_7640#0 ATAAACCCATCTATGGACGCCTGCGAC-CACGCAGAAGAGCTGTAATTTATTAACAAAAA 934
consensus_7640#1 TTAAACCCATCTNTAGACNC-TGTGACACACGCAAAAAACTGGTAACTTTTTTACAACAA 919
consensus_7640#2 ------------------------------------------------------------
consensus_7640#0 AAAAAAAAAAAAAAAAA-----GGCCCATG----- 959
consensus_7640#1 CAAACAGAACACAGGCATTTTGNGCCCAACTTTCC 954
consensus_7640#2 -----------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||