These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7643#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 987 fasta sequence [TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCGTTCTTTTGGC-TGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGCTTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCGGCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCGCTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTGAAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACGCTGCTGAACGCG-AGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGCATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTTCTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCATATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGTATAAACAATAAATTCGACGGCCCACGA] [+] EMBL AGA280844 [TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGTTTGCCCTGACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCGTTCTTTTGGC TGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTC ] [+] EMBL CNS09MSG [ aTTTTTGCGATCAACTCCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCCTTCTTTTGGCGTGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGta ] [+] EMBL AL932744 [ ccgcaggttACT AAAAACA TGTTTTCCGCCCAAAACTTTGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTGATTGCTGCATCGTTCTTTTGGC TGGTATCGTTGCTACTTTCGTCAACCGTGTGGTTAGCATTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAAGGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGCTTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCG ] [+] EMBL AGA280185 [ TAATTTGGCGAAGCGAGAAGTGATATAATTTAGCTATGAACATGACTGTACTGGCATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACG ] [-] EMBL AGA282472 [ CGCAAGACGGAAAGTGGCCTGCAGGAGGTGACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGCTTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCGGCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCGCTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTGAAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACGCTGCTGAACGCG AGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGCATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTTCTCACGTGCAAG ] [-] EMBL CNS09MSH [ CGTGGTGGAAAGCCATCTGTTCGTTTCCTGCATGACGCTGCTGAACGCGAAGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGCATAACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTTCTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCATATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGTATAAACAATAAATTCGACGGCCCACGA] consensusID : consensus_7643#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 191 fasta sequence [CGCGTCCGCCCACGCGTCCGCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGCTTGCCCTGACGATAGCGCACGATCCGATCCG] [+] EMBL BM651737 [CGCGTCCGCCCACGCGTCCGCAAAACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATATAATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGGCCACCGGTGGCTATGCTTGCCCTGACGATAGCGCACGATCCGATCCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7643#0 TTTTTTTTGCGATCAACTTCACTGAAACAATCAACTAAAAAACATTGTTTTCCGCCCAAA 60 consensus_7643#1 ------------------------------------CGCGTCCGCCCACGCGTCCGCAAA 24 * * **** consensus_7643#0 ACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATAT 120 consensus_7643#1 ACTTGGTGCACGTGAGGCACGCGGCAGTGTGGCATAATTTGGAGAAGCGAGAAGTGATAT 84 ************************************************************ consensus_7643#0 AATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGG 180 consensus_7643#1 AATTTAGCTAGGAACATGACGGTGGTGGAATTTTTCGGCTGCAGCTTTCTAGCGTTCGGG 144 ************************************************************ consensus_7643#0 CCACCGGTCGCTATGTTTGCCCTCACGATAGCGCACGATCCGATCCGCATTATCATCCTG 240 consensus_7643#1 CCACCGGTGGCTATGCTTGCCCTGACGATAGCGCACGATCCGATCCG------------- 191 ******** ****** ******* *********************** consensus_7643#0 ATTGCTGCATCGTTCTTTTGGCTGGTATCGTTGCTACTTTCGTCAACCGTTTGGTTAGCA 300 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 TTCCATCCCGTCACCTCAAAGGTTACCTTCGGGTTGATATGCTCCGTTTTCATTCAGGAA 360 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 GGATTCCGCTACCTGATGTACAAGGTACTCCGCAAGACGGAAAGTGGCCTGCAGGAGGTG 420 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 ACGGACATCGTGCGCATTGCCGACTATCGACACATTCTTTCGTACGCTTCCGGGTTGGGC 480 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 TTTGGCATCATCAGTGGAGCATTTTCCCTGGTCAACATTCTGGCGGACTCGGTCGGACCG 540 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 GCAACGGTGGGGCTGAAGGCGGCCTCGGACATCTTCATGCTGATCAGTGCCGCCCAATCG 600 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 CTCGCCATGATCCTGCTGCACACCTTCTGGAGCGTCATCTTCTTCAATGCTTGCGATGTG 660 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 AAGAATTACTACCACATCGGCTACGTTGTGGCAAGCCATCTGTTCGTTTCCTGCATGACG 720 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 CTGCTGAACGCGAGCGGCCTGTACGCCGTCACGCTGCTCATTTCGTACACGATGGTCTGC 780 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 ATCACTGGCGCGATAGCGTTCCAGGTGGCCGGCGGTACCGTCGCATCCTTCCGAAAGTTT 840 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 CTCACGTGCAAGTGAAATTCCAAAACACAACTTCGTGTACATCTTAGCGATAGTTTACCA 900 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 TATTTATAAATCCATTTTATGTATCTGTTTCTCACATATGCATTATAACCTTTCTTTCGT 960 consensus_7643#1 ------------------------------------------------------------ consensus_7643#0 ATAAACAATAAATTCGACGGCCCACGA 987 consensus_7643#1 --------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||