These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7644#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 823 fasta sequence [GCAAGAATCGGCACGATGTGAGAGACAGAGGAGGTGTGAGACGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTGTTTNTTTTGTTTNAGTATATTGGGGTTTGTTATGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAAGCATATTAGCTTTTTAGGTTTAATTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTNACGGCAACAGTTACTGCTTAGTGAATGATGTTNGCGTTGGATGTTGTGGACCAGTTATGGAGTTGATAATCGTGACCGGGTCGTTCGGCATTTGTGCGGGNGCGAGTCCCNAGGTGGCAAGATANAGTGCAAAGGCCAGGGANTGCCTNTAGGCCCTTTTGCCGTCTGGCNCGCAGAAGTTGGGCCCGANAGGGCACCGCCATTTTTGGGAAGCNGCCGTAAGGGCGGCCGTTTGNGGNGGGTTACTCGATCTCCAAGGGGGCCGAAGAGAACAGAACGGGGGCCCAGGGCGGNGGCAGTTTGAGAGNTGCCGGGAAG] [+] EMBL BX468168 [GCAAGAATCGGCACGATGTGAGAGACAGAGGAGGTGTGAGACGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTGTTTNTTTTGTTTNAGTATATTGGGGTTTGTTATGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAAGCATATTAGCTTTTTAGGTTTAATTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTNACGGCAACAGTTACTGCTTAGTGAATGATGTTNGCGTTGGATGTTGTGGACCAGTTATGGAGTTGATAATCGTGACCGGGTCGTTCGGCATTTGTGCGGGNGCGAGTCCCNAGGTGGCAAGATANAGTGCAAAGGCCAGGGANTGCCTNTAGGCCCTTTTGCCGTCTGGCNCGCAGAAGTTGGGCCCGANAGGGCACCGCCATTTTTGGGAAGCNGCCGTAAGGGCGGCCGTTTGNGGNGGGTTACTCGATCTCCAAGGGGGCCGAAGAGAACAGAACGGGGGCCCAGGGCGGNGGCAGTTTGAGAGNTGCCGGGAAG] consensusID : consensus_7644#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 789 fasta sequence [CCGGAGGAAGAAGATAAAAGAGAGAGACAGAGGAGGTGTGAGAGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGATCCCAGTGGCAGTTGTGCAAGGCCGGATGCCTTTTTCCTTTCCTTGCAAATGCCAGCCCCTTGGACGCTAGCGCGTGGGGTTTTTCAGGCAGACGAGGCCAGCAGCATGATCGAAAGAAGTTTGCAAACGCTTTCCCTGCTCGCTAGCCGTTTTCTACTAAGTAGTACCTNCCTATAATCATTACTGCNAACTGCT] [+] EMBL BM640665 [CCGGAGGAAGAAGATAAAAGAGAGAGACAGAGGAGGTGTGAGAGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGATCCCAGTGGCAGTTGTGCAAGGCCGGATGCCTTTTTCCTTTCCTTGCAAATGCCAGCCCCTTGGACGCTAGCGCGTGGGGTTTTTCAGGCAGA ] [+] EMBL BM637303 [ ccgAGAGAGAGACAGAGGAGGTGTGAGAGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGATCCCAGTGGCAGTTGTGCAAGGCCGGATGCCTTTTTCCTTTCCTTGCAAATGCCAGCCCCTTGGACGCTAGCGCGTGGGGTTTTTCAGGCAGACGAGGCCAGCAGCATGATCGAAAGAA ] [+] EMBL BM591515 [ ccgGAGAGACAGAGGAGGTGTGAGAGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCGACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGGTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCAATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGGAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAAGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGATCCCAGTGGCAATTGTGCAAGGCCGGATGCCTTTTTCCTTTCCTTGCAAATGC ] [+] EMBL BM608889 [ ccgGAGAGACAGAGGAGGTGTGAGAGAAGCAGTAAGACAGAGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGA ] [+] EMBL BX623151 [ AGAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGATAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGATCCCAGTGGCAGTTGTGCAAGGCCGGATGCCTTTTTCCTTTCCTTGCAAATGCCAGCCCCTTGGACGCTAGCGCGTGGGGTTTTTCAGGCAGACGAGGNCAGCAGCATGATCGAAAGAAGTTTGCAAACGCTTTCCCTGCTCGCTAGCCGTTTTCTACTAAGTAGTACCTNCCTATAATCATTACTGCNAACTGCT] [+] EMBL BX624934 [ CGACGACTCCAACAACGCTCACAATGCCGGGTATGTTAGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCTCGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAATTAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAGTAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGA TTTTTTTTTTGTTTTTTTTGGGGTTTGTTTGTAAACAAGGTCTAGAAGCCTAACGTGTTAAAACATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACACATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTTGCGTTTATTTTTGGACCAGTTTTGATTGATAATCGTGCCGGTGTTGGCATTGTGCGGGGCGATCCCAGTGGCAGTTGTGCAAGGCCGGATGCCTTTTTCCTTTCCTTGCAAATGCCAGCCCCTTGGACGCTAGCGCGTGGGGTTTTT ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7644#0 --GCAAGAATCGGCACGATGTGAGAGACAGAGGAGGTGTGAGACGAAGCAGTAAGACAGA 58 consensus_7644#1 CCGGAGGAAGAAGATAAAAGAGAGAGACAGAGGAGGTGTGAGA-GAAGCAGTAAGACAGA 59 * * *** * * * ********************** **************** consensus_7644#0 GAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTT 118 consensus_7644#1 GAGGAGAGAGAGAGAGGGTGTGTCGACGACTCCAACAACGCTCACAATGCCGGGTATGTT 119 ************************************************************ consensus_7644#0 AGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCT 178 consensus_7644#1 AGTGGCACACATGACCTTGGGTTTATTTTCTTTTATTTTTTTTTATTTTTGCCTTTTGCT 179 ************************************************************ consensus_7644#0 CGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAAT 238 consensus_7644#1 CGTTATACATCTACATGGAGAGAAACCACAGGCGGAGAGAGAGAGAGAGAGAGCGACAAT 239 ************************************************************ consensus_7644#0 TAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAG 298 consensus_7644#1 TAGCATAAACCAGTAGGGTAGGAAGAACAGAGGAGGACTTTCGATTCGGGCGGGGTAGAG 299 ************************************************************ consensus_7644#0 TAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTTGTTTNT 358 consensus_7644#1 TAGGAAGATAGGTGTAAGGTACAGATGATGAAAAAACTAATAGTTCCTGATTTT--TTTT 357 ****************************************************** ** * consensus_7644#0 TTTGTTTNAGTATATTGGGGTTTGTTATGTAAACAAGGTCTAGAAGCCTAACGTGTTAAA 418 consensus_7644#1 TTTGTTTT----TTTTGGGGTTTGTT-TGTAAACAAGGTCTAGAAGCCTAACGTGTTAAA 412 ******* * ************ ********************************* consensus_7644#0 AGCATATTAGCTTTTTAGGTTTAATTTTACGTATATAGAAAATATCCTATCGGATGCACA 478 consensus_7644#1 A-CATATTAGCTTTTTAGGTTTTTTTTTACGTATATAGAAAATATCCTATCGGATGCACA 471 * ******************** ************************************ consensus_7644#0 CATCCGCCATTACAATTAGCGTAGGTNACGGCAACAGTTACTGCTTAGTGAATGATGTTN 538 consensus_7644#1 CATCCGCCATTACAATTAGCGTAGGTTACGGCAACAGTTACTGCTTAGTGAATGATGTTT 531 ************************** ******************************** consensus_7644#0 GCGTTGGATGTTGTGGACCAGTTATGGAGTTGATAATCGTGACCGGGTCGTTCGGCATTT 598 consensus_7644#1 GCGTTTATTTTTG--GACCAGTTTTGA--TTGATAATCGTGCCGGTGT----TGGCATT- 582 ***** * *** ******** ** ************ * * ** ****** consensus_7644#0 GTGCGGGNGCGAGTCCCNAGGTGGCAAGATANAGTGCAAAGGCCAGGGANTGCCTNTAGG 658 consensus_7644#1 GTGCGGGG-CGA-TCCCA--GTGGCAG----TTGTGCAAGGCCGGATGCCTTTTTCCTTT 634 ******* *** **** ****** ****** * * * * * consensus_7644#0 CCCTTTTGCCGTCTGGCNCGCAGAAGTTGG-GCCCGANAGGGCACCGCCATTTTTGGGAA 717 consensus_7644#1 CCTTGCAAATGCCAGCCCCTTGGACGCTAGCGCGTGGGGTTTTTCAGGCAGACGAGGCCA 694 ** * * * * * * ** * * * ** * * * ** ** * consensus_7644#0 GCNGCCGTAAGGGCGGCCGTTTGNGGNGGGTTACTC-GATCTCCAAGGGGGCCGAAGAGA 776 consensus_7644#1 GCAGCATGATCGAAAGAAGTTTGCAAACGCTTTCCCTGCTCGCTAGCCGTTTTCTACTAA 754 ** ** * * * ***** * ** * * * ** * * * * * consensus_7644#0 ACAGAACGGGGGCCCAGGGCGGNGGCAGTTTGAGAGNTGCCGGGAAG 823 consensus_7644#1 GTAGTACCT--NCCTATAATCATTAC----TGCNAACTGCT------ 789 ** ** ** * * ** * *** |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||