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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7645#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 665 fasta sequence
[CNGGCACGAGGTGCCACATGTAGACAGACGTGCGCGTGCGTATGTGTGTTTGTTTAGCCCATTCGACAGCCGACAGCCGGGGCGGAGACACACGGAGACACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAGCCTTATCGGGGGGATGCGCGTGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT-CAGCAAGATTCGCGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATCACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCAGCTGG--CCGACCTGCTGCCGGACGAGCCCGGCGGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGTACGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCAGAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAGCGTGGTCGACACGATAGCGGC]
[+] EMBL BX619413 [CNGGCACGAGGTGCCACATGTAGACAGACGTGCGCGTGCGTATGTGTGTTTGTTTAGCCCATTCGACAGCCGACAGCCGGGGCGGAGACACACGGAGACACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAGCCTTATCGGGGGGATGCGCGTGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCTCCAGCAAGATTCGCGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATCACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCCCCCGCCAGCTGGNCCCGACCTGCTGCCGGACGAGCCCGGCGGCGGTG ]
[+] EMBL BM656293 [ CCGCA GTAGACAGACGTGCGCGTGCGTATGTGTGTTTGTTTAGCCCATTCGACAGCCGACAGCCGGGGCGGAGACACACGGAGACACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGCCTGTACGACAAGCCTTATCGGGGGGATGCGCGCGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT CAGCAAGATTCGCGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATCACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCAGCTGG CCGACCTGCTGCCGGACGAGCCCGGCGGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGTACGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCAGAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAGCGTGGTCGACACGATAGCGGC]
[+] EMBL BX615629 [ tgtgccTGTTTGTTTGTTTAGCCCATCCGACAGCCGACAGCCGGGGCGGAGACACACGGAGATACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACG CTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGCCTGTACGACAAGCCTTATCGGGGGGATGCGCGCGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT CAGCAAGATTCGCGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATTACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCATCTGG CCGACCTGCTGCCGGACGAGCCCGGCAGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGT CGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAACCAGGGCGGCTGCGGTGCC ]
[+] EMBL CNS08LBA [ TGTGTGTTTGTTTAGCCCATTCGACAGCCGACAGCCGGGGCGGAGACACACGGAGACACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAGCCTTATCGGGGGGATGCGCGTGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT CAGCAAGATTCGCGCGCTGAACGAGTGGGC ]
consensusID : consensus_7645#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGACGGAGACACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAGCCTTATCGGGGGGATGCGCGCGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCTCAGCAAGATTCGTGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATCACGCAGTACGCCGACCTCACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGACCTGCTGCCGGACGAGCCCGGCGGCGGTGCGGGCGGACCGCGCGCCTACCAGAAGTACGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAGCGTGGTCGACACGATAGCGGCACTGGCCGCGATCCAGCGCAACGATCGCAAGCTGATCGACCTGTGCCACGAGCGGGGTG]
[+] EMBL BM644941 [CCGCCCACGCGTCCGCCCACGCGTCCGACGGAGACACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAGCCTTATCGGGGGGATGCGCGCGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCTCAGCAAGATTCGTGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATCACGCAGTACGCCGACCTCACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGACCTGCTGCCGGACGAGCCCGGCGGCGGTGCGGGCGGACCGCGCGCCTACCAGAAGTACGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAGCGTGGTCGACACGATAGCGGCACTGGCCGCGATCCAGCGCAACGATCGCAAGCTGATCGACCTGTGCCACGAGCGGGGTG]
consensusID : consensus_7645#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 622 fasta sequence
[CCGGTTTGTTTAGCCCATCCGACAGCCGACAGCCGGGGCGGAGACACACGGAGATACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGCCTGTACGACAAGCCTTATCGGGGGGATGCGCGCGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCTCAGCAAGATTCGCGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATTACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGACCTGCTGCCGGACGAGCCCGGCAGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGTACGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATTGGGTATGTGTGTCTGAGTGAATGTTGTGTGTCTGTGTGTGGGTGTGTGGAATTGAGTTGATCTGTGGCATTTTCTGCTTCTGGTTGTGT]
[+] EMBL BM615048 [CCGGTTTGTTTAGCCCATCCGACAGCCGACAGCCGGGGCGGAGACACACGGAGATACCATGACGGAAGTGATCGAGATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAGCCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGCCTGTACGACAAGCCTTATCGGGGGGATGCGCGCGAGTACGCGTACCGGTTCCAGATCTTCCGCACGTCGCTCAGCAAGATTCGCGCGCTGAACGAGTGGGCCCGCGAGGCGAACGATACCGCGATCTACGGCATTACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGACCTGCTGCCGGACGAGCCCGGCAGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGTACGTGATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATTGGGTATGTGTGTCTGAGTGAATGTTGTGTGTCTGTGTGTGGGTGTGTGGAATTGAGTTGATCTGTGGCATTTTCTGCTTCTGGTTGTGT]
consensusID : consensus_7645#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 391 fasta sequence
[AGAATTCGCCACGAGGTGTATAAGTACGTGATCGAGTCGCGCANCGCGGAGATAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCATAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAGCGTGGTCGACACGATAGCGGCACTGGCCGCGATCAAGCGCAACGATCGCAAGCTGATCGACCTGTGCCACGAGCGGGTGGTGCGCTGCGCCGCGAACGGTAACAATGGGTGCGACGGTGGCGACACCTGCCGCGCTGCTGGAATGGTTGGCGGCAGGAAAGCTACCGGATCGGGGCGGCCGAATCCTGCCTGGAG]
[+] EMBL BX468998 [AGAATTCGCCACGAGGTGTATAAGTACGTGATCGAGTCGCGCANCGCGGAGATAAGAACGACATCATATTCTCGCGCGCTCGTCGCGATGCGCTGCCGGCGGTGCGCAATCTACCGCATAGAGTTGATTGGCGGGAGCAGGGCGTCATCTCGACGGTGAAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAGCGTGGTCGACACGATAGCGGCACTGGCCGCGATCAAGCGCAACGATCGCAAGCTGATCGACCTGTGCCACGAGCGGGTGGTGCGCTGCGCCGCGAACGGTAACAATGGGTGCGACGGTGGCGACACCTGCCGCGCTGCTGGAATGGTTGGCGGCAGGAAAGCTACCGGATCGGGGCGGCCGAATCCTGCCTGGAG]
consensusID : consensus_7645#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 304 fasta sequence
[CAGAATCGCCACGAGGTNTACTGGCCGNAATCAAGCGCAACGATCAGCAAGCTGATCGACCTGTGCCACGAGCGGGTGTGCGCTGCTGCCGCGAACGGTAACACATGGGTGCGACGGTGCGACACCTGCCGCCTGCTGGAATGGTTAGGCGGAGGAAAGCTACCGGATCGGGGCGGCCGAATCCGTGCCTGGAGCGGAACCTGGCGGACCAGAGAGGGTGGGCTGAACTGTACGGGCGAGGTTCGGGCGTTCGGCGGGAGGACGGTGCGTTGAATGCGACGCTAGTGAAGCGGTTTCTCCTGGC]
[+] EMBL BX469170 [CAGAATCGCCACGAGGTNTACTGGCCGNAATCAAGCGCAACGATCAGCAAGCTGATCGACCTGTGCCACGAGCGGGTGTGCGCTGCTGCCGCGAACGGTAACACATGGGTGCGACGGTGCGACACCTGCCGCCTGCTGGAATGGTTAGGCGGAGGAAAGCTACCGGATCGGGGCGGCCGAATCCGTGCCTGGAGCGGAACCTGGCGGACCAGAGAGGGTGGGCTGAACTGTACGGGCGAGGTTCGGGCGTTCGGCGGGAGGACGGTGCGTTGAATGCGACGCTAGTGAAGCGGTTTCTCCTGGC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7645#0 CNGGCACGAGGTGCCACATGTAGACAGACGTGCGCGTGCGTATGTGTGTTTGTTTAGCCC 60
consensus_7645#2 --------------------------------------------CCGGTTTGTTTAGCCC 16
consensus_7645#1 ------------------------------------------------------CCGCCC 6
consensus_7645#3 ------------------------------------------------------------
consensus_7645#4 ------------------------------------------------------------
consensus_7645#0 ATTCGACAGCCGACAGCCGGGGCGGAGACACACGGAGACACCATGACGGAAGTGATCGAG 120
consensus_7645#2 ATCCGACAGCCGACAGCCGGGGCGGAGACACACGGAGATACCATGACGGAAGTGATCGAG 76
consensus_7645#1 ACGCGTCCGCCCAC----------GCGTCCGACGGAGACACCATGACGGAAGTGATCGAG 56
consensus_7645#3 ------------------------------------------------------------
consensus_7645#4 ------------------------------------------------------------
consensus_7645#0 ATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAG 180
consensus_7645#2 ATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAG 136
consensus_7645#1 ATGCTGATGATCATACTGATCGTTACGCTCTGCTTCCTGATGATCCCGTTCAACACGAAG 116
consensus_7645#3 ------------------------------------------------------------
consensus_7645#4 ------------------------------------------------------------
consensus_7645#0 CCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAG 240
consensus_7645#2 CCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGCCTGTACGACAAG 196
consensus_7645#1 CCGAGTGCGGTGATCGAGTCGCGGCGCAAGTTCGACGTGTTCGTGCGGCTGTACGACAAG 176
consensus_7645#3 --------AGAATTCGCCACGAGGTGTATAAGT-ACGTGATCGAGTCGCGCANCGCGGAG 51
consensus_7645#4 ------------------------------------------------------------
consensus_7645#0 CCTTATCGGGGGGATGCGCGTGAG-TACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT 299
consensus_7645#2 CCTTATCGGGGGGATGCGCGCGAG-TACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT 255
consensus_7645#1 CCTTATCGGGGGGATGCGCGCGAG-TACGCGTACCGGTTCCAGATCTTCCGCACGTCGCT 235
consensus_7645#3 ----ATAAGAACGACAT-CATATT-CTCGCGCGCTCGTCGC-GATGCGCTGC-CGGCGGT 103
consensus_7645#4 ---------CAGAATCGCCACGAGGTNTACTGGCCGNAATCAAGCGCAACGATCAGCAAG 51
* * * * * * * *
consensus_7645#0 CAGCAAGATTCGCGCGCTGAACGAGTGGGC-CCGC-GAGGCGAACGATACCGCGATC-TA 356
consensus_7645#2 CAGCAAGATTCGCGCGCTGAACGAGTGGGC-CCGC-GAGGCGAACGATACCGCGATC-TA 312
consensus_7645#1 CAGCAAGATTCGTGCGCTGAACGAGTGGGC-CCGC-GAGGCGAACGATACCGCGATC-TA 292
consensus_7645#3 GCGCAATCTAC-CGCATAGAGTTGATTGG---CGG-GAGCAGGGCGTCATCTCGACGGTG 158
consensus_7645#4 CTGATCGACCTGTGCCACGAGCGGGTGTGCGCTGCTGCCGCGAACGGTAACACATGGGTG 111
* ** ** * * * * * ** * * * *
consensus_7645#0 CGGCATCACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGA 416
consensus_7645#2 CGGCATTACGCAGTACGCCGACCTGACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGA 372
consensus_7645#1 CGGCATCACGCAGTACGCCGACCTCACCGATCGGGAATTCGTCGCCCGCCAGCTGGCCGA 352
consensus_7645#3 AAGAATCAGGGCGGCTGCGGTGCCTGCTGGGCGATCAG-CGTGGTCGACACGATAGCGGC 217
consensus_7645#4 CGACGGTGCGACACCTGCCG-CCTGCTGGAATGG---TTAGGCGGAGGAAAGCTACCGGA 167
* ** * * * * * * * * * *
consensus_7645#0 CCTGCTGCCGGACGAGCCCGGCGGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGTACGT 476
consensus_7645#2 CCTGCTGCCGGACGAGCCCGGCAGCGGTGCGGGAGGGCCGCGCGCCTACCAGAAGTACGT 432
consensus_7645#1 CCTGCTGCCGGACGAGCCCGGCGGCGGTGCGGGCGGACCGCGCGCCTACCAGAAGTACGT 412
consensus_7645#3 ACTGGCCGCGATCAAGCGCAACGAT--CGCAAGCTGATCG-ACCTGTGCCACGAGCGGGT 274
consensus_7645#4 TCGG--GGCGGCCGAATCCGTGCCTGGAGCGGAA---CCTGGCG--GACCAGAGAGGGTG 220
* * ** * * * ** * * ***
consensus_7645#0 GATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGA 536
consensus_7645#2 GATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGA 492
consensus_7645#1 GATCGAGTCGCGCAGCGCGGAGATGAAGAACGACATCATATTCTCGCGCGCTCGTCGCGA 472
consensus_7645#3 GGT-GCGCTGCGCCGCG-AACGGTAACAATGGGTGCGACGGTGGCG-ACACCTGCCGCGC 331
consensus_7645#4 GGCTGAACTGTACGG-GCGAGGTTCGGGCGTTCGGCGGGAGGACGGTGCGTTGAATGCGA 279
* * * * * * * * * * ***
consensus_7645#0 TGC----GCTGCCGGCGGTGCGCAATCTACCGCAGAGAGTTGATTGGCGGGAGCAGGGCG 592
consensus_7645#2 TGC----GCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATT----GGGTATGTGTG 544
consensus_7645#1 TGC----GCTGCCGGCGGTGCGCAATCTACCGCCGAGAGTTGATTGGCGGGAGCAGGGCG 528
consensus_7645#3 TGCTGGAATGGTTGGCGGCAGGAAAGCTACCGGATCGGGGCGGCCGAATCCTGCCTGGAG 391
consensus_7645#4 CGC---------TAGTGAAGCGGTTTCTCCTGGC-------------------------- 304
** * * * ** * *
consensus_7645#0 TCATCTCGACGGTGAAGAATCAGGGCGGCTGCG-GTGCCTGCTGGGCGATCAGCGTGGTC 651
consensus_7645#2 TCTGAGTGAATGTTGTGTGTCTGTGTGTGGGTGTGTGGAATTGAGTTGATCTGTGGCATT 604
consensus_7645#1 TCATCTCGACGGTGAAGAATCAGGGCGGCTGCG-GTGCCTGCTGGGCGATCAGCGTGGTC 587
consensus_7645#3 ------------------------------------------------------------
consensus_7645#4 ------------------------------------------------------------
consensus_7645#0 GACACGATAGCGGC---------------------------------------------- 665
consensus_7645#2 TTC-TGCTTCTGGTTGTGT----------------------------------------- 622
consensus_7645#1 GACACGATAGCGGCACTGGCCGCGATCCAGCGCAACGATCGCAAGCTGATCGACCTGTGC 647
consensus_7645#3 ------------------------------------------------------------
consensus_7645#4 ------------------------------------------------------------
consensus_7645#0 -------------
consensus_7645#2 -------------
consensus_7645#1 CACGAGCGGGGTG 660
consensus_7645#3 -------------
consensus_7645#4 -------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||