These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7660#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1832 fasta sequence [ACGCGTCCGGAACAATTGCCGCGATGCTTTAACACAACTCTTTTCGGGCGCTCATTGCAGTAGAATGAGGGTTGTTTTGATTGATAGAGTAACTAGCAAATAGCTTTCTTGTTTGTTTTTTTTTTTTTTTGTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACTCTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGAAAACGATCAACAAAGGTTGACTCGAATCGAGTGAATTGCAAACAAC-----AAGAGCATAATTTGCATCTGTTTGTTTGACAGAAATGCAAGAAACATGTGAAAACGGT-AAAAAAACAGGGGAAGGAAAAATAACCGATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAATATAAAACCCTTACAAAAGGAAGCAAACGTGGACACTGCAAGATGAAGATTAAAACCCATATCGTGTTAAGAAATTTAGCAAAACAACAACAAAAACATATCGTGTGCAATTTTCATGCTGAGAGCAACCTGTTGAGGGAAAATTACAAACCTGTTTCGTTTATCTTCCCCATACTTCTTTCGGAACAAACGGACATCGGCATCATAAACAACCACACACACACACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGA----GACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTCTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAAACAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAA-GACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAG--------AGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCTTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTTTCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTGACTATTCTTAATTCGGGTTACTGCAAACCTGGGTACATATTGCAAACGAGTACAGTGTGCAGTACGCGATGTTGGTGGTGGCTGAATCTTTCTAAATGGCTGGGGTCGACACTACACTGAAGCAAAGTATTTTGGATGTTATAATGGGGCTTTACGCTGAAAATTTAAAATACTTAAGTGAAACGTAAGTGCCAAAAATAAGTAAAAATAAATAGGAAATAGCCAGAGATAGAAAAACAAATGTGAGATAATAGCAGGGTGTATGACGAATAAGGAAGGAATAATGGATTACAGCGTTTGACTGAAACTCCTTCGGCTCCGGGATGATCTATTCTTGCCCTTGATATGCCCCACCCAGTTAATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTTGACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGAATGACATGTTATTGGTTGAACAATTAGTGTAGTCATA] [+] EMBL BM628730 [ACGCGTCCGGAACAATTGCCGCGATGCTTTAACACAACTCTTTTCGGGCGCTCATTGCAGTAGAATGAGGGTTGTTTTGATTGATAGAGTAACTAGCAAATAGCTTTCTTGTTTGTTTTTTTTTTTTTTTGTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACTCTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGAAAACGATCAACAAAGGTTGACTCGAATCGAGTGAATTGCAAACAACTTAAAAAGAGCATAATTTGCATCTGTTTGTTTGACAGAAATGCAAGAAACATGTGAAAACGGTAAAAAAAACAGGGGAAGGAAAAATAACCGATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAATATAAAACCCTTACA ] [+] EMBL AGA281085 [ GTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACTCTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGGAAACGATCAACAAAGGTTGACTCGAATCGAGTGAATTGCAAACAAC ATGAGCATAATTTGCATCTGTTTGTTTGACAGAAATGCAAGAAACATGTGAAAACGGT AAAAAAACAGGGGAAGGAAAAATAACCGATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAAT ] [+] EMBL BM627087 [ ccgGAAAAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAATATAAAACCCTCACAAAAGGAAGCAAACGTGGACACTGCAAGATGAAGATTAAAACCCATATCGTGTTAAGAAATTTAGCAAAACAACAACAAAAACATATCGTGTGCAATTTTCATGCTGAGAGCAACCTGTTGAGGGAAAATTACAAACCTGTTTCGTTTATCTTCCCCATACTTCTTTCGGAACAAACGGACATCGGCATCATAAACAACCACACACACACACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGA GACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTCTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAAACAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAA GACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAG ] [+] EMBL BM602205 [ ccgCGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGGACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAG AGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCTTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTTTCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTGACTATTCTTAATTCGGGTTACTGCAAACCTGGGTACATATTGCAAACGAGTACAG ] [+] EMBL BX620867 [ GTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAG AGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACNTTACTTTCATACCAAAATGCTCTCTTACGTTGGTAGAACTGCGCTCTGGAAG ] [+] EMBL BX616354 [ TGGGAGTTAAAGGTGCGGAGTGTGTCGCGTAATGCTAAATTAATACTTCAGACAATTACAACCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCTTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTTTCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTGACTATTCTTAATTCGGTTTGCTGCAAACCTGGGTACATATTGCAAACGAGTACAGTGTGCAGTACGCGATGTTGGTGGTGGCTGAATCTTTCTAAATGGCTGGGGTCGACACTACACTGAAGCAAAGTATTTTGGATGTTATAATGGGGCTTTACGCTGAAAATTTAAAATACTTAAGTGAAACGTAAGTGCCAAAAATAAGTAAAAATAAATAGGAAATAGCCAGAGATAGAAAAACAAATGTGAGATAATAGCAGGGTGTATGACGAATAAGGAAGGAATAATGGATTACAGCGTTTGACTGAAACTCCTTCGGCTCCGGGATGATCTATTCTTGCCCTTGATATGCCCCACCCAGTTAATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTTGACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGAATGACATGTTATTGGTTGAACAATTAGTGTAGTCATA] [-] EMBL AGA282713 [ CCCACCCAGTTAATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTTGACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGAATGACATGTTATTGGTTGAACAAT ] consensusID : consensus_7660#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 554 fasta sequence [CCGCGGACGCGTGGGCACACATACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCCTTACGTTGGTTGAACTGCGCTCT] [+] EMBL BM604623 [CCGCGGACGCGTGGGCACACATACACACATACACGGAAGCTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTTTGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAAAAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTGGTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGTAGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATTTGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCACTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTACAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACCAAAATGCTCTCCTTACGTTGGTTGAACTGCGCTCT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7660#0 ACGCGTCCGGAACAATTGCCGCGATGCTTTAACACAACTCTTTTCGGGCGCTCATTGCAG 60 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 TAGAATGAGGGTTGTTTTGATTGATAGAGTAACTAGCAAATAGCTTTCTTGTTTGTTTTT 120 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 TTTTTTTTTTGTTTTGTTGCTTTTAGAAAAGCATTTAGAAAAGGCAAAACCACACAAACT 180 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 CTGTGCAGTATCCATGAATGGCATAAAAGCGTATGTAGAGGTTATTGAAAACGATCAACA 240 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AAGGTTGACTCGAATCGAGTGAATTGCAAACAACAAGAGCATAATTTGCATCTGTTTGTT 300 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 TGACAGAAATGCAAGAAACATGTGAAAACGGTAAAAAAACAGGGGAAGGAAAAATAACCG 360 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 ATAGTAAAAATGTATACGATGATGATTACTTTGGAACGTAAAAATCTCCTAATACGTGAA 420 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AAAACACTCACACAGTTGTATCGCGCATATATAAAAAGGGATGAAAAAGAACATCAAAAT 480 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 ATAAAACCCTTACAAAAGGAAGCAAACGTGGACACTGCAAGATGAAGATTAAAACCCATA 540 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 TCGTGTTAAGAAATTTAGCAAAACAACAACAAAAACATATCGTGTGCAATTTTCATGCTG 600 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AGAGCAACCTGTTGAGGGAAAATTACAAACCTGTTTCGTTTATCTTCCCCATACTTCTTT 660 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 CGGAACAAACGGACATCGGCATCATAAACAACCACACACACACACACACATACACGGAAG 720 consensus_7660#1 ---------------------CCGCGGACGCGTGGGCACACATACACACATACACGGAAG 39 * ** ****** ***************** consensus_7660#0 CTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTT 780 consensus_7660#1 CTCCATATCGAATACATATTAGAAATGATTGGAAATATGTGTAGCAAGGAAACTCGTTTT 99 ************************************************************ consensus_7660#0 TGA----GACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAA 836 consensus_7660#1 TGAATATGACTGGAATATGACGCAAAAATGTGTTTTCTTATACAAAGCACGACAAACAAA 159 *** ***************************************************** consensus_7660#0 AAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTG 896 consensus_7660#1 AAGCTAGTACAACTAAGTAACTTAGTTTTTAAAACAATTTTTGAATTAGGATACGGTTTG 219 ************************************************************ consensus_7660#0 GTTTTAGTTCTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGT 956 consensus_7660#1 GTTTTAGTTTTCGGTTTGCTTTGGTGATTTTTATTTGTTATATTTTATGTACTACGAGGT 279 ********* ************************************************** consensus_7660#0 AGAAGAAACTAAAAAAACAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATT 1016 consensus_7660#1 AGAAGAAACTAAAAAATCAAGCAAACTCTTAGCGTTAAACGTGTAAGACAAAAAGACATT 339 **************** ******************************************* consensus_7660#0 TGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCA 1076 consensus_7660#1 TGTAATGTTCAAAGATTGTTAAAGTTTTATCGGTAATGATGTTGCGCGACGCATTGGGCA 399 ************************************************************ consensus_7660#0 CTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTA 1136 consensus_7660#1 CTGGGAGTTAAAGGTGCGGAGTGTGTTGCGTAATGCTAAATTAATACTTCAGAGCCATTA 459 ************************************************************ consensus_7660#0 CAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACC 1196 consensus_7660#1 CAAACAAACACATTATTGTACTGAAATAAGCTCGGCGCTATTTCACCTTACTTTCATACC 519 ************************************************************ consensus_7660#0 AAAATGCTCTC-TTACGTTGGTTGAACTGCGCTCTGGAAGATTTGAGTTGCGAGCGCGTT 1255 consensus_7660#1 AAAATGCTCTCCTTACGTTGGTTGAACTGCGCTCT------------------------- 554 *********** *********************** consensus_7660#0 TCAAGTAAATGGGGACCCAGGGTGAATGTTTCCAACTTAACTTTGTTCACATTTTGTCTG 1315 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 ACTATTCTTAATTCGGGTTACTGCAAACCTGGGTACATATTGCAAACGAGTACAGTGTGC 1375 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AGTACGCGATGTTGGTGGTGGCTGAATCTTTCTAAATGGCTGGGGTCGACACTACACTGA 1435 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AGCAAAGTATTTTGGATGTTATAATGGGGCTTTACGCTGAAAATTTAAAATACTTAAGTG 1495 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AAACGTAAGTGCCAAAAATAAGTAAAAATAAATAGGAAATAGCCAGAGATAGAAAAACAA 1555 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 ATGTGAGATAATAGCAGGGTGTATGACGAATAAGGAAGGAATAATGGATTACAGCGTTTG 1615 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 ACTGAAACTCCTTCGGCTCCGGGATGATCTATTCTTGCCCTTGATATGCCCCACCCAGTT 1675 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 AATTCCTTAGCAAAAATCCAACTGAAAGCGCGTGCGTGTAAACAAAGCCTGCAGATGGTT 1735 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 GACGTATTTTCCAAAACAAATTCAGTAGTATATCGGCAGAAATGTTAGGCTCAATGTGGA 1795 consensus_7660#1 ------------------------------------------------------------ consensus_7660#0 ATGACATGTTATTGGTTGAACAATTAGTGTAGTCATA 1832 consensus_7660#1 ------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||