These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7675#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1275 fasta sequence [ACGCAACGATAAGCAGCCAGCCACAAGCAACCGAAAAGGCAGCGCTGCCGGCGCCACACAGTGAAGGCAACAGCTTCTCAGCGCAAGATTAAGCAAAACGTGAAAGTTGCAACGAAGTAATTGATTTATTGCAACCAGCTACAAAAGAAAGAGGGCAGTTTTGTTCAATTGTTTAAAAAAGCGGTAAAAAACTGTTTATTTTTTTTAAAGAGTGTAACAAGTGTGAAGTGACAGCATTGAAACAGGCATCGAAAGTGAGTTAAAAGCATCGATGCATCTTACATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCATTGCAGCAAAAGATACGGCAAAGACAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGTGTTTGTGTGTTTCCACTGACTACAACGGTGATTGTTCTTGGAA--GCGGGAAAGCAAACGCAGCGTCACCTCAGGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAGAAAGCCTACTACACACTGCACGCACGTAAAACGCACCGGAAGGACACGCGGAGCAGTACAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCGCCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAGAACCGGAAGCG-CCGGCCGAGATCTACAACGAGCTGGCGGAGGAGTTTCAGCGGCTGCACAACCAGGAGATACGCTTCCTGCAGTATCTGAGCGTGCAGGCGGAGCGGCAGCAGCGCGAAGAAGCCTACCTTCAGGCGCAGCGCGAACAGCAGCAGCTTGCGCTAGACGTGCGCAGCAGCAGCAACACCAACGCGCTGCTAGACGATGCCGGCTCGCTGCTCGATGATTTACCGCAGGAGTACGGACGGGCCGAGGAGGCGGCCAACAGTTCGGGGCGCAATCTGAACGGATACGGGCACGAGAGCGTCACCCAGAGCGAACCGGTGCAGAAGGAGATTCCGCACCAGAAGAGCAAAAATGATAAGAAAAATAATCACTATATGTCCTTGTGTCACTTCAAGCTGTGCAACATGGGCCGTAAGCGCAATCAACGATATCCTCAATTCTGGAACTAAACGGTGAACGAGCGCTGACAAAACCAGAACGACACTTCTATGTACAACGAAACAGCAAACTAAACACAAAAAAACACGCTTCCCCGGAAAAGACATTCCACGGGTGGCCAACCGGATCGGGGGACATTCCAATCCGCTCGATGATAGAGAAC] [+] EMBL BX606058 [ACGCAACGATAAGCAGCCAGCCACAAGCAACCGAAAAGGCAGCGCTGCCGGCGCCACACAGTGAAGGCAACAGCTTCTCAGCGCAAGATTAAGCAAAACGTGAAAGTTGCAACGAAGTAATTGATTTATTGCAACCAGCTACAAAAGAAAGAGGGCAGTTTTGTTCAATTGTTTAAAAAAGCGGTAAAAAACTGTTTATTTTTTTTAAAGAGTGTAACAAGTGTGAAGTGACAGCATTGAAACAGGCATCGAAAGTGAGTTAAAAGCATCGATGCATCTTACATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCATTGCAGCAAAAGATACGGCAAAGACAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGTGTTTGTGTG ] [+] EMBL AGA282653 [ ACACAGTGAAGGCAACAGCTTCTCAGCGCAAGATTAAGCAAAACGTGAAAGTTGCAACGAAGTAATTGATTTATTGCAACCAGCTACAAAAGAAAGAGGGCAGTTTTGTTCAATTGTTTAAAAAAGCGGTAAAAAACTGTTTATTTTTTTTAAAGAGTGTAACAAGTGTGAAGTGACAGCATTGAAACAGGCATCGAAAGTGAGTTAAAAGCATCGATGCATCTTACATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCATTGCAGCAAAAGATACGGCAAAGACAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGTGTTTGTGTGTTTCCACTGACTACAACGGTGATTGTTCTTGGAA GCGGGAAAGCAAACGCAGCGTCACCTCAGGTGGAC ] [+] EMBL AGA285492 [ AGAGCAAGTGTTTGTGTGTTTCCACTGACTACAACGGTGATTGTTCTTGGAA GCGGGAAAGCAAACGCAGCGTCACCTCAGGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAGAAAGCCTACTACACACTGCACGCACGTAAAACGCACCGGAAGGACACGCGGAGCAGTACAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCGCCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAGAACCGGAAGCG CCGGCCGAGATCTAC ] [+] EMBL BX607818 [ AACGGTGATTGTTCTTGGAACTGCGGGAAAGCAAACGCAGCGTCACCTCAGGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAGAAAGCCTACTACACACTGCACGCACGTAAAACGCACCGGAAGGACACGCGGAGCAGAGCAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCGCCATTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAGAACCGGAAGCG CCGGCCGAGATCTACAACGAGCTGGCGGAGGAGTTTCAGCGGCTGCACAACCAGGAGATACGCTTCCTGCAGTATCTGAGCGTGCAGGCGGAGCGGCAGCAGCGCGAAGAAGCCTACCTTCAGGCGCAGCGCGAACAGCAGCAGCTTGCGCTAGACGTACGCAGCAGCAG CAACGCGCTGCTAGACGATGCCGGCTCGCTCCTCGACGACATACCGCAGGAGTACGGACGGGCCGAGGAGGCGGCCAACAGTTCTGGGCGCAATCTGAACGGATACGGGCACGAGAGCGTCACCCAGAGCGAACCGGTGCAGAAGGAGATTCCGCACCAGAAGAGCAAAAATGATAAGAAAAATAATCACTATATGTCCTTGTGTCACTTCAAGCTGTGCAACATGGGCCGTAAGCGCAATCAACGATATCCTCAATTCTGGAACTAAACGGTGAACGAGCGCTGACAAAACCAGAACGACACTTCTATGTACAACGAAACAGCAAACTAAACACAAAAAAACACGCTTCCCCGGAAAAGACATTCCACGGGTGGCCAACCGGATCGGGGGACATTCCAATCCGCTCGATGATAGAGAAC] [-] EMBL AGA281025 [ TTGGACGCTGATCGTGCTGGTGGCGGTCGCCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAGAACCGGAAGCG CCGGCCGAGATCTACAACGAGCTGGCGGAGGAGTTTCAGCGGCTGCACAACCAGGAGATACGCTTCCTGCAGTATCTGAGCGTGCAGGCGGAGCGGCAGCAGCGCGAAGAAGCCTACCTTCAGGCGCAGCGCGAACAGCAGCAGCTTGCGCTAGACGTGCGCAGCAGCAGCAACACCAACGCGCTGCTAGACGATGCCGGCTCGCTGCTCGATGATTTACCGCAGGAGTACGGACGGGCCGAGGAGGCGGCCAACAGTTCGGGGCGCAATCTGAACGGATACGGGCACGAGAGCGTCACCCAGAGCGAACCGGTGCAGAAGGAGATTCCGCACCAGAAGAGCAAAAAaaa ] [-] EMBL AGA281487 [ CGGTACTGGCCCGCCCGCTAGAACCGGAAGCGCCCGGCCGAGATCTACAACGAGCTGGCGGAGGAGTTTCAGCGGCTGCACAACCAGGAGATACGCTTCCTGCAGTATCTGAGCGTGCAGGCGGAGCGGCAGCAGCGCGAAGAAGCCTACCTTCAGGGGCAGCGCGAACAGCAGCAGCTTGCGCTAGACGTGCGCAGCAGCAGCAACACCAACGCGCTGCTAGACGATGCCGGCTCGCTGCTCGATGATTTACCGCAGGAGTACGGACGGGCCGAGGAGGCGGCCAACAGTTCGGGGCGCAATCTGAACGGATACGGGCACGAGAGCGTCACCCAGAGCGAACCGGTGCAGAAGGAGATTCCGCACCAGAAGAGCAAAAAaaaa ] [-] EMBL AGA284195 [ GCTCGATGATTTACCGCAGGAGTACGGACGGGCCGAGGAGGCGGCCAACAGTTCGGGGCGCAATCTGAACGGATACGGGCACGAGAGCGTCACCCAGAGCGAACCGGTGCAGAAGGAGATTCCGCACCAGAAGAGCAAAAATGATAAGAAAAATAATCACTATATGTCCTTGTGTCACTTCAAGCTGTGCAACATGGGCCGTAAGCGCAATCAACGATATCCTCAATTCTGGAACTAAACGGTGAACGAGCGCTGACAAAACCAGAACGACACTTTTATGTACAACGAAACAGCAAACTAAAAAAAA ] consensusID : consensus_7675#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 679 fasta sequence [CCGCCCACGCGTCCGCGCTTCGCTACGCAACGATAAGCAGCCAGCCACAAGCAACCGGAAAGGCAGCGCTGCCGGCGCCACACATCTCAGCGCAAGATTAAGCAAAACGTGAAAGTTGCAACGAAGTAATTGATTAATTGCAACTAGCAACAAAAGAAAAAGGGCAGTTTTGTTCAATTGTTTAAAAAAGCGGTGAAAAGGAGTTTTTTTGTATAAAAGTGTGACAAGTGTGAAGTGACAGCATTGAAACCGGCATCGAAAGTGAGTTAAAAGCACCGATGCATCTTATATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCTTTGCAGCAAAAGATACGGCAAAGATAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGTGTTTGTGTGTTTCCACTGACTAAAACGGTGATTGTTCTTGGAACTGCGGGAAAGCAAACGCAGCGTCACCGGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAGAAAAGCCTACTTACTACACACTGCACGCGCGTAAAACGCACCGGAAGGACACGCGGAGCAGAACAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCGCCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAG] [+] EMBL BM634773 [CCGCCCACGCGTCCGCGCTTCGCTACGCAACGATAAGCAGCCAGCCACAAGCAACCGGAAAGGCAGCGCTGCCGGCGCCACACATCTCAGCGCAAGATTAAGCAAAACGTGAAAGTTGCAACGAAGTAATTGATTAATTGCAACTAGCAACAAAAGAAAAAGGGCAGTTTTGTTCAATTGTTTAAAAAAGCGGTGAAAAGGAGTTTTTTTGTATAAAAGTGTGACAAGTGTGAAGTGACAGCATTGAAACCGGCATCGAAAGTGAGTTAAAAGCACCGATGCATCTTATATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCTTTGCAGCAAAAGATACGGCAAAGATAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGTGTTTGTGTGTTTCCACTGACTAAAACGGTGATTGTTCTTGGAACTGCGGGAAAGCAAACGCAGCGTCACCGGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAGAAAAGCCTACTTACTACACACTGCACGCGCGTAAAACGCACCGGAAGGACACGCGGAGCAGAACAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCGCCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7675#0 ------------------------ACGCAACGATAAGCAGCCAGCCACAAGCAACCGAAA 36 consensus_7675#1 CCGCCCACGCGTCCGCGCTTCGCTACGCAACGATAAGCAGCCAGCCACAAGCAACCGGAA 60 ********************************* ** consensus_7675#0 AGGCAGCGCTGCCGGCGCCACACAGTGAAGGCAACAGCTTCTCAGCGCAAGATTAAGCAA 96 consensus_7675#1 AGGCAGCGCTGCCGGCGCCACACA---------------TCTCAGCGCAAGATTAAGCAA 105 ************************ ********************* consensus_7675#0 AACGTGAAAGTTGCAACGAAGTAATTGATTTATTGCAACCAGCTACAAAAGAAAGAGGGC 156 consensus_7675#1 AACGTGAAAGTTGCAACGAAGTAATTGATTAATTGCAACTAGCAACAAAAGAAAAAGGGC 165 ****************************** ******** *** ********** ***** consensus_7675#0 AGTTTTGTTCAATTGTTTAAAAAAGCGGTAAAAAACTGTTTATTTTTTTTAAAGAGTGTA 216 consensus_7675#1 AGTTTTGTTCAATTGTTTAAAAAAGCGGTGAAAAGGAGTT--TTTTTGTATAAAAGTGTG 223 ***************************** **** *** ***** * ** ***** consensus_7675#0 ACAAGTGTGAAGTGACAGCATTGAAACAGGCATCGAAAGTGAGTTAAAAGCATCGATGCA 276 consensus_7675#1 ACAAGTGTGAAGTGACAGCATTGAAACCGGCATCGAAAGTGAGTTAAAAGCACCGATGCA 283 *************************** ************************ ******* consensus_7675#0 TCTTACATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCATTGCAGCAAAAGATA 336 consensus_7675#1 TCTTATATGGACGATTGTGTGAACAGTGTGTGCATTGGAAACGCTTTGCAGCAAAAGATA 343 ***** ************************************** *************** consensus_7675#0 CGGCAAAGACAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGT 396 consensus_7675#1 CGGCAAAGATAGTGAAACTGACCATCATTTTCAAACTCAACTCTAAAATCGAGAGCAAGT 403 ********* ************************************************** consensus_7675#0 GTTTGTGTGTTTCCACTGACTACAACGGTGATTGTTCTTGGAA--GCGGGAAAGCAAACG 454 consensus_7675#1 GTTTGTGTGTTTCCACTGACTAAAACGGTGATTGTTCTTGGAACTGCGGGAAAGCAAACG 463 ********************** ******************** *************** consensus_7675#0 CAGCGTCACCTCAGGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAG 514 consensus_7675#1 CAGCGTCACC---GGTGGACTCAGCAGCGCTGGTTCTATTCGCTTGCGCCCCGAAGCTAG 520 ********** *********************************************** consensus_7675#0 AAAG-----CCTACTACACACTGCACGCACGTAAAACGCACCGGAAGGACACGCGGAGCA 569 consensus_7675#1 AAAAGCCTACTTACTACACACTGCACGCGCGTAAAACGCACCGGAAGGACACGCGGAGCA 580 *** * ***************** ******************************* consensus_7675#0 GTACAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCG 629 consensus_7675#1 GAACAACTACTACTACAACAATGATTACCCATTGGACGCTGATCGTGCTGGTGGCGGTCG 640 * ********************************************************** consensus_7675#0 CCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAGAACCGGAAGCGCCGGCCGAGA 689 consensus_7675#1 CCGTTGCCGGGCCGTGCACGGTACTGGCCCGCCCGCTAG--------------------- 679 *************************************** consensus_7675#0 TCTACAACGAGCTGGCGGAGGAGTTTCAGCGGCTGCACAACCAGGAGATACGCTTCCTGC 749 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 AGTATCTGAGCGTGCAGGCGGAGCGGCAGCAGCGCGAAGAAGCCTACCTTCAGGCGCAGC 809 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 GCGAACAGCAGCAGCTTGCGCTAGACGTGCGCAGCAGCAGCAACACCAACGCGCTGCTAG 869 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 ACGATGCCGGCTCGCTGCTCGATGATTTACCGCAGGAGTACGGACGGGCCGAGGAGGCGG 929 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 CCAACAGTTCGGGGCGCAATCTGAACGGATACGGGCACGAGAGCGTCACCCAGAGCGAAC 989 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 CGGTGCAGAAGGAGATTCCGCACCAGAAGAGCAAAAATGATAAGAAAAATAATCACTATA 1049 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 TGTCCTTGTGTCACTTCAAGCTGTGCAACATGGGCCGTAAGCGCAATCAACGATATCCTC 1109 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 AATTCTGGAACTAAACGGTGAACGAGCGCTGACAAAACCAGAACGACACTTCTATGTACA 1169 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 ACGAAACAGCAAACTAAACACAAAAAAACACGCTTCCCCGGAAAAGACATTCCACGGGTG 1229 consensus_7675#1 ------------------------------------------------------------ consensus_7675#0 GCCAACCGGATCGGGGGACATTCCAATCCGCTCGATGATAGAGAAC 1275 consensus_7675#1 ---------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||