These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7683#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1473 fasta sequence [AAGAATCGCACGAGGTTAATTGATCACAACATAGTAGTTCACGTTGGGTGATTGTACCTCGCATGCAGGGTGATGTTGATTGAGATTTTTCATAACTTTCTTTACAAACTTTAATACTTTTTTTCATTTCAGATTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGTACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCCAAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATTGATCATTTAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGTAGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGATTGTG-AAAATCGTTTCGAGTCATTCCGTCGGCGAAATTTTCTTAGT-AGTGCGGAGCAGCCTCAA-CGACGCCACATA-TA-GCGGAGGTA-TTTTGGATGAATG-AAAAGACTGGTGCTCAATATACACTATGTTT-GGGTTATCT-CATAACCACTGGAACTGTAATTACGAGCGCTGCG-TGCACCGAGATTGTAAACCG-AAACCCA-ATATGTTGTT--ATTTTGGACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTGTGGAGAAACAAAACACACACACCGTTGGTGGCAACACTACAGACCTTTGGTTGGTTAATGGTGAACTTGTAAAGAAGTATTTGAACACATTTAT] [+] EMBL AL929704 [AAGAATCGCACGAGGTTAATTGATCACAACATAGTAGTTCACGTTGGGTGATTGTACCTCGCATGCAGGGTGATGTTGATTGAGATTTTTCATAACTTTCTTTACAAACTTTAATACTTTTTTTCATTTCAGATTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGTACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCCAAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATTGATCATTTAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGTAGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGATCCCAGCTATGCG ] [+] EMBL BX602455 [ TTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGTACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCCAAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATCGATCATTTAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGTAGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTT CCACTGAA ] [+] EMBL BM595410 [ ccgAAGGAAACACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGATTGTG AAAATCGTTTCGAGTCATTCCGTCGGCGAAATTTTCTTAGT AGTGCGGAGCAGCC ] [+] EMBL BM595391 [ ccgAACGAAGCACCATATATGATCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGAGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACGAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGAT ] [+] EMBL BM631410 [ ccgCGACAATACAAACTGTTTACTTGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGGTAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACGTTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAGAGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCTAGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGA ] [+] EMBL AL695704 [ ccgagGTTCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGTTGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGAAGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGGCTACCTAAGGACGTCTTGGATGATGAACAGCTGCTTAACGATGAAGATCAACAGTTA AAGATTGTGAAAAATCG TTCGAGTCATTCCGTCGGCGAAATTTTCTTAGTAAGTGCGGAGCAGCCTCAA CGACGCCACATATTATGCGGAGGTATTTTTGGATGAATGAAAAAGACTGGTGCTCAATATACACTATGTTTGGGGTTATCTCCATAACCACTGGAACTGTAATTACGAGCGCTGCGTTGCACCGAGATTGTAAACCG AAACCCACATATGTTGTTTCATTTTGG ] [+] EMBL BX609906 [ TTAGAAGATTGTG AAAATCGTTTCGAGTCATTCCGTCGGCGAAATTTTCTTAGT AGTGCGGAGCAGCCTCAACCGAAGCCACATA TA GCGGAGGTA GTTTGGATGAATG AAAAGACTGGTGCTCAATATACACTATGTTT GGGTTACCT CATAACCACTGGAACTGTAATTACGAGCGCTGCG TGCACCGAGATTGTAAACCGCAAACCCA ATATGTTGTT ATTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTGTGGAGAAACAAAACACACACACCGTTGGTGGCAACACTACAGACCTTTGGTTGGTTAATGGTGAACTTGTAAAGAAGTATTTGAACACATTTAT] consensusID : consensus_7683#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 787 fasta sequence [CAGAATCCCCCGAGGTTGTTCGAGTCATTCCGTCGGCGAAATTTCTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATAGCGGAGGTAGTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTATCTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCGCAAACCCAATATGTTTGTTATTTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTTGTGGAGAAACAAAAACACACACCGTTGGTGGCAACACTACAGACCTTTGTTCAATCACAACTACGGCAATCATCGGTGCATCCCGTCTACGATTCTGATTGCAAGCGGTACGTAAAAACGTCATTGCACGGTGGGGAATTTTGTATGCATTCTACGACCTCGCAATCAACAAACACAGCAGGTCTTATCGTTTGGCGTGGAAAAGGAACCAAAAACGCTCCGGTTGAGTATTTGATCGGGGTATACAGCCGCGGTGGCAACTATGAAGCTGACGAGCCGCTGATTAATACGCCGTATTTCGGAATATGTTCCATGGNTAATAGATAACCTTTACACTGAATCAGTCTAATGAGGAGTATTTATGCTTCTAATAAAACTAGCAGATAAGGTGATCCTCTTAATC] [+] EMBL AL931992 [CAGAATCCCCCGAGGTTGTTCGAGTCATTCCGTCGGCGAAATTTCTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATAGCGGAGGTAGTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTATCTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCGCAAACCCAATATGTTTGTTATTTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAGCACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATCTTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTTTTGTGGAGAAACAAAAACACACACCGTTGGTGGCAACACTACAGACCTTTGTTCAATCACAACTACGGCAATCATCGGTGCATCCCGTCTACGATTCTGATTGCAAGCGGTACGTAAAAACGTCATTGCACGGTGGGGAATTTTGTATGCATTCTACGACCTCGCAATCAACAAACACAGCAGGTCTTATCGTTTGGCGTGGAAAAGGAACCAAAAACGCTCCGGTTGAGTATTTGATCGGGGTATACAGCCGCGGTGGCAACTATGAAGCTGACGAGCCGCTGATTAATACGCCGTATTTCGGAATATGTTCCATGGNTAATAGATAACCTTTACACTGAATCAGTCTAATGAGGAGTATTTATGCTTCTAATAAAACTAGCAGATAAGGTGATCCTCTTAATC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7683#0 AAGAATCGCACGAGGTTAATTGATCACAACATAGTAGTTCACGTTGGGTGATTGTACCTC 60 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 GCATGCAGGGTGATGTTGATTGAGATTTTTCATAACTTTCTTTACAAACTTTAATACTTT 120 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TTTTCATTTCAGATTGCAACCATCGCATGTATTACATGCTGAAAGAACCGACATTTGGGT 180 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 ACGGGACACTCCAGTTCTAGATGAAAAGTTGTACAATGTGATCGAGATACACTTGCATCC 240 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 AAACTATATTAACGGTTCCTACTACAACAATATAGCGATCTTAAAGATCGATTGATCATT 300 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TAACACTCTACCGGCTTGCATTTGGAATGCTCCAAATCTACCAGATCCGTTGATCGAAGT 360 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 AGCAACTGTTGGGAGAGTTGACTTGATTATATATCAGTACAAAGGAAACACCATATATGA 420 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TCCCAGCTATGCGTCGCTAACTCCCCGAGTTTACGCATACGACAATACAAACTGTTTACT 480 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TGCAGATCAATATAAAAAAAATCTGGTCGAAGGACTTGCACATCAGCACCTGTGCTTTGG 540 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TAATGACCCATTTCTGGTGCCTGAAGTGTGTAACCTTACCAGTGGTGGACCGCTTCAACG 600 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TTCAGTTTTTCGCCTTCAACGCCATTACAAGCATGTGTACGGAATTAGCCTTTTTGGAAG 660 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 AGATTGTGGTTACGGCGAACCTGCAGTAGCTATTCGACTGCATGCTCATATGAACTGGCT 720 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 AGAGTCGGTGCTTTTACCCGCCAAATTGCCAAGCCAAAATTCTCACTCTCTAGATGCTGT 780 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TCAATTCATCAACTCCGATCTGGAATTGTTTGATCGCTGTGATTTTTACGATGAGTCGGT 840 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TGGACTTTGTGTTCCCACTGAACGTTGTAGACGAGTTCGGCAACGCTTAGAACAAAATGA 900 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 AGCCATGATATTCTGTGGGAATGGGACGATCATATGCTGCCTACCTAAGGACGTCTTGGA 960 consensus_7683#1 ------------------------------------------------------------ consensus_7683#0 TGATGAACAGCTGCTTAACGATGAAGATCAACAGTTAGAAGATTGTGAAAATCGTTTCGA 1020 consensus_7683#1 -----------------------------------CAGAATCCCCCGAGGTT--GTTCGA 23 **** ** * ***** consensus_7683#0 GTCATTCCGTCGGCGAAATTTTCTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATA 1080 consensus_7683#1 GTCATTCCGTCGGCGAAATTT-CTTAGTAGTGCGGAGCAGCCTCAACGACGCCACATATA 82 ********************* ************************************** consensus_7683#0 GCGGAGGTATTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTAT 1140 consensus_7683#1 GCGGAGGTAGTTTGGATGAATGAAAAGACTGGTGCTCAATATACACTATGTTTGGGTTAT 142 ********* ************************************************** consensus_7683#0 CTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCG-AAA 1199 consensus_7683#1 CTCATAACCACTGGAACTGTAATTACGAGCGCTGCGTGCACCGAGATTGTAAACCGCAAA 202 ******************************************************** *** consensus_7683#0 CCCAATATGTT-GTTATTTTGG-ACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAG 1257 consensus_7683#1 CCCAATATGTTTGTTATTTTGGTACCATCCGGAGTCAATATGAAGATTTTCCTATTCGAG 262 *********** ********** ************************************* consensus_7683#0 CACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATC 1317 consensus_7683#1 CACCAATTGCAACTATTATTCGCCATCCACAGTATGAGTCTGCTACAGGAGCAAATAATC 322 ************************************************************ consensus_7683#0 TTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTT 1377 consensus_7683#1 TTGCTCTAATAAAACTAAGCGATCCCATAAAACCCACCGCAGCGATCTTCCCCGGTTGTT 382 ************************************************************ consensus_7683#0 T-GTGGAGAAACAAAACACACACACCGTTGGTGGCAACACTACAGACCTTTGGTTGGTTA 1436 consensus_7683#1 TTGTGGAGAAACAAAA-ACACACACCGTTGGTGGCAACACTACAGACCTTTGTTCAATCA 441 * ************** *********************************** * * * consensus_7683#0 ATGGTGAACTTGTAAA-GAAGTATTTGAAC-ACATTTAT--------------------- 1473 consensus_7683#1 CAACTACGGCAATCATCGGTGCATCCCGTCTACGATTCTGATTGCAAGCGGTACGTAAAA 501 * * * * * ** * ** ** * consensus_7683#0 ------------------------------------------------------------ consensus_7683#1 ACGTCATTGCACGGTGGGGAATTTTGTATGCATTCTACGACCTCGCAATCAACAAACACA 561 consensus_7683#0 ------------------------------------------------------------ consensus_7683#1 GCAGGTCTTATCGTTTGGCGTGGAAAAGGAACCAAAAACGCTCCGGTTGAGTATTTGATC 621 consensus_7683#0 ------------------------------------------------------------ consensus_7683#1 GGGGTATACAGCCGCGGTGGCAACTATGAAGCTGACGAGCCGCTGATTAATACGCCGTAT 681 consensus_7683#0 ------------------------------------------------------------ consensus_7683#1 TTCGGAATATGTTCCATGGNTAATAGATAACCTTTACACTGAATCAGTCTAATGAGGAGT 741 consensus_7683#0 ---------------------------------------------- consensus_7683#1 ATTTATGCTTCTAATAAAACTAGCAGATAAGGTGATCCTCTTAATC 787 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||