These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7685#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 830 fasta sequence [CCGCAAAATCAACTAAATATCTGCAGGAAGTGGAGTGGATGTTGCTTTCTTAGAATTACATCAAGATTAAGCGGATCCAACAAGGGGGGAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCGGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCCGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTAGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTCCCACACACGCACACACTTCCGCAAGAAGCGCCGAAAGCAGTACACGCGTATCAATTTCTACCGCACGCCGCAAACGATGATTCGCATCAACTCGATCGACATTAAGCGAAAGCTGAGCGATTCGGCGAGTGCGGAAGCCGCTGGGGAGGAACGGTTTTTCTAGCTTAAAAGCTTTGAAAAGGGGCTCATATGCAGTTAATAAATAGATCACCAAACTATTACAAAAAA] [+] EMBL BM630300 [CCGCAAAATCAACTAAATATCTGCAGGAAGTGGAGTGGATGTTGCTTTCTTAGAATTACATCAAGATTAAGCGGATCCAACAAGGGGGGAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCGGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCCGGT ] [+] EMBL BX606031 [ AGTGGAGTGGATGTTGCTTTCTTAGAATTACATCAAGATTAAGCGGATCCAACAAGGGTGCAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCGGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCCGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTAGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTC ] [+] EMBL BX627437 [ CGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCGGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCCGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTAGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTCCCACACACGCACACACTTCCGCAAGAAGCGCCGAAAGCAGTACACGCGTATCAATTTCTACCGCACGCCGCAAACGATGATTCGCATCAACTCGATCGACATTAAGCGAAAGCTGAGCGATTCGGCGAGTGCGGAAGCCGCTGGGGAGGAACGGTTTTTCTAGCTTAAAAGCTTTGAAAAGGGGCTCATATGCAGTTAATAAATAGATCACCA ] [+] EMBL BX623842 [ CGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGTCAACTAGCCGGGTTGCTGAAACCCTCAACACTAAACACACTGATCGAACCCCTTAAAATTGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCCGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCAGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTGGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTCCCACACACGCACACACTTCCGCAAGAAGCGCCGAAAGCAGTACACGCGTATCAATTTCTACCGCACGCCGCAAACGATGATTCGCATCAACTCGATCGACATTAAGCGAAAGCTGAGCGATTCGGCGAGTGCGGAAGCCGCTGGGGAGGAACGGTTTTTCTAGCTTGAAAGCTTTGCAAAGGGGCTCATATGCAGTTAATAAATAGATCACC ] [+] EMBL BM601435 [ CGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCGGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCCGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGGCGTCCCCTGCTGACACCCGGTCTAGTCGATGTGCAGGCTACCATCATCG ] [-] EMBL AGA280974 [ GGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTAGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTCCCACACACGCACACACTTCCGCAAGAAGCGCCGAAAGCAGTACACGCGTATCAATTTCTACCGCACGCCGCAAACGATGATTCGCATCAACTCGATCGACATTAAGCGAAAGCTGAGCGATTCGGCGAGTGCGGAAGCCGCTGGGGAGGAACGGTTTTTCTAGCTTAAAAGCTTTGAAAAGGGGCTCATATGCAGTTAATAAATAGATCACCAAACTATTACAAAAAA] consensusID : consensus_7685#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 690 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTCGTGCTCCAAAAAACAATTTAAGAAAAGCCAATAAATTCAATTTGTTATTTCGTTTCCTCCCTAGGAAGTGGAGTGGATATTGCTTTCTTAGAACTACATCAAGATTAAGCGGATCCAACAAGGGTGCAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGTCAACTAGCCGGGTTGCTGAAACCCTCAACACTAAACACACTGATCGAACCCCTTAAAATTGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCCGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCAGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTGGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTCCCACACACGCACACACTTCCG] [+] EMBL BM595144 [CCGCGGACGCGTGGGCGGACGCGTGGGTCGTGCTCCAAAAAACAATTTAAGAAAAGCCAATAAATTCAATTTGTTATTTCGTTTCCTCCCTAGGAAGTGGAGTGGATATTGCTTTCTTAGAACTACATCAAGATTAAGCGGATCCAACAAGGGTGCAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGTCAACTAGCCGGGTTGCTGAAACCCTCAACACTAAACACACTGATCGAACCCCTTAAAATTGTACCACTTACCTCAAGGTGGAGTAACCCGTCCGCCGCATTTGCAAACCATCGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACCGTAAACAAGCAGCTAGAGACGGGATCCGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGCGGCAAGCAGTTCAAAATCACTTCAGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCGGAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCGCTGATCGGCCGTCCCCTGCTGACACCCGGTCTGGTCGATGTGCAGGCTACCATCATCGAGAAGACGCTCTCCCACACACGCACACACTTCCG] consensusID : consensus_7685#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 538 fasta sequence [CAGATCCCCCGAGTTAAAGTGGAGTGGATGTTGCTTTCTTAGATACATCAAGATTAAGCGGATCAACAAGGGTGCAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCCGTCCGCCGGCATTTTGGCAAAACCCAATTCCGATTGGGAAGGCCAGCTCCCAAGGCCGCTGTTAAGGCTTCCCGGCTTCCGGCCGACACCAAAAAGCACCACTTGAAGGACCGTTAAAACNAAAGGCAAGGGNCTTTAAGACGAAAGCNACCCCGGGGGGAATTCCGGCGGAAAGAGCGGGGCCCGGAACCTGGTTCTGGCGGGTGGTGCAGCTTGTGCGGCAAGCCAGTTCCACAGACATCACTTCCCCGGTTGGGANTCACTTTTCACTTCCCGNGGTNC] [+] EMBL AL695182 [CAGATCCCCCGAGTTAAAGTGGAGTGGATGTTGCTTTCTTAGATACATCAAGATTAAGCGGATCAACAAGGGTGCAGTAATACCGGGCCGAAAGCTGATCCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTTTCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCTTAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCCGTCCGCCGGCATTTTGGCAAAACCCAATTCCGATTGGGAAGGCCAGCTCCCAAGGCCGCTGTTAAGGCTTCCCGGCTTCCGGCCGACACCAAAAAGCACCACTTGAAGGACCGTTAAAACNAAAGGCAAGGGNCTTTAAGACGAAAGCNACCCCGGGGGGAATTCCGGCGGAAAGAGCGGGGCCCGGAACCTGGTTCTGGCGGGTGGTGCAGCTTGTGCGGCAAGCCAGTTCCACAGACATCACTTCCCCGGTTGGGANTCACTTTTCACTTCCCGNGGTNC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7685#0 ---------------------------------------------------------CCG 3 consensus_7685#1 CCGCGGACGCGTGGGCGGACGCGTGGGTCGTGCTCCAAAAAACAATTTAAGAAAAGCCAA 60 consensus_7685#2 ------------------------------------------------------------ consensus_7685#0 CAAAATCAACTAAATATCTG----------CAGGAAGTGGAGTGGATGTTGCTTTCTTAG 53 consensus_7685#1 TAAATTCAATTTGTTATTTCGTTTCCTCCCTAGGAAGTGGAGTGGATATTGCTTTCTTAG 120 consensus_7685#2 ----------CAGATCCCCCGA--------GTTAAAGTGGAGTGGATGTTGCTTTCTTAG 42 * ************* ************ consensus_7685#0 AATTACATCAAGATTAAGCGGATCCAACAAGGGGGGAGTAATACCGGGCCGAAAGCTGAT 113 consensus_7685#1 AACTACATCAAGATTAAGCGGATCCAACAAGGGTGCAGTAATACCGGGCCGAAAGCTGAT 180 consensus_7685#2 A--TACATCAAGATTAAGCGGATC-AACAAGGGTGCAGTAATACCGGGCCGAAAGCTGAT 99 * ********************* ******** * ************************ consensus_7685#0 CCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTT 173 consensus_7685#1 CCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTT 240 consensus_7685#2 CCGGAGTGTGCCGGAACCAAACAGACCGTAAAGAAGGGAACAAAACACTTCCGCAATGTT 159 ************************************************************ consensus_7685#0 TCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCT 233 consensus_7685#1 TCTTCGTCAACTAGCCGGGTTGCTGAAACCCTCAACACTAAACACACTGATCGAACCCCT 300 consensus_7685#2 TCTTCGCCAACTAGCCGGGTTGTTGAAACCCTCAACCCTAAACACACTGATTGAACCCCT 219 ****** *************** ************* ************** ******** consensus_7685#0 TAAAATCGTACCACTTACCTCAAGGTGGAGTAACCC-GTCCGCCG-CATTTGCAAACCAT 291 consensus_7685#1 TAAAATTGTACCACTTACCTCAAGGTGGAGTAACCC-GTCCGCCG-CATTTGCAAACCAT 358 consensus_7685#2 TAAAATCGTACCACTTACCTCAAGGTGGAGTAACCCCGTCCGCCGGCATTTTGGCAAAAC 279 ****** ***************************** ******** ***** * * consensus_7685#0 CGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACC 351 consensus_7685#1 CGATGGAGCAGCTCCAGCGCTGTAGCTCCGCTCGCCGACACCAAAAGCACACTTGAGACC 418 consensus_7685#2 CCA--ATTCCGATTGGGAAGGCCAGCTCCCAAGGCCGCTGTTAAGGCTTCCC----GGCT 333 * * * * * * ****** **** ** * * * * consensus_7685#0 GTAAACAAGCAGCTAGAGACGGGATCGGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGC 411 consensus_7685#1 GTAAACAAGCAGCTAGAGACGGGATCCGAAGGGCGACTGTTTGCGGTGGTGCAGCTGTGC 478 consensus_7685#2 TCCGGCCGACACCAAAAAGCACCACTTGAAGG---ACCGTT---AAAACNAAAGGCAAGG 387 * ** * * * * * ***** ** *** ** * consensus_7685#0 GGCAAGCAGTTCAAAATCACTTCCGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCG 471 consensus_7685#1 GGCAAGCAGTTCAAAATCACTTCAGGTGATATTATCGTCGTTGAAGGCTACTGGCCACCG 538 consensus_7685#2 GNCTTTAAGACGAAAGCNACCCCGGGGGGAATT-CCGGCGGAAAGAGC----GGGGCCCG 442 * * ** *** ** * ** * *** ** ** * ** ** *** consensus_7685#0 GAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCG 531 consensus_7685#1 GAGGGTGGCGATCGTTTGCGGCTGGATAAGGTGCTGCTAGCGGGTAGCAAGGACTTTTCG 598 consensus_7685#2 GAACCTGG-------TTCTGGCGGGT---GGTGCAGCTTGT--GCGGCAAGCCAGTTCCA 490 ** *** ** *** ** ***** *** * * ***** ** * consensus_7685#0 CTGATCGGCCGTCCCCTGCTGACACCCGGTCTAGTCGATGTGCAGGCTACCATCATCGAG 591 consensus_7685#1 CTGATCGGCCGTCCCCTGCTGACACCCGGTCTGGTCGATGTGCAGGCTACCATCATCGAG 658 consensus_7685#2 CAGACATCACTTCCCCGGTTGGGANTCACTTT--TCACTTCCCGNGGTNC---------- 538 * ** * ***** * ** * * * * ** * * * * * consensus_7685#0 AAGACGCTCTCCCACACACGCACACACTTCCGCAAGAAGCGCCGAAAGCAGTACACGCGT 651 consensus_7685#1 AAGACGCTCTCCCACACACGCACACACTTCCG---------------------------- 690 consensus_7685#2 ------------------------------------------------------------ consensus_7685#0 ATCAATTTCTACCGCACGCCGCAAACGATGATTCGCATCAACTCGATCGACATTAAGCGA 711 consensus_7685#1 ------------------------------------------------------------ consensus_7685#2 ------------------------------------------------------------ consensus_7685#0 AAGCTGAGCGATTCGGCGAGTGCGGAAGCCGCTGGGGAGGAACGGTTTTTCTAGCTTAAA 771 consensus_7685#1 ------------------------------------------------------------ consensus_7685#2 ------------------------------------------------------------ consensus_7685#0 AGCTTTGAAAAGGGGCTCATATGCAGTTAATAAATAGATCACCAAACTATTACAAAAAA 830 consensus_7685#1 ----------------------------------------------------------- consensus_7685#2 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||