These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7690#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 808 fasta sequence [CAGATCGCCACGAGGCCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACG-AAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG-CCCTGGTCGCACAGGCAT-CGG-CCGCGGC-AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA-CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC-TCACGCTCGAGACGTGCGAGAACGGACTGCTGT-TC-GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGGCCCGGTGACTG] [+] EMBL BX466522 [CAGATCGCCACGAGGTGTAGCACA CGTGAGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACGAAAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGGACCCTGGTCGCACAGGCATACGGNACGCGGCTAGCCCCCAGNTGTCCGGAACCGTACGGGGAGCAGGCGTACCTGCACCCAGAGNCACTGNGACCAGTTCTTCCTCTGCACCAACGGTACGCGTCACGCTCGAGACGTGCGAGAACGGACTGGTGTATCAGACGGCAAGGGTGCGGTCCACAACCACTGGAACTACAACTGGGCGGTCGACn ] [+] EMBL BM646888 [ CCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACG AAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATC ] [+] EMBL BM597636 [ CCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCGTACG AAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTG ] [+] EMBL BM653533 [ ATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCTGCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCC ] [+] EMBL BM592075 [ ccgCCAGCCATCTAACACCAATCAACTCTCGATCTCTCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGG CCCTGGTCGCACAGGCAT CGG CCGCGGC AGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGA CCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGC TCACGCTCGAGACGTGCGAGAACGGACTGCTGT TC GACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGGCCCGGTGACTG] consensusID : consensus_7690#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 624 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGCCCGGTGACTGCCACCGGCTGATCACCTGCGTCGACGGCCATCCGCGCCTGATCACGTGCGGCG] [+] EMBL BM647705 [CCGCCCACGCGTCCGCCCACGCGTCCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGCTTCTGGCCGTACCCGCGCTACCCAGTGCCCGGTGACTGCCACCGGCTGATCACCTGCGTCGACGGCCATCCGCGCCTGATCACGTGCGGCG] consensusID : consensus_7690#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CCGCCCACGCGTCCGCAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGT] [+] EMBL BM635488 [CCGCCCACGCGTCCGCAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCCAGCCAGCATGAAGCAGTTTGGCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCACAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGTGCGGTCCACAACCACTGCAACTACAACTGGGCGGTCGACTGCGGTAGCCGCAAGTTCGCCACGGACCAGACGCCCCTGTCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACCAGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTGTACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCGGAGGCGGTGGTCGGCTTCAAGTGCCCGCAGT] consensusID : consensus_7690#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 310 fasta sequence [GAATTCCCGAGGTTAGAGCCAGCAGCATGAAGCAGTTGGCGCACTATTCGGACTAATCGGCTGGCCTGGTCGCACAGGCATTGGCCGCGGCAGCCCCAGCTGTCGGAACCTGTACGGCGAGCAGGCGTACTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGGTGCGGGTCCACAACCACTGCAATTACAAACTGGGCGGGTCGAACTGCGGGTAGCCCGGCAAGTTTCGCCACGGGACCAAGACCGC] [+] EMBL AL695655 [GAATTCCCGAGGTTAGAGCCAGCAGCATGAAGCAGTTGGCGCACTATTCGGACTAATCGGCTGGCCTGGTCGCACAGGCATTGGCCGCGGCAGCCCCAGCTGTCGGAACCTGTACGGCGAGCAGGCGTACTGCACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACGTGCGAGAACGGACTGCTGTTCGACGGCAAGGGGTGCGGGTCCACAACCACTGCAATTACAAACTGGGCGGGTCGAACTGCGGGTAGCCCGGCAAGTTTCGCCACGGGACCAAGACCGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7690#0 CAGATCGCCACGAGGCCGGCCACACCGAGCGCGGACCGTGCTTGCGCCGTTTTGTCTGCG 60 consensus_7690#2 ------------------------------------------------------------ consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 ------------------------------------------------------------ consensus_7690#0 TACGAAAAAAAAAAAAATAGATCGGACACTTCCTCGATCAAACGGCCGGTTTTGGTTGCT 120 consensus_7690#2 ------------------------------------------------------------ consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 ------------------------------------------------------------ consensus_7690#0 GCCGTCTGTCGCTTTCTCCCTCCCGCCCCAGCCATCTAACACCAATCAACTCTCGATCTC 180 consensus_7690#2 --------------------------------------------------------CCGC 4 consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 ------------------------------------------------------------ consensus_7690#0 TCGAGCGATCGGTACAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCC 240 consensus_7690#2 CCACGCGTCCG---CAGCGAGCGAGTTCCAGCCGCAGTGTCAGTGAGTGTACAGCAGCCC 61 consensus_7690#3 ------------------------------------GAATTCCCGAGGTTAGAGC----C 20 consensus_7690#1 ----------------------------------------------------------CC 2 * consensus_7690#0 AGCCA-GCATGAAGCAGTTTGGC-GCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCA 298 consensus_7690#2 AGCCA-GCATGAAGCAGTTTGGC-GCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCA 119 consensus_7690#3 AGC-A-GCATGAAGCAGTT-GGC-GCACTATTCGGACTAATCGGCTGG--CCTGGTCGCA 74 consensus_7690#1 GCCCACGCGTCCGCCCACGCGTCCGCACTATTCGGACTAATCGGCCTGGCCCTGGTCGCA 62 * * ** * * * * ********************* * ********** consensus_7690#0 CAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTG 358 consensus_7690#2 CAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTG 179 consensus_7690#3 CAGGCATTGGCCGCGGCAGCCCC-AGCTGTCGGAACCTGTACGGCGAGCAGGCGTAC-TG 132 consensus_7690#1 CAGGCATCGGCCGCGGCAGCCCCCAGCTGTCCGGAACCGTACGGCGAGCAGGCGTACCTG 122 ******* *************** ******* * * * ******************* ** consensus_7690#0 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 418 consensus_7690#2 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 239 consensus_7690#3 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 192 consensus_7690#1 CACCCAGACCACTGCGACCAGTTCTTCCTCTGCACCAACGGTACGCTCACGCTCGAGACG 182 ************************************************************ consensus_7690#0 TGCGAGAACGGACTGCTGTTCGACGGCAAGGG-TGCGG-TCCACAACCACTGCAACTACA 476 consensus_7690#2 TGCGAGAACGGACTGCTGTTCGACGGCAAGGG-TGCGG-TCCACAACCACTGCAACTACA 297 consensus_7690#3 TGCGAGAACGGACTGCTGTTCGACGGCAAGGGGTGCGGGTCCACAACCACTGCAATTACA 252 consensus_7690#1 TGCGAGAACGGACTGCTGTTCGACGGCAAGGG-TGCGG-TCCACAACCACTGCAACTACA 240 ******************************** ***** **************** **** consensus_7690#0 A-CTGGGCGG-TCGA-CTGCGG-TAGCC--GCAAGTT-CGCCACGGACCAGACGCCCCTG 529 consensus_7690#2 A-CTGGGCGG-TCGA-CTGCGG-TAGCC--GCAAGTT-CGCCACGGACCAGACGCCCCTG 350 consensus_7690#3 AACTGGGCGGGTCGAACTGCGGGTAGCCCGGCAAGTTTCGCCACGGGACCAAGACCGC-- 310 consensus_7690#1 A-CTGGGCGG-TCGA-CTGCGG-TAGCC--GCAAGTT-CGCCACGGACCAGACGCCCCTG 293 * ******** **** ****** ***** ******* ******** * * ** * consensus_7690#0 TCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACC 589 consensus_7690#2 TCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACC 410 consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 TCGACGCCTGGCTGCGAGTACCTGTTCGGCGTCTATCCGGACGCGGCCGAATGCTCCACC 353 consensus_7690#0 AGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTG 649 consensus_7690#2 AGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTG 470 consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 AGCTACCACAAGTGCGCGTTCGGCGAGGTGCACCAAGAGCTGTGCGAACCGGGCCTGGTG 413 consensus_7690#0 TACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCG 709 consensus_7690#2 TACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCG 530 consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 TACGATCACCGCATCCACGGCTGCAACTGGCCCGACCAGCTGCTCGACTCGTGCAACCCG 473 consensus_7690#0 GAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGC 769 consensus_7690#2 GAGGCGGTGGTCGGCTTCAAGTGCCCGCAGT----------------------------- 561 consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 GAGGCGGTGGTCGGCTTCAAGTGCCCGCAGTCCGTGCCGTCCGGCACGGTCGCGGCCCGC 533 consensus_7690#0 TTCTGGCCGTACCCGCGCTACCCAGTGGCCCGGTGACTG--------------------- 808 consensus_7690#2 ------------------------------------------------------------ consensus_7690#3 ------------------------------------------------------------ consensus_7690#1 TTCTGGCCGTACCCGCGCTACCCAGTGCCCGGTGACTGCCACCGGCTGATCACCTGCGTC 593 consensus_7690#0 ------------------------------- consensus_7690#2 ------------------------------- consensus_7690#3 ------------------------------- consensus_7690#1 GACGGCCATCCGCGCCTGATCACGTGCGGCG 624 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||