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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7692#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 728 fasta sequence
[TCCACCCACGCGTCCGGCACCAGCAGCGTGATGATCGCGTTCGCGCCATTAGCCATCCTAGCGATCGTTCTATCGGCTAGCCCCGGTACAGCAAACACTTTGCACAACAATTCCTTCGACGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAACACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGTTCTTCGAGTACAGCGATAGCGAGAACGCGATCCCGCCGGACTATATGGCGTTCGTGAAGTGGGACGTGGATCTGGTCTACTTCTACGACTGTCCGCTGAACGATGGTGGGGCAGGGGCGGTGGGCGAGGAGTCGGTGCTGCTGCGCTGCAGCCTTGCTTGAGGTTGAAGGTTAAGGTCAAACGGTGTAAGGGAATTGGAATTAATAAATATGAA]
[+] EMBL BM651209 [TCCACCCACGCGTCCGGCACCAGCAGCGTGATGATCGCGTTCGCGCCATTAGCCATCCTAGTGATCGTTCTATCGGCTAACCCCGGTACAGCAAACACTTTGCACAACAATTCCTTCGACGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAACACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATG ]
[+] EMBL BM622387 [ CCGGCAGCGTGATGATCGCGTTCGCGCCATTAGCCATCCTAGCGATCGTTCTATCGGCTAGCCCCGGTACAGCAAATACTTTGCACAACAATCCCTTCGATGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGTTCTTCGAGTACAGCGATAGCGAGAACGCGATCCCGCCGGACTATATGGCGTTCGTGAAGTGGGACGTGGATCTGGTCTACTTCTACGACTGTCCGCTGAACGATGGTGGGGCAGGGGCGGTGGGCGAGGAGTCGGTGCTGCTGCGCTGCAGCCTTGCTTGAGGTTGAAGGTTAAGGTCAAACGGTGTAAGGGAAT ]
[+] EMBL BM595324 [ ccgAGCGTGATGATCGCGTTCGCGCCATTAGCCATCCTAGCGGTCGTTCTATCGGCTAGCCCCGGTACAGCAAACACTTTGCACAACAATTCCTTCGACGCGATCAAGGGATGTCTCCAGTTCGATGATGTCCCGGGGTACAACGACACCCCGACGTACATTGCCACCAACACGTTCCGCAACATGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGGTCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGTTCTTCGAGTACAGCGATAGCGAGAACGCGATCCCGCCGGACTATATGGCGTTCGTGAAGTGGGACGTGGATCTGGTCTA ]
[+] EMBL BX618313 [ TTTGCACAACAATCCCTTCGATGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGTTCTTCGAGTACAGCGATAGCGAGAACGCGATCCCGCCGGACTATATGGCGTTCGTGAAGTGGGACGTGGATCTGGTCTACTTCTACGACTGTCCGCTGAACGATGGTGGGGCAGGGGCGGTGGGCGAGGAGTCGGTGCTGCTGCGCTGCAGCCTTGCTTGAGGTTGAAGGTTAAGGTCAAACGGTGTAAGGGAATTGGAATTAATAAATATGAA]
[+] EMBL BM649944 [ ccgGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGTTCTTCGAGTACAGCGATAGCGAGAACGCGATCCCGCCGGACTATATGGCGTTCGTGAAGTGGGACGTGGATCTGGTCTACTTCTACGACTGTCCGCTGAACGATGGTGGGGCAGGGGCGGTTGGCGAGGAGTCGGTGCTGCTGCGCTGCAGCCTTGCTTGAGGTTGAAGGTTAAGGTCAAACGGTGTAAGGGAATT ]
consensusID : consensus_7692#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 691 fasta sequence
[GGCAGAATCCCCGAGGTTATTTTAAGAAAACGCACGGAATCTCGAACTAATCGCNACGCAGTTCATCCCCAGCACCAGCAGCGTGATGATCGCGTTCGCGCCATTAGCCATCCTAGCGATCGTTCTATCGGCTAGCCCCGGTACAGCAAATACTTTGCACAACAATCCCTTCGATGCGATACAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTACCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGGCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCAGACCGGGCCGCAATCAATCGTTACACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTNTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTACCGATAATGGGCGAGGTGCAGCTGACCGGAACGGGACGGCGAGACGGCGTACCGGNTCTTCGAGCTACCAGNGCGATAGACGAGAACGCGATCCCCGNCCGGACTATTATGGCCGTCNGCNGAACTGGCNACNGGTGGNATCNGGNACTAATTCTACGACTGTCCGATG]
[+] EMBL AL695539 [GGCAGAATCCCCGAGGTTATTTTAAGAAAACGCACGGAATCTCGAACTAATCGCNACGCAGTTCATCCCCAGCACCAGCAGCGTGATGATCGCGTTCGCGCCATTAGCCATCCTAGCGATCGTTCTATCGGCTAGCCCCGGTACAGCAAATACTTTGCACAACAATCCCTTCGATGCGATACAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTACCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGGCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCAGACCGGGCCGCAATCAATCGTTACACCAACGTGCTGCTGAAAGAGGCGTCGACGCCACGGTNTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTACCGATAATGGGCGAGGTGCAGCTGACCGGAACGGGACGGCGAGACGGCGTACCGGNTCTTCGAGCTACCAGNGCGATAGACGAGAACGCGATCCCCGNCCGGACTATTATGGCCGTCNGCNGAACTGGCNACNGGTGGNATCNGGNACTAATTCTACGACTGTCCGATG]
consensusID : consensus_7692#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 513 fasta sequence
[TCGCCGAGGTTAGTTCATCCCCAGCACAGCAGCGTTGATGATCGCGTTCGCGCCATTAGCCATCCTANCGATCGTTCTATCGGCTAACCCCGGTACAGGCAAATACTTTGCACAACAATCCCTTCGATGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGTGCCTTCCCTGTTCGACGAGGCTGGTCGTCAGAGCTGGTCATCAGCGTGTTGGGGCAATACAGCAGTCGGTTGCGCGCCAGCAGACCCGGCGCCTGCAATCAATCGTTCACCAACGTGCTGCTGAAAGCAGGCGTCGACGCCACGGTTGCTGCACAAGTCTGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCTGGGTGCAGCTGACGAAG]
[+] EMBL AL933216 [TCGCCGAGGTTAGTTCATCCCCAGCACAGCAGCGTTGATGATCGCGTTCGCGCCATTAGCCATCCTANCGATCGTTCTATCGGCTAACCCCGGTACAGGCAAATACTTTGCACAACAATCCCTTCGATGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGTGCCTTCCCTGTTCGACGAGGCTGGTCGTCAGAGCTGGTCATCAGCGTGTTGGGGCAATACAGCAGTCGGTTGCGCGCCAGCAGACCCGGCGCCTGCAATCAATCGTTCACCAACGTGCTGCTGAAAGCAGGCGTCGACGCCACGGTTGCTGCACAAGTCTGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTCGATAATGGGCTGGGTGCAGCTGACGAAG]
consensusID : consensus_7692#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 423 fasta sequence
[CCGCCCACGCGTCCGCCCACGCGTCCGACGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAACACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGGTCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAGGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTTGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGT]
[+] EMBL BM614157 [CCGCCCACGCGTCCGCCCACGCGTCCGACGCGATCAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTACATTGCCACCAACACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTCCGGATCGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGGTCGGCCTTCCCGTTCGACGAGGCGGTCGTCGAGCTGGTCATCAGCGGTTGGGGCAATACGCAGTCGGTTGCGCGCCGCCAGACCCGGCGCCGCAATCAATCGTTCACCAACGTGCTGCTGAAGGAGGCGTCGACGCCACGGTTGCTGCACAAGTCGCGCCCGCTCGTGTTCCAGCTCGAGGTGTTTGATAATGGGCGGGTGCAGCTGACGAAGGACGGCGAGCGGCGTCCGT]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7692#0 ---------------------------------------------------------TCC 3
consensus_7692#3 ------------------------------------------------------------
consensus_7692#1 GGCAGAATCCCCGAGGTTATTTTAAGAAAACGCACGGAATCTCGAACTAATCGCNACG-- 58
consensus_7692#2 --------------------------------------------------TCGCCGAGGT 10
consensus_7692#0 ACCCACGCGTCCGGCACCAGCAGCGT-GATGATCGCGTTCGCGCCATTAGCCATCCTAGC 62
consensus_7692#3 ------------------------------------------------------------
consensus_7692#1 CAGTTCATCCCCAGCACCAGCAGCGT-GATGATCGCGTTCGCGCCATTAGCCATCCTAGC 117
consensus_7692#2 TAGTTCATCCCCAGCAC-AGCAGCGTTGATGATCGCGTTCGCGCCATTAGCCATCCTANC 69
consensus_7692#0 GATCGTTCTATCGGCTAGCCCCGGTACAG-CAAACACTTTGCACAACAATTCCTTCGACG 121
consensus_7692#3 --------------------------CCG-CCCACGC---GTCCGCCCACGCGTCCGACG 30
consensus_7692#1 GATCGTTCTATCGGCTAGCCCCGGTACAG-CAAATACTTTGCACAACAATCCCTTCGATG 176
consensus_7692#2 GATCGTTCTATCGGCTAACCCCGGTACAGGCAAATACTTTGCACAACAATCCCTTCGATG 129
* * * * * * * * * * * *** *
consensus_7692#0 CGAT-CAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTAC 180
consensus_7692#3 CGAT-CAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTAC 89
consensus_7692#1 CGATACAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTAC 236
consensus_7692#2 CGAT-CAAGGGATGTCTCCAGTTCGATGACGTCCCGGGCTACAACGACACCCCGACGTAC 188
**** *******************************************************
consensus_7692#0 ATTGCCACCAACACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTT-CCGGAT 239
consensus_7692#3 ATTGCCACCAACACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTT-CCGGAT 148
consensus_7692#1 ATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTTACCGGAT 296
consensus_7692#2 ATTGCCACCAATACGTTCCGCAATGTGGGGCGCACGAGCAGCTCGCGCTACTT-CCGGAT 247
*********** ***************************************** ******
consensus_7692#0 CGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGG--CCTTCCCGTTC 297
consensus_7692#3 CGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGGTCGG--CCTTCCCGTTC 206
consensus_7692#1 CGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGG---CTTCCCGTTC 353
consensus_7692#2 CGGTATCATGGGCAAGAACGATGGCCACATTCGGTTCGGCCGATCGTGCCTTCCCTGTTC 307
****************************************** *** * ** ****
consensus_7692#0 GACGAGGC-GGTCGTC-GAGCTGGTCATCAGCG-GTTGGGGCAATAC-GCAGTCGGTTGC 353
consensus_7692#3 GACGAGGC-GGTCGTC-GAGCTGGTCATCAGCG-GTTGGGGCAATAC-GCAGTCGGTTGC 262
consensus_7692#1 GACGAGGC-GGTCGTC-GAGCTGGTCATCAGCG-GTTGGGGCAATAC-GCAGTCGGTTGC 409
consensus_7692#2 GACGAGGCTGGTCGTCAGAGCTGGTCATCAGCGTGTTGGGGCAATACAGCAGTCGGTTGC 367
******** ******* **************** ************* ************
consensus_7692#0 GCGCCGCCAGACCCGGCGC-CGCAATCAATCGTT-CACCAACGTGCTGCTGAAAG-AGGC 410
consensus_7692#3 GCGCCGCCAGACCCGGCGC-CGCAATCAATCGTT-CACCAACGTGCTGCTGAAGG-AGGC 319
consensus_7692#1 GCGCC-GCAGACCGGGC---CGCAATCAATCGTTACACCAACGTGCTGCTGAAAG-AGGC 464
consensus_7692#2 GCGCCAGCAGACCCGGCGCCTGCAATCAATCGTT-CACCAACGTGCTGCTGAAAGCAGGC 426
***** ****** *** ************* ****************** * ****
consensus_7692#0 GTCGACGCCACGGTT-GCTGCACAAGTC-GCGCCCGCTCGTGTTCCAGCTCGAGGTGT-T 467
consensus_7692#3 GTCGACGCCACGGTT-GCTGCACAAGTC-GCGCCCGCTCGTGTTCCAGCTCGAGGTGT-T 376
consensus_7692#1 GTCGACGCCACGGTNTGCTGCACAAGTC-GCGCCCGCTCGTGTTCCAGCTCGAGGTGTAC 523
consensus_7692#2 GTCGACGCCACGGTT-GCTGCACAAGTCTGCGCCCGCTCGTGTTCCAGCTCGAGGTGT-T 484
************** ************ *****************************
consensus_7692#0 CGATAATGGGCG-GGTGCAGCTGACGAAG----GACGGCGAG-CGGCGTCCGTTCTTCGA 521
consensus_7692#3 TGATAATGGGCG-GGTGCAGCTGACGAAG----GACGGCGAG-CGGCGTCCGT------- 423
consensus_7692#1 CGATAATGGGCGAGGTGCAGCTGACCGGAACGGGACGGCGAGACGGCGTACCGGNTCTTC 583
consensus_7692#2 CGATAATGGGCTGGGTGCAGCTGACGAAG------------------------------- 513
********** ************
consensus_7692#0 GTACAGCGATAGCGAGAACGCGATCCCGCCGGACTATATGGCGTTCGTGAAGTGGGACGT 581
consensus_7692#3 ------------------------------------------------------------
consensus_7692#1 GAGCTACCAGNGCGATAG-ACGAGAACGCGATCCCCGNCCGGACTATTATGGCCGTCNGC 642
consensus_7692#2 ------------------------------------------------------------
consensus_7692#0 GGATCTGGTCTACTTCTACGACTGTCCGCTGAACGATGGTGGGGCAGGGGCGGTGGGCGA 641
consensus_7692#3 ------------------------------------------------------------
consensus_7692#1 NGAACTGGCNACNGGTGGNATCNGGNACTAATTCTACGACTGTCCGATG----------- 691
consensus_7692#2 ------------------------------------------------------------
consensus_7692#0 GGAGTCGGTGCTGCTGCGCTGCAGCCTTGCTTGAGGTTGAAGGTTAAGGTCAAACGGTGT 701
consensus_7692#3 ------------------------------------------------------------
consensus_7692#1 ------------------------------------------------------------
consensus_7692#2 ------------------------------------------------------------
consensus_7692#0 AAGGGAATTGGAATTAATAAATATGAA 728
consensus_7692#3 ---------------------------
consensus_7692#1 ---------------------------
consensus_7692#2 ---------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||