These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7703#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 915 fasta sequence [TACATTTTCAATATTAATAATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAATTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACGGTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCACAAAACGGGAGACAATTAATGGACTTTCCCGGTGTGCACTCTAGGGT-ATAGATAGCTGGTTCGGCTTTGGTACCAGTGGAAACACACGCAATGAGCAGTGGAGGATAAGGAACGCCTTAGCTCCCCACTACCATACCGTTTTAGTACATTTGTTTTTTTTTTTCGATTCTTTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGGTAGAGCCATGTTTGTTTTCGAATGATTCAATACGATAGGAGAAAGGTGTGCCGTT] [-] EMBL BX618253 [TACATTTTCAATATTAATAATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAATTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTCGTGACGATTG ] [-] EMBL BX617605 [ AATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAATTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGGTTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGAGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTC ] [+] EMBL AGA282527 [ GCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAGCAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATTATGTTAATTATAATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGT ] [-] EMBL BX617375 [ AATAAGTTACTTGTTTTACTGCTTTGCCTGCTTACTAATTTATATGCCTCTCCTCTCTTTTGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGTATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATTATTTTAGCATTAGGACAAAGCAACATAAAAAGACACTCTTTTTCTGCAACTAGAAAACGGAAATAGAAGCGCTCGCGTAGGGCAAAGGATCGAGATATAAATCAAGATCAAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACACCTGTCCCTGTTTATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACGGTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCACAAAACGGGAGACAATTAATGGACTTTCCCGGTGTGCACTCTAGGGT ATAGATAGCTGGTTCGGCTTTGGTACCAGTGGAAACACACGCAATGAG ] [-] EMBL BX611175 [ TTTAGCATAAGGACAAAGCAACACAAAAAGACACTCTTTTTCTGCAACTAAAAGGCTGAAACAGAAGCGCTCGCGTAGGGCAAACGATCGAGATATAAATCAAGATCGAGCTGAATTGCATTCAGCATCAACAACGCAAAGGATAGATTCTCTGCTA ACACTTGTTGTTACACCTGTTCCTGTTTATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACGGTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCACAAAACGGGAGACAATTAATGGACTTT CCGGTGTGCACACTAGGGTAATAGATAGCTGGTTCGGCTTTGGTACCAGTGGAAACACACGCAATGAGCAGTGGAGGATAAGGAACGCCTTAGCTCCCCACTACCATACCGTTTTAGTACATTTGTTTTTTTTTTTCGATTCTTTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGGTAGAGCCATGTTTGTTTTCGAATGATTCAATACGATAGGAGAAAGGTGTGCCGTT] consensusID : consensus_7703#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 720 fasta sequence [CCCGNGGTTAAATCAATCAGGATAGTATGCCGTTGGGGGTAATATAGTTGCCGGATGGAGCTGTTTAATATGCATATTACCGTTTGGATTTGGCAGAAATGAGTCATNTTCTGCGCTATTTGTCGGACGCAAATGCAGTCTNTACTATNTATCTATGTATATATATTTGCTATCAATTTACTAGACACCCATGCAACCGTATGTACACTCGGATAANGTAGTTGGCGAACCGGTACACCCTNTATCTACCTAATCGGTTATTTGAANATTGAAAGCATTACGGAAACACAATNNTTGGAAAACCCCAATTATGGANCAAAACAAACTTTCCGGAGACAACCAAAAAACGCATTGGGGCCTTCCTTANTTCCCGGCATACTACCTTCCTNGGGAGCCTCGGTTGGACAACATCGGACAGAGCACCAATTAATTAACCAAAGGGNGGGGGAACACNAAANGACAAATTCCAGGGACAAAAGAACAGACCACACACATTGGTTAACCTTTCGANAACAGAACTTAGGNACCATTTGACGGCCAAGGGATAAGGGAGCGAAANGCCTNCATTAGGGGCCTTATAAAGACGCCTTTATGAAATTAANCGCCTTCCCCCAACCTNGGGTTACCCCATTATACGGCGCACGTTCGTTAGGTTACATACCACCAACCATAAGGGGGTACAACTCGCAAAAAAGGGCCCCCAGACAAACATCAAACGAC] [+] EMBL AL695681 [CCCGNGGTTAAATCAATCAGGATAGTATGCCGTTGGGGGTAATATAGTTGCCGGATGGAGCTGTTTAATATGCATATTACCGTTTGGATTTGGCAGAAATGAGTCATNTTCTGCGCTATTTGTCGGACGCAAATGCAGTCTNTACTATNTATCTATGTATATATATTTGCTATCAATTTACTAGACACCCATGCAACCGTATGTACACTCGGATAANGTAGTTGGCGAACCGGTACACCCTNTATCTACCTAATCGGTTATTTGAANATTGAAAGCATTACGGAAACACAATNNTTGGAAAACCCCAATTATGGANCAAAACAAACTTTCCGGAGACAACCAAAAAACGCATTGGGGCCTTCCTTANTTCCCGGCATACTACCTTCCTNGGGAGCCTCGGTTGGACAACATCGGACAGAGCACCAATTAATTAACCAAAGGGNGGGGGAACACNAAANGACAAATTCCAGGGACAAAAGAACAGACCACACACATTGGTTAACCTTTCGANAACAGAACTTAGGNACCATTTGACGGCCAAGGGATAAGGGAGCGAAANGCCTNCATTAGGGGCCTTATAAAGACGCCTTTATGAAATTAANCGCCTTCCCCCAACCTNGGGTTACCCCATTATACGGCGCACGTTCGTTAGGTTACATACCACCAACCATAAGGGGGTACAACTCGCAAAAAAGGGCCCCCAGACAAACATCAAACGAC] consensusID : consensus_7703#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 550 fasta sequence [GGTTCGGCATTTGGTACCAGTGGAAACACACGCAATGACAGTGGAGGATAAGGAAAGCCATAGCTCCCCACTGCCATACAGTTTTAGGCATTTTGTTTTTCCAGATTCATTGTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGATAGAGCCATGTTTGTTTTCGAANTTNTGTTCAATGGTTCAAATGGTTCGAATGGTTTCATTTCAATACGATAGGAGAAAGGTGTACCGTTCGCCACTACAAATCGAGGTACAACGGTGCATGGGTGCTAGTAAATTGAAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGTCCGACAAAATAGCGCAGAAATGACTCATTTCTGCCAAATCCAAACGGTAATATGCATATTAAACAGCTCCATCCGGCAACTCTATTACCCCCAACGGCATACTATCCTGA-TTGATTTCNT-GGGTTTATGAGCTTAAANAACCTCGATTCGCCTTACTCCAATACCATAAACAACTCAAGACAGTTGCTCATCTTCTCTTCAACAGTAGCTTTCAAACAAAA] [-] EMBL AL929943 [GGTTCGGCATTTGGTACCAGTGGAAACACACGCAATGACAGTGGAGGATAAGGAAAGCCATAGCTCCCCACTGCCATACAGTTTTAGGCATTTTGTTTTTCCAGATTCATTGTTCCACTGTATATGTGCTTCGTTCACAGCCAGAGAAACGGATAGAGCCATGTTTGTTTTCGAANTTNTGTTCAATGGTTCAAATGGTTCGAATGGTTTCATTTCAATACGATAGGAGAAAGGTGTACCGTTCGCCACTACAAATCGAGGTACAACGGTGCATGGGTGCTAGTAAATTGAAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGTCCGACAAAATAGCGCAGAAATGACTCATTTCTGCCAAATCCAAACGGTAATATGCATATTAAACAGCTCCATCCGGCAACTCTATTACCCCCAACGGCATACTATCCTGA TTGATTTCNT GGGTTTATGAGCTTAAANAACCTCG ] [-] EMBL AGA280899 [ GTGCTTCGTTCACAGCCAGAGAAACGGATAGAGCCATGTTTGTTTTCGAA TT TTTTCAATGGTTCAAATGGTTCGAATGGTTTCATTTCAATACGATAGGAGAAAGGTGTACCGTTCGCCACTACAAATCGAGGTACAACGGTGCATGGGTGCTAGTAAATTGAAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGTCCGACAAAATAGCGCAGAAATGACTCATTTCTGCCAAATCCAAACGGTAATATGCATATTAAACAGCTCCATCCGGCAACTCTATTACCCCCAACGGCATACTATCCTGATTTGATTTCCTGGGGTTTATGAGCTTTAAAAGTGAATATTCGCCTTACTCCAATACCATAAACAACTCAAGACAGTTGCTCATCTTCTCTTCAACAGTAGCTTTCAAACAAAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7703#0 TACATTTTCAATATTAATAATGATCCTTTATTCATTACATTGCTCTTCTTTCCAACATAA 60 consensus_7703#2 ------------------------------------------------------------ consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 TTTGCCCGGATGCTGCGCTGCGTCCATCCGCAGGGTACGGCCCCCCTTTTTCTCTGCCAG 120 consensus_7703#2 ------------------------------------------------------------ consensus_7703#1 ------------------------------------------------------------ consensus_7703#0 CAAGCGTGATAGCACGACTGTCTGACGGCCGGCCCGTGCCCAGTATGCTGCTGCCGAATT 180 consensus_7703#2 -------GGTTCGGCATTTGG-TACCAGTGGAAACACACGCA--ATGACAGTGGAGGATA 50 consensus_7703#1 ----------CCCGNGGTTAAATCA-ATCAGGATAGTATGCCG-TTGGGGGTAATATAGT 48 * * * * ** * * consensus_7703#0 ATGTTAATTATAATAAGTTACTTGTTTTACTGCTTT-GCCTGCTTACTAATTTATATGCC 239 consensus_7703#2 AGGAAAGCCATAGCTCCCCACT-GCCATACAGTTTTAGGCATTTTGTTTTTCCAGATTCA 109 consensus_7703#1 -TGCCGGATGGAGCTGTTTAATATGCATATTACCGTTTGGATTTGGCAGAAATGAGTCAT 107 * * * * ** * * * consensus_7703#0 TCTCCTCTCTTT-TGCTCGATTTGAATGCAACCTAACCGCGTTACGCATCTCATGCGTGT 298 consensus_7703#2 TTGTTCCACTGTATATGTGCTTCGTTCACAGCCAGA----GAAACGGAT---AGAGCCAT 162 consensus_7703#1 NTTCTGCGCTATTTGTCGGACGCAAATGCAGTCTNTACTATNTATCTAT---GTATATAT 164 * ** * * * ** * * ** * consensus_7703#0 ATTAGCTGCTTGCCTGCTGTTACACGAGTTACTTGAAGAAGATGATTTTAGCATTAGGAC 358 consensus_7703#2 GTTTGTTTTCGAANTTNTGTTCAATGGTTCAAATGGTTCGAATGGTTT---CATTTCAAT 219 consensus_7703#1 ATTTGCTATCAATTTACTAGACACCCATGCAACCGTAT-GTACACTCG----GATAANGT 219 ** * * * * * * * * * consensus_7703#0 AAAGCAACATAAAAAGACACTCTTTTTCTGC---AACTAGAAAACGGAAATAGAAGCGCT 415 consensus_7703#2 ACGATAGGAGAAAGGTGTACCGTTC----GC---CACTACAAATCG-AGGTACAACGGTG 271 consensus_7703#1 A-GTTGGCGAACCGGTACACCCTNTATCTACCTAATCGGTTATTTGAANATTGAAAGCAT 278 * * ** * * * * * * * ** consensus_7703#0 CGCGTAGGGCAAAGGATCG--AGATATAAAT--CAAGATCAAGCTGAATTGCATTCAGCA 471 consensus_7703#2 CATGGGTGCTAGTAAATTG--AAGCAAAAATAACATAGAAAAGAAAGACTGCATTTGCGT 329 consensus_7703#1 TACGGAAACACAATNNTTGGAAAACCCCAATTATGGANCAAAACAAACTT---TCCGGAG 335 * * * * *** ** * * consensus_7703#0 TCAACAACGCAAAGGATAGATTCTCTGCTACACACTTGTTGTTACAC--CTGTCCCTGTT 529 consensus_7703#2 CCGACAAAATAGCGCAGAAAT-------GACTCATTT-CTGCCAAAT--CCAAACGGTAA 379 consensus_7703#1 ACAACCAAAAAACGCATTGGGGCCT---TCCTTANTTCCCGGCATACTACCTTCCTNGGG 392 * ** * * * * * * ** * * * * * consensus_7703#0 TATGTCTCTCGTGACGATTGATCGAATGTAAAAATGGTGTTTGTAAAAGCCTTCCAAACG 589 consensus_7703#2 TATGCATATTAAACAGCTCCATCCG--GCAACTCTATTACCCCCAACGGCATACTATCCT 437 consensus_7703#1 AGCCTCGGTTGGACAACATCGGACAGAGCACCAATTAATTAACCAAAGGGNGGGGGAAC- 451 * * * * ** * * consensus_7703#0 GTGACGTGTATAAATGGTTCAGTTTCATGGGTGAGACAAGCGAGCGAGCGTACCGTTCAC 649 consensus_7703#2 G--------ATTGATTTCNTGGGTTTATGAGCTTAAANAACCTCGATTCGCCTTACTC-C 488 consensus_7703#1 ---------ACNAAANGACAAATTCCAGGGACAAAAGAACAGACCACACACATTGGTT-- 500 * * * * * * * * * consensus_7703#0 AAAACGGGAGACAATTAATGGACTTTCCCGGTGTGCACTCTAGGGTATAGATAGCTGGTT 709 consensus_7703#2 AATACCATAAACAACTCAAGACAGTTGCTCATCTTCTCTTCAACA-GTAGCTTTCAAACA 547 consensus_7703#1 -AACCTTTCGANAACAGAACTTAGGNACC-ATTTGACGGCCAAGGGATAAGGGAGCGAAA 558 * * * ** * * * * * ** consensus_7703#0 CGGCTTTGGTACCAGTGGAAACACACGCAATGAGCAGTGGAGGATAAGGAACGCCTTAGC 769 consensus_7703#2 AAA--------------------------------------------------------- 550 consensus_7703#1 NGCCTNCATTA-----GGGGCCTTATAAAGACGCCTTTATGAAATTAANCGCCTTCCCCC 613 consensus_7703#0 TCCCCACTACCATACCGTTTTAGTACATTTGTTTTTTTTTTTCGATTCTTTTCCACTGTA 829 consensus_7703#2 ------------------------------------------------------------ consensus_7703#1 AACCTNGGGTTACCCCATTATACGGCGCACGTTCGTTAGGTTACATACCAC-CAACCATA 672 consensus_7703#0 TATGTGCTTCGTTCACAGCCAGAGAAACGGGTAGAGCCATGTTTGTTTTCGAATGATTCA 889 consensus_7703#2 ------------------------------------------------------------ consensus_7703#1 AGGGGGTACAACTCGCAAAAAAGGGCCCCCAGACAAACATCAAACGAC------------ 720 consensus_7703#0 ATACGATAGGAGAAAGGTGTGCCGTT 915 consensus_7703#2 -------------------------- consensus_7703#1 -------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||