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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7709#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1086 fasta sequence
[GCCTCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG-ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT-AACCTCGG-ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTAACAT---CAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGGTAGCGATCGG]
[+] EMBL CNS09H2D [GCCTCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCG CAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGTTGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAG ]
[+] EMBL CNS09N65 [ TCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTACAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTG CAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTA ]
[+] EMBL CNS09N5B [ GAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAGCGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAAGGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGAACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATCCGGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTACGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGTTTTTTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTAAAGGCCCTGCTGGGTTAAG ]
[-] EMBL CNS09H2E [ GGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCGAAAAAAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGGCGTCGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGGAATCC GCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGAAACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAAGTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTAACAT CAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGGTAGCGATCGG]
[-] EMBL CNS09N5C [ AAGCAGATCGCCGTCGACAAGCAGTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCCG ACCCAGGCCCTGACCTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGAAAAAAACAACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGT AACCTCGG ATTCCGCGGTGCCGCCGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTCTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGAAACTGCCAAGGGAATGCTGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCGGCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTACTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAAGTTAAGGCCCTGCTGGGTTAAGACGGGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCAGCAGCAGTAACATCAACAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGGTAGCGATCGG]
[-] EMBL CNS08N3F [ ttTTCCTGGGTAAAAAAAAA ATCC GCGGTGCCGCCGGTGCCACGTCGTTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGCGGACGTTGGTCGCGGTGCCGGCGAGCGTGAGTTCAACGGTCTGCTCGACTGTTTGAAGAAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAGGGTATCATCATCTATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAGGGAATGCTGCCGGACCCGAAGAAAACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGACGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACAACGCATGATGATGCAGTCTGGCCGTGCCAAGTCGGAGGTGATGTACAAG ]
consensusID : consensus_7709#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 384 fasta sequence
[CCCCGCGCTACGACATGGATCGGTCCGGCGTCGGGTCCCGGGCGTCACCGCGCCAGGCGGACGTCATCATCGGGGCCGGCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCAAGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGACGGGTAGCGGCGCGAACGGGGGCGGCTACAACCACTACACCCACACGGTGGTGCGCGGCTGCGACCGGATCACCCCGGTCGACATCAACGTGCCCGGCGGCCCGCCCACCGCCGAGGCGCTGCGGGACGGCGGGCTGCAGAGGCAGAAGAAGGGCAAGCGCATGAAGACGCTGCAGAAGTGGTACCGCAAATAGATAGTGTGCCTCCATCCCGTTTCGTCCTGGCCCC]
[+] EMBL BX613205 [CCCCGCGCTACGACATGGATCGGTCCGGCGTCGGGTCCCGGGCGTCACCGCGCCAGGCGGACGTCATCATCGGGGCCGGCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCAAGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGACGGGTAGCGGCGCGAACGGGGGCGGCTACAACCACTACACCCACACGGTGGTGCGCGGCTGCGACCGGATCACCCCGGTCGACATCAACGTGCCCGGCGGCCCGCCCACCGCCGAGGCGCTGCGGGACGGCGGGCTGCAGAGGCAGAAGAAGGGCAAGCGCATGAAGACGCTGCAGAAGTGGTACCGCAAATAGATAGTGTGCCTCCA ]
[+] EMBL BX612336 [ ACCGCGCCAGGCGGACGTCATCATCGTGGCCGGCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCAAGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGAAGGGTAGCTGCGCGAACGGGGGCGGCTACTACCACTACACCTACCCGGTGGTGCGCGGCTGCGACCGGATCACCCCGGTCGACATCAACGCGCCCGGCGGCCCGCCCACCGCCGAGGCGCTGCTGGACGGCGGGCTGCAGTTGCAGAAGAAGGGCAAGCGCATGAATACGCTGCAGAAGTGGTACCGCAAATAGATAGGGTGCCTCCCTCCCGTTTCGTCCTGGCCCC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7709#0 GCCTCCGAACGGTTAAGGCCTCGACCGCGTGCTCCGCCGGGTTTTTCTTACAGTTGCTAG 60
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 CGTCACCAGACCAGATCCATCGAAAATGACCAAGAAGGCTGATCCCTATGGCTTCGCCAA 120
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 GGATTTCCTGGCCGGTGGTATCTCTGCCGCTGTCTCGAAAACGGCCGTAGCACCGATCGA 180
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 ACGCGTCAAGCTGCTGCTCCAGGTCCAGGCTGCCTCCAAGCAGATCGCCGTCGACAAGCA 240
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 GTACAAGGGAATCGGTGCCTTCTGGCGCGGTAACTTGGCCAACGTGATCCGTTACTTCCC 300
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 GACCCAGGCCCTGAACTTCGCGTTCAAGGATGTGTACAAACAGGTGTTCCTCGGCGACGT 360
consensus_7709#1 -------------------------------------------------CCCCGCG-CTA 10
* * *** *
consensus_7709#0 CGACAAGAACACCCAGTTCTGGCGCTACTTCCTGGGTAACCTCGGATCCGGCGGTGCCGC 420
consensus_7709#1 CGACATGGA----TCGGTCCGGCGTCGGGTCCCGGGCGTCACCGCGCCAGGCGG------ 60
***** * * * ** **** *** *** * ** * *****
consensus_7709#0 CGGTGCCACGTCGCTCTGCTTCGTGTACCCGCTCGACTTCGCCCGTACCCGTCTCGGTGC 480
consensus_7709#1 ----ACGTCATCA-TCGGGGCCG-GCACGCTGACGAACAAGAAGGCACCGGCCCTGCGCA 114
* * ** ** * ** * ** * *** * * *** * * *
consensus_7709#0 GGACGTTGGTCGCGGTGCCGGCGA-GCGTGAGTTCAACGGTCTGCTCGACTGTCTGAA-G 538
consensus_7709#1 AGGGGTACGACCAGATGCCGGAACCGCGCTGGGTCACCACGACGGGTAGCGGCGCGAACG 174
* ** * * * ****** *** * *** * * * * *** *
consensus_7709#0 AAGACGGTCAAGTCGGACGGTATCATCGGTCTGTACCGTGGATTCAACGTGTCCGTTCAG 598
consensus_7709#1 GGGGCGGCTACAACC-ACTACACCCACACGGTGGTGCGCGGCTGCGACCGGATCACCCCG 233
* *** * * ** * * * ** ** ** * * ** * * * *
consensus_7709#0 GGTATCATCATC-TATCGTGCGGCCTACTTCGGTTGCTTCGATACTGCCAAG-GGAATGC 656
consensus_7709#1 GTCGACATCAACGTGCCCGGCGGCCCGCCC--ACCGCCGAGGCGCTGCGGGACGGCGGGC 291
* ***** * * * ****** * ** * **** ** **
consensus_7709#0 TGCCGGACCCGAAGAACACCTCCATCTTCGTCTCGTGGGCCATCGCACAGGTGGTGACGA 716
consensus_7709#1 TGCAGAGGCAGAAGAAGGG---CAAGCGCATG----AAGACGCTGCAGAAGTGGTACCGC 344
*** * * ****** ** * * * * *** * ***** **
consensus_7709#0 CGGCTTCCGGTATTATTTCGTATCCTTTCGATACCGTCAGACGACGCATGATGATGCAGT 776
consensus_7709#1 AAATAGATAGTGTGCCTCCATCCCGTTTCGTCCTGGCCCC-------------------- 384
** * * * * * ***** * *
consensus_7709#0 CTGGCCGTGCCAAGTCGGAGGTGATGTACAAGAACACGCTCGACTGCTGGGTCAAGATCG 836
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 GCAAGCAGGAAGGTTCCGGCGCGTTCTTCAAGGGCGCTTTCTCGAACGTCCTGCGTGGTA 896
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 CTGGTGGCGCTCTGGTGCTCGTATTCTACGACGAATTTAAGGCCCTGCTGGGTTAAGACG 956
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 GGGAACAGCACGCACCTTAGTGTAATTAGTTATGTCCAGCCAGCCAGAACAGCAGCAGCA 1016
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 GCAGCAGTAACATCAACAACAACAACCATTATAACATCCAAATCAACACACACTTACCGG 1076
consensus_7709#1 ------------------------------------------------------------
consensus_7709#0 TAGCGATCGG 1086
consensus_7709#1 ----------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||