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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7720#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 898 fasta sequence
[CCGGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTGAATAATCACTATTTTCGATATATTTATTCTTATCGATGTTGCTTTTCCTTTTCTTCGCTGTTACTCGTTTGTCGAGCTTCTTCAAACTTGAAATCGATTGGTTTGTCGTAACCCATTATTTTGATGTAATGTGTAGGATCGGGAAACAGCTGCGGATCGACAAAGAAGGCTTTATTTTTCACCAAAAATGTCGTAAACAAACCACCAACTTCCGGCACGGTAACATCCTCAATTTTAAAAGCCGTCTTTTCCCGCTGAAGGAAAAACGTTATCG-TTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATCGGTAATGTATCGTTTTGTGACCAAGTGCAGCAGTATCGGTGTGACGAAGGTGAAGAATCCGGCAAACCCACAAACGGCCACTATCATCGGCATACCGCCTACCTTGCTGGCTTGTTCGAGCAAAATC-GGTTGCGCAACGATGCCGCCTATGCTGGTGGCCAACGAGAACACCTTTACCGCCCGTATTTGTGGCGTGAGACTCCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCA-CTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCGGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAATGGAACTACACTCTTCTACCGGCGACCTGCTGCAAACAACGAAACGCAAAAATCCAGTGGGCCAACAG]
[-] EMBL CNS096HX [CCGGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTGAATAATCACTATTTTCGATATATTTATTCTTATCGATGTTGCTTTTCCTTTTCTTCGCTGTTACTCGTTTGTCGAGCTTCTTCAAACTTGAAATCGATTGGTTTGTCGTAACCCATTATTTTGATGTAATGTGTAGGATCGGGAAACAGCTGCGGATCGACAAAGAAGGCTTTATTTTTCACCAAAAATGTCGTAAACAAACCACCAACTTCCGGCACGGTAACATCCTCAATTTTAAAAGCCGTCTTTTCCCGCTGAAGGAAAAACGTTATCG TTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATCGGTAATGTATCGTTTTGTGACCAAGTGCAGCAGTATCGGTGTGACGAAGGTGAAGAATCCGGCAAACCCACAAACGGCCACTATCATCGGCATACCGCCTACCTTGCTGGCTTGTTCGAGCAAAATC GGTTGCGCAACGATGCCGCCTATGCTGGTGGCCAACGAGAACACCTTTACCGCCCGTATTTGTGGCGTGAGACTCCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCA CTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAAC ]
[+] EMBL AGA284574 [ TTTTTTTTTTTGAATAATCACTAGTTTCGATATATTTATTCTTATCGATGTTGCTTTTCCTTTTCTTCGCTGTTACTCGTTTGTCGAGCTTCTTCAAACTTGAAATCGATTGGTTTGTCGTAACCCATTATTTTGATGTAATGTGTAGGATCGGGAAACAGCTGCGGATCGACAAAGAAGGCTTTATTTTTCACCAAAAATGTCGTAAACAAACCACCAACTTCCGGCACGGTAACATCCTCAATTTTAAAAGCCGTCTTTTCCCGCTGAAGGAAAAACGTTATCG TTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATCGGTAATGTATCGTTTTGTGACCAAGTGCAGCAGTATTGGTGTGACGAAGGTGAAGAATCCGGCAAACCCACAAACGGCCACTATCATCGGCATACCGCCTACCTTGCTGGCTTGTTCGAGCAAAATCGGGTTGCGCAACGATGCCGCCCATGCTGGTGGCCAA ]
[+] EMBL CNS096HY [ TTTTTTTTTTGAATAATCACTATTTTCGATATATTTATTCTTATCGATGTTGCTTTTCCTTTTCTTCGCTGTAACTCGTTTGTCGAGCTTCTTCAAACTTGAAATCGATTGGTTTGTCGTAACCCATTATTTTGATGTAATGTGTAGGATCGGGAAACAGCTGCGGATCGACAAAGAAGGCTTTATTTTTCACCAAAAATGTCGTAAACAAACCACCAACTTCCGGCACGGTAACATCCTCAATTTTAAAAGCCGTCTTTTCCCGCTGAAGGAAAAACGTTATCG TTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATCGGTAATGTATCGTTTTGTGACCAAGTCCAGCAGTTTCGGTGTGACGAAGGTGAAGAATCCGGCAAACCCACAAACGGCCACTATCATCGGCATACCGCCTACCTTGCTGGCTTGTTCGAGCAAAATC GGTTGCGCAACGATGCCGCCTATCCTGGTGGCCAACGAGAACACCTTTACCGCCCGTATTTGTGGCGTGAGAATCCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGAATCTTGAGCA CTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCGGAGCGAATTCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAATGGAACTACACTCTTCTACCGGCGACCTGCTGCAAACAACGAAACGCAAAAATCCAGTGGGCCAACAG]
[-] EMBL BX608036 [ TTGATGTAATGTGTAGGATCGGGAAACAGCTGCGGATCGACAAAGAAGGCTTTATTTTTCACCAAAAATGTCGTAAACAAACCACCAACTTCCGGCACGGTAACATCCTCAATTTTAAAAGCCGTCTTTTCCCGCTGAAGGAAAAACGTTATCG TTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATCGGTAATGTATCGTTTTGTGACCAAGTGCAGCAGTATTGGTGTGACGAAGGTGAAGAATCCGGCAAACCCACAAACGGCCACTATCATCGGCATACCGCCTACCTTGCTGGCTTGTTCGAGCAAAATC GGTTGCGCAACGATGCCGCCTATGCTGGTGGCCAACGAGAACACCTTTACCGCCCGTATTTGTGGCGTGAGACTCCCGTAGTACACTCGG ]
[-] EMBL BM578462 [ GTTATCGCTTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATCGGTAATGTAACGTTTTGTGACCAAGTGCAGCAGTATCGGTGTGACGAAGGTGAAGAATCCGGCAAACCCGCAAACGGCCACTATCATCGGCATACCGCCTACCTTGCTGGCTTGTTCGAGCAAAATC GGTTGCGCAACGATGCCGCCTATGCTGGTGGCCAACGAGAACACCTTTACCGCCCGTATTTGTGGCGTGAGACTGCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCA CTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATCTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCTGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAATGGAACTACTCTCTTCTACCGGCGACCTGCcgg ]
[-] EMBL AGA285933 [ ACTCCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCACCTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCGGAGCGAATGCATGCTTC ]
consensusID : consensus_7720#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 555 fasta sequence
[ATCCGGTAATGTTATCGTTTTGTGACCAAGTGCACCAGTATCGGTGTGCACGAAGGTGAAGAATCCGGCAAACCCACAAGACGGCCACTATCATCGGCATACCGCGCTACCTTGCTGGCTTGTTCGAGCAAAATCGGTTGCGCAACGATGCCGCCTATGCTGGTGGCCAACGAGAACACCTTNTACCGCCCGTATTTCGTGGCGTGAGACTCCCGTAGTACACTCGGTCGCCCAGATTGGTGCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCCGGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAAGTGGAACTACACTCTTCTACCGGCGACCTGCTGCAAACTAACCTCGTGGNGATTCTGCCTGAGCTACGGGCC]
[-] EMBL BX466454 [ATCCGGTAATGTTATCGTTTTGTGACCAAGTGCACCAGTATCGGTGTGCACGAAGGTGAAGAATCCGGCAAACCCACAAGACGGCCACTATCATCGGCATACCGCGCTACCTTGCTGGCTTGTTCGAGCAAAATCGGTTGCGCAACGATGCCGCCTATGCTGGTGGCCAACGAGAACACCTTNTACCGCCCGTATTTCGTGGCGTGAGACTCCCGTAGTACACTCGGTCGCCCAGATTGGTGCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCCGGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAAGTGGAACTACACTCTTCTACCGGCGACCTGCTGCAAACTAACCTCGTGGNGATTCTGCCTGAGCTACGGGCC]
consensusID : consensus_7720#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence
[GNGATGCCGCNGTATGCTGGTGGCCAACGAGAACACCTGTTACCGCCCGTATTTGGTGGCGTGAGACTGCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATCTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCTGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAATGGAACTACTCTCTTCTAGCGGCGACCTGCTGCAAACAACGAAAGCGCCCTCGTGCCNAATTAATGG]
[-] EMBL AL694584 [GNGATGCCGCNGTATGCTGGTGGCCAACGAGAACACCTGTTACCGCCCGTATTTGGTGGCGTGAGACTGCCGTAGTACACTCGGTCGCCCAGATTGTCGTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAGCATCCGCATGGATGTTGCTGAATCTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAATATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGGCAGCGTTAACCTGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAATGGAACTACTCTCTTCTAGCGGCGACCTGCTGCAAACAACGAAAGCGCCCTCGTGCCNAATTAATGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7720#0 CCGGCAGCTCGGGCACATGTGGCCTTTTTTTTTTTTTTTTTTGAATAATCACTATTTTCG 60
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 ------------------------------------------------------------
consensus_7720#0 ATATATTTATTCTTATCGATGTTGCTTTTCCTTTTCTTCGCTGTTACTCGTTTGTCGAGC 120
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 ------------------------------------------------------------
consensus_7720#0 TTCTTCAAACTTGAAATCGATTGGTTTGTCGTAACCCATTATTTTGATGTAATGTGTAGG 180
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 ------------------------------------------------------------
consensus_7720#0 ATCGGGAAACAGCTGCGGATCGACAAAGAAGGCTTTATTTTTCACCAAAAATGTCGTAAA 240
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 ------------------------------------------------------------
consensus_7720#0 CAAACCACCAACTTCCGGCACGGTAACATCCTCAATTTTAAAAGCCGTCTTTTCCCGCTG 300
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 ------------------------------------------------------------
consensus_7720#0 AAGGAAAAACGTTATCGTTGTGGCCGTATACTGCTGCTTGGAAGGATCGTAGTGCAGATC 360
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 --------------------------------------------------------ATCC 4
consensus_7720#0 GGTAATGT-ATCGTTTTGTGACCAAGTGCAGCAGTATCGGTGTG-ACGAAGGTGAAGAAT 418
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 GGTAATGTTATCGTTTTGTGACCAAGTGCACCAGTATCGGTGTGCACGAAGGTGAAGAAT 64
consensus_7720#0 CCGGCAAACCCACAA-ACGGCCACTATCATCGGCATACCGC-CTACCTTGCTGGCTTGTT 476
consensus_7720#2 ------------------------------------------------------------
consensus_7720#1 CCGGCAAACCCACAAGACGGCCACTATCATCGGCATACCGCGCTACCTTGCTGGCTTGTT 124
consensus_7720#0 CGAGCAAAATCGGTTGCGCAACGATGCCGCC-TATGCTGGTGGCCAACGAGAACACCT-T 534
consensus_7720#2 --------------------GNGATGCCGCNGTATGCTGGTGGCCAACGAGAACACCTGT 40
consensus_7720#1 CGAGCAAAATCGGTTGCGCAACGATGCCGCC-TATGCTGGTGGCCAACGAGAACACCTTN 183
******** **************************
consensus_7720#0 TACCGCCCGTATTTG-TGGCGTGAGACTCCCGTAGTACACTCGGTCGCCCAGATTGT--C 591
consensus_7720#2 TACCGCCCGTATTTGGTGGCGTGAGACTGCCGTAGTACACTCGGTCGCCCAGATTGT--C 98
consensus_7720#1 TACCGCCCGTATTTCGTGGCGTGAGACTCCCGTAGTACACTCGGTCGCCCAGATTGGTGC 243
************** ************ *************************** *
consensus_7720#0 GTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAG 651
consensus_7720#2 GTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAG 158
consensus_7720#1 GTCCTTGGTGTGTTTGGCAGACTCTTGAGCACTGGTGGGTGGCGCTGTTTTCGAACATAG 303
************************************************************
consensus_7720#0 CATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAA 711
consensus_7720#2 CATCCGCATGGATGTTGCTGAATCTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAA 218
consensus_7720#1 CATCCGCATGGATGTTGCTGAATTTTGCCGCTGTTGCAGCAGGCACGAGTTTTGCCTCAA 363
*********************** ************************************
consensus_7720#0 TATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGG 771
consensus_7720#2 TATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGG 278
consensus_7720#1 TATTACGCCTAATGGTGCTCGGAACGCTGAGGAACTAGGCATTGCGCGCACAATTCGTGG 423
************************************************************
consensus_7720#0 CAGCGTTAACC-GGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAA 830
consensus_7720#2 CAGCGTTAACC-TGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAA 337
consensus_7720#1 CAGCGTTAACCCGGAGCGAATGCATGCTTCAGTTGTTTTCTGATAAACTAATTTCAGCAA 483
*********** ***********************************************
consensus_7720#0 -TGGAACTACACTCTTCTACCGGCGACCTGCTGCAAACAACGAAACGCAAAAATCCAGTG 889
consensus_7720#2 -TGGAACTACTCTCTTCTAGCGGCGACCTGCTGCAAACAACGAAA-GCGCCCTCGTGCCN 395
consensus_7720#1 GTGGAACTACACTCTTCTACCGGCGACCTGCTGCAAACTAACCTCGTGGNGATTCTGCCT 543
********* ******** ****************** *
consensus_7720#0 GGCCAACAG--- 898
consensus_7720#2 AATTAATGG--- 404
consensus_7720#1 GAGCTACGGGCC 555
* *
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||