These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7722#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1289 fasta sequence [ACTCAACACCGATCGGAAGTTAAGTAGGCGAGCTTGGTTGGGGCAGCGTCGATCCACAATAGCACCACAACACGTGGCGGAGGAGTTCGAACGTTCCACCAGTTTTTGTTTTATATGTACTTTGTTGTTCTGTTGTGTTGTGGCTTAAATGCTTCCTCTGTGCTATTTTTGTTTGAGTTATAATTTTAACAACTATTGTTAGAGGTTTAGTCCGTAATCGTGGGAAAACGGCACCACCGTGGGAGTGTGTGTGTGTCTGCGACGAACGATAAAATCAAAGCCCAGATGGGGGCAGTGGGGAAAGTCGTTTTCCACACTCGAGTTCTGGTAGAAGTGTTAGGAGTAAGTTACTTAAGCATAAGTTAATAAATTGATCGATTTACCGATCTCTCTTCCAGAAACTAGTTAAGATTTTGCGTTCGTCTCGTTCACCCCTTTCCACTACATTTCCTTCGGCAGTTCCTTGTTCCTACAGCCTGAACCATTTCGGTTAAGAATTTCGTGATTGGGACTACAAAAAATGGAGAAAATATGAATGTATGAATAATAACGGAATGGTGTATAAAGAAAAGTTTAACGAAAGATGTAACATAACGGATGAATGGAGCTTTCTGTAACAAATCCTTTGGCTAGTAACCAAAAAACAGTTTGTTGGATGAAAAGAAATATGAGAAACGATGAAACCTTCCGGCGATCCAGAGCTTTCGTTTACCACCGGAAGGAACTGGCTACAATCACAGGTAAGTGCAGCGTGTGGCAGCCGC------CTCTCTCTCTCTCTCCATACACACCACCCACCGTACCTGCACTGCTTCCTCACACTCCCCGCACTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCCTGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCACCAGTCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCACGCCGGCCGCTTCCCGTCCACCGGCAAACTTGACCCGTATCGTCTTCTCCAGATATTTGCTCAGATCGAGGATGGATTCCTTTCGTCGCTTTTCTTTATTGTCGCCTCCGCCGCCG---CCACCACCACTTCCACCACCACCAGTCGAATTGCCGGATGCCGCTGGCTTCTTATCCGACATGATGCCAATCGAATGTAAAATACACCAGAACTTCTATCAGCGCTGAAACTGCAACGATTCGAAGGGGTTTGTTTACAACAGGCG] [+] EMBL CNS09IZQ [ACTCAACACCGATCGGAAGTTAAGTAGGCGAGCTTGGTTGGGGCAGCGTCGATCCACAATAGCACCACAACACGTGGCGGAGGAGTTCGAACGTTCCACCAGTTTTTGTTTTATATGTACTTTGTTGTTCTGTTGTGTTGTGGCTTAAATGCTTCCTCTGTGCTATTTTTGTTTGAGTTATAATTTTAACAACTATTGTTAGAGGTTTAGTCCGTAATCGTGGGAAAACGGCACCACCGTGGGAGTGTGTGTGTGTCTGCGACGAACGATAAAATCAAAGCCCAGATGGGGGCAGTGGGGAAAGTCGTTTTCCACACTCGAGTTCTGGTAGAAGTGTTAGGAGTAAGTTACTTAAGCATAAGTTAATAAATTGATCGATTTACCGATCTCTCTTCCAGAAACTAGTTAAGATTTTGCGTTCGTCTCGTTCACCCCTTTCCACTACATTTCCTTCGGCAGTTCCTTGTTCCTACAGCCTGAACCATTTCGGTTAAGAATTTCGTGATTGGGACTACAAAAAATGGAGAAAATATGAATGTATGAATAATAACGGAATGGTGTATAAAGAAAAGTTTAACGAAAGATGTAACATAACGGATGAATGGAGCTTTCTGTAACAAATCCTTTGGCTAGTAACCAAAAAACAGTTTGTTGGATGAAAAGAAATATGAGAAACGATGAAACCTTCCGGCGATCCAGAGCTTTCGTTTACCACCGGAAGGAACTGACTACAATCACAGGTAAGTGCAGCGTGTGGCAGCCGC CTCTCTCTCTCTCTCCATACACACCACCCACCGTACCTGCACTGCTTCCTCACACTCCCCGCACTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCCTGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCA ] [-] EMBL BX610390 [ TGTGTGTG GTCTGCGACGAACGATAAAATCAAAGCCAAGACGGGGGCAGTGTGGATAGTCGTTTGCCACACTCGAGTTCTGGTAGAAGTGTTAGGAGTAAGTTACTTAAGCATAAGTTAATAAATTGATCGATTTACCGATCTCTCTTCCAGAAACTAGTTAAGATTTTGCGTTCGTCTCGTTCACCCCTTTCCACTACATTTCCTTTGGCAGTTCCTTGTTCCTACAACCTGGACCATTTCGGTTAAGAATTTCGTGATTGGGACTACAAAAAATGCAGAAAATATGAATGTATGAATAATAACGGAATGGTGTATAAAGAAAAGTGTAACGAAAGATGTAACATAACGGATGAATGGAGCTTTCTGTAACAAATCCTTTGGCTAGTAACCAAAAAACAGTTTGTTGGATGAAAAGAACGATGAGAAACGATGAAACCTTCCGGCGATCCAGAGCTTTCGTTTACCACCGGAAGGAACTGGCTACAATCACAGGTAAGTGCAGCGAGTGGCAGCCGC CTCTCTCCATACACACCACCCACCGTACCCGCACTGCTTCCTCACACTCCCCGCACTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCCTGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCACCAGTCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGC ] [-] EMBL CNS09IZP [ CGATTTACCGATCTCTCTTCCAGAAACTAGTTAAGATTTTGCGTTCGTCTCGTTCACCCCTTTCCACTACATTTCCTTCGGCAGTTCCTTGTTCCTACAGCCTGAACCATTTCGGTTAAGAATTTCGTGATTGGGACTACAAAAAATGGAGAAAATATGAATGTATGAATAATAACGGAATGGTGTATAAAGAAAAGTTTAACGAAAGATGTAACATAACGGATGAATGGAGCTTTCTGTAACAAATCCTTTGGCTAGTAACCAAAAAACAGTTTGTTGGATGAAAAGAAATATGAGAAACGATGAAACCTTCCGGCGATCCAGAGCTTTCGTTTACCACCGGAAGGAACTGACTACAATCACAGGTAAGTGCAGCGTGTGGCAGCCGC CTCTCTCTCTCTCTCCATACACACCACCCACCGTACCTGCACTGCTTCCTCACACTCCCCGCACTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCAT CTGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCACCAGCCCCAGGCGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCACGCCGGCCGCTTCCCGTCCACCGGCAAACTTGACCCGTATCGTCTTCTCCAGATATTTGCTCAGATCGAGGATGGATTCCTTTCGTCGCTTTTCTTTATTGTCGCCTCCGCCGCCG CCGCCACCACTTCCTCCACCACCAGTCGAATTGCCGGATGCCGCTGGCTTCTTATCCGACATGATGCCGATCGAATGTAAAATACACCAGAACTTCTATCAGCGCTGAAACTGCAACGATTCGAAGGGGTTTGTTTA ] [-] EMBL BX604865 [ GTATAAAGAAAAGTTTAACGAAAGATGTAACATAACGGATGAATGGAGCTTTCTGTAACAAATCCTTTGGCTAGTAACCAAAAAACAGTTTGTTGGATGAAAAGAACGATGAGAAACGATGAAACCTTCCGGCGATCCAGAGCTTTCGTTTACCACCGGAAGGAACTGGCTACAATCACAGGTAAGTGCAGCGTGTGGCAGCCGC CTCTCTCCATACACACCACCCACCGTACCTGCACTGCTTCCTCAAACTCCCCGCACTAGCGTTTATGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCATGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCACCAGTCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCACGCCGGCCGCTTCCCGTCCACCGGCAAACTTGAC ] [-] EMBL BX606655 [ TTTACCACCGGAAGGAACTGGCTACAATCACAGGTAAGTGCAGCGAGTGGCAGCCGC CTCTCTCCATACACACCACCCACCGTACCCGCACTGCTTCCTCACACTCCCCGCACTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCCTGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCACCAGTCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCACGCCGGCCGCTTCCCGTCCACCGGCAAACTTGACCCGTATCGTCTTCTCCAGATATTTGCTCAGATCGAGGATGGATTCCTTTCGTCGCTTTTCTTTATTGTCGCCTCCGCCGCCGCCACCACCACCACTTCCACCACCACCAGTCGAATTGCCGGATGCCGCTGGCTTCTTATCCGACATGATGCCAATCGAATGTAAAATACACCAGAACTTCTATCAGCGCTGAAACTGCAACGATTCGAAGGGGTTTGTTTACAACAGGCG] [-] EMBL BX603087 [ CAGCGTGTGGCAGCCGCCTCACTCTCTCTCTCTCTCTCCATACACACCACCCACCGTACCTGCACTGCTTCCTCAAACTGCCCGCACTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCCTGCGGACAGATCAACACCACCGACGTGCCCCGGCACACCACCAGCCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCACGCCGGCCGCTTCCCGTCCACCGGCAAACTTGACCCGTATCGTCTTCTCCAGATATTTGCTCAGATCGAGGATGGATTCCTTTCGTCGCTTTTCTTTATTGTCG ] [-] EMBL AGA282443 [ TCCCCGCANTAGCCTTCCTGGGCGATGAAGGGGTTCTGTATCGATTCCATGCCATCCTGCGGGCAGATCAACACCACCGACGTGCCCCGGCACACCACCAGTCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCGCAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCACGCCGGCCGCTTCCCGTCCACCGGCAAACTTGACCCGTATCGTCTTCTCCAGATATTTGCTCAGATCGAGGATGGATTCCTTTCGTCGCTTTTCTTTATTGTCGCCTCCGCCGCCGCCACCACCACCACTTCCACCACCACCAGTCGAATTGCCGGATGCCGCTGGCTTCTTATCCGACATGATGCCAATCGAATGTAAAATACACCAGAAC ] consensusID : consensus_7722#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 386 fasta sequence [TTTTTTGTGTTTCGAGTAGGTTGGAATTTATTTACACGAAGAATCAACTCAACACCGATTAGAAGTTAAGTAGGCGAGCTTGGTTGGGGCAACGTCGATCCACAATTGCACCACAACACGTGGCGGAGGAGTTCGAACGTTCCACCATTTTTGTTTTATATGTACTTTGTTGTTCTGTTGTGTTGTGGCTTAAATGCTTCCTCTGTGCTATTTTTGTTTGAGTTATAATTTTATTGTTAGAGGTTTGGCCCGTGACCGCGGGAAAAAGGCACCACCGTGGGAGTGTGTGTGTGTGTGTGTCTGCGACGAACGATAAAATCAAAGCCCAGACGGGGGCAGTGTGGATAGTCGTTTGCCACACTCGAGTTCTGGTAAAAGTGTTAGGA] [+] EMBL AGA280817 [TTTTTTGTGTTTCGAGTAGGTTGGAATTTATTTACACGAAGAATCAACTCAACACCGATTAGAAGTTAAGTAGGCGAGCTTGGTTGGGGCAACGTCGATCCACAATTGCACCACAACACGTGGCGGAGGAGTTCGAACGTTCCACCATTTTTGTTTTATATGTACTTTGTTGTTCTGTTGTGTTGTGGCTTAAATGCTTCCTCTGTGCTATTTTTGTTTGAGTTATAATTTTATTGTTAGAGGTTTGGCCCGTGACCGCGGGAAAAAGGCACCACCGTGGGAGTGTGTGTGTGTGTGTGTCTGCGACGAACGATAAAATCAAAGCCCAGACGGGGGCAGTGTGGATAGTCGTTTGCCACACTCGAGTTCTGGTAAAAGTGTTAGGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7722#0 ----------------------------------------------ACTCAACACCGATC 14 consensus_7722#1 TTTTTTGTGTTTCGAGTAGGTTGGAATTTATTTACACGAAGAATCAACTCAACACCGATT 60 ************* consensus_7722#0 GGAAGTTAAGTAGGCGAGCTTGGTTGGGGCAGCGTCGATCCACAATAGCACCACAACACG 74 consensus_7722#1 AGAAGTTAAGTAGGCGAGCTTGGTTGGGGCAACGTCGATCCACAATTGCACCACAACACG 120 ****************************** ************** ************* consensus_7722#0 TGGCGGAGGAGTTCGAACGTTCCACCAGTTTTTGTTTTATATGTACTTTGTTGTTCTGTT 134 consensus_7722#1 TGGCGGAGGAGTTCGAACGTTCCACCA-TTTTTGTTTTATATGTACTTTGTTGTTCTGTT 179 *************************** ******************************** consensus_7722#0 GTGTTGTGGCTTAAATGCTTCCTCTGTGCTATTTTTGTTTGAGTTATAATTTTAACAACT 194 consensus_7722#1 GTGTTGTGGCTTAAATGCTTCCTCTGTGCTATTTTTGTTTGAGTTATAATTTTA------ 233 ****************************************************** consensus_7722#0 ATTGTTAGAGGTTTAGTCCGTAATCGTGGGAAAACGGCACCACCGTGGGAGTGTGTGTGT 254 consensus_7722#1 -TTGTTAGAGGTTTGGCCCGTGACCGCGGGAAAAAGGCACCACCGTGGGAGTGTGTGTGT 292 ************* * **** * ** ******* ************************* consensus_7722#0 GT------CTGCGACGAACGATAAAATCAAAGCCCAGATGGGGGCAGTGGGGAAAGTCGT 308 consensus_7722#1 GTGTGTGTCTGCGACGAACGATAAAATCAAAGCCCAGACGGGGGCAGTGTGGATAGTCGT 352 ** ****************************** ********** *** ****** consensus_7722#0 TTTCCACACTCGAGTTCTGGTAGAAGTGTTAGGAGTAAGTTACTTAAGCATAAGTTAATA 368 consensus_7722#1 TTGCCACACTCGAGTTCTGGTAAAAGTGTTAGGA-------------------------- 386 ** ******************* *********** consensus_7722#0 AATTGATCGATTTACCGATCTCTCTTCCAGAAACTAGTTAAGATTTTGCGTTCGTCTCGT 428 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 TCACCCCTTTCCACTACATTTCCTTCGGCAGTTCCTTGTTCCTACAGCCTGAACCATTTC 488 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GGTTAAGAATTTCGTGATTGGGACTACAAAAAATGGAGAAAATATGAATGTATGAATAAT 548 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 AACGGAATGGTGTATAAAGAAAAGTTTAACGAAAGATGTAACATAACGGATGAATGGAGC 608 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 TTTCTGTAACAAATCCTTTGGCTAGTAACCAAAAAACAGTTTGTTGGATGAAAAGAAATA 668 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 TGAGAAACGATGAAACCTTCCGGCGATCCAGAGCTTTCGTTTACCACCGGAAGGAACTGG 728 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 CTACAATCACAGGTAAGTGCAGCGTGTGGCAGCCGCCTCTCTCTCTCTCTCCATACACAC 788 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 CACCCACCGTACCTGCACTGCTTCCTCACACTCCCCGCACTAGCCTTCCTGGGCGATGAA 848 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GGGGTTCTGTATCGATTCCATGCCATCCTGCGGGCAGATCAACACCACCGACGTGCCCCG 908 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GCACACCACCAGTCCCAGGTGCCGCGTATCGTCCGCCAGCTTGTAATCGTCCGGATCGCG 968 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 CAAAAACTCTATCGTATTGTCCAGCACCAGGTTCAGCAGCGGATCGTAACCCTTCAGCAC 1028 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GCCGGCCGCTTCCCGTCCACCGGCAAACTTGACCCGTATCGTCTTCTCCAGATATTTGCT 1088 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 CAGATCGAGGATGGATTCCTTTCGTCGCTTTTCTTTATTGTCGCCTCCGCCGCCGCCACC 1148 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 ACCACTTCCACCACCACCAGTCGAATTGCCGGATGCCGCTGGCTTCTTATCCGACATGAT 1208 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GCCAATCGAATGTAAAATACACCAGAACTTCTATCAGCGCTGAAACTGCAACGATTCGAA 1268 consensus_7722#1 ------------------------------------------------------------ consensus_7722#0 GGGGTTTGTTTACAACAGGCG 1289 consensus_7722#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||