These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7723#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 740 fasta sequence [CCGCCCACGCGGGAGCGCAACCAGTTCGCAGCGTGCTAACGATGATTCGAACGTGCAAGGTGATGCGATTTTGTGCACAAACTAGTGTCCGTGTACCGTGCTATCGACAGTTTGGTGTGGTGAGTTGTGTGCAGCAGAAACTTGCTTCCTCCCTTTGCGCACCGCGTGGCACGCGCGTGAGTGAAATAGTGCCGGAAGCATCGTCCACTACGCCCGGCGACCCGGCGGGAAAGAAACAATCCGCCGTACCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACAATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGTCCAAGCTGCGGCCGGACCGTAAATCGGCAGA--CGCG-TCGCGGGAAGCAGCGAAACCGCCAGCCCCGCCCGTGCACA-GGAAAACTGCAATCGAGAAAGACACACTCCAGATACTGCAGCACCGCTACCA-GGATCCG-AACGAGTCGG-AGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACAATACTA-CA-GTCGAACGATGCCCGGTACC-GGGATTTGATGATGCTGATTGGAT-CGCG-CAAAAACC--GGG-AGCGCCAAACGGGA-TGC-TGG-TGC-TGG-AGGG--CCGGC-GGTTGATATTGGAATGGGCTACCAAGGCCCGGGTTTTTACGGGCTGGGAATCGCTGATTGGTTACCAATCGGATGGTGGAAACTTGCCTGGGCGGCGAA] [+] EMBL BM610470 [CCGCCCACGCGTCCGCGCAAGCAGTTCGCAGCGTGCTAACGATGATTCGAACGTGGAAGGTGATGCGATTTTGTGCACAAACTAGTGTCCGTGTACCGTGCTATCGACAGTTTGGTGTGGTGAGTTGTGTGCAGCAGAAACTTGCTTCCTCCCTTTGCGCACCGCGTGGCACGCGCGTGAGTGAAATAGTGCCGGAAGCATCGTCCACTACGCCCGGCGACCCGGCGGGAAAGAAACAATCCGCCGTACCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACAATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGTCCAAGCTGCGGCCGGACCGTAAATCGGCAGA CGCG TCGCGGGAAGCAGCGAAACCGCCAGCCCCGCCCGTGCACA GGAAAACTGCAATCGAGAAAGACACACTCCAGATACTGCAGCACCGCTACCA GGATCCG AACGAGTCGG AGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACAATACTA CA GTCGAACGATGCCCGGTACC GGGATTTGATGATGCTGATTGGAT ] [+] EMBL BM657706 [ GGGAGCGCAACCAGTTCGCAGCGTGCTAACGATGATTCGAACGTGCAAGGTGATGCGATTTTGTGCACAAACTAGTGTCCGTGTACCGTTTTATCGACAGTTTGGTGTGGTGAGTTGTGTGCAGCAGAAACTTGCTTCCTCCCTTTGCGCACCGCGTGGCACGCGCGTGAGTGAAATAGTGCCGGAAGCATCGTCCGCTACGCCCGGCGACCCGGCGGGAAAGAAACAATCCGCCGTACCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACAATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGTCCAAGCTGCGGCCGGACCGTAAATCGGCAGA CGCG TCGCGGGAAGCAGCGAAACCGCCAGCCCCGCCCGTGCACAGGGAAAACTGCAATCGAGAAAGACACACTCCAGATACTGCAGCACCGCTACCAGGGATCCGAAACGAGTCGGAAGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACCCAATACTACCAGGTCGAACGATGCCCGGTACCGGGGATTTGATGATGCTGATTGGATCCCCGCCAAAAACCCGGGGAAGCGCCAAACGGGATTGCTTGGTTGCTTGGAAGGGCCCCGGCGGGTTGATATTGGAATGGGCTACCAAGGCCCGGGTTTTTACGGGCTGGGAATCGCTGATTGGTTACCAATCGGATGGTGGAAACTTGCCTGGGCGGCGAA] [+] EMBL BM601868 [ ccGAGCGCAACCAGTTCGCAGCGTGCTAACGATGATTCGAACGTGCAAGGTGATGCGATTTTGTGCACAAACTAGTGTCCGTGTACCGTTTTATCGACAGTTTGGTGTGGTGAGTTGTGTGCAGCAGAAACTTGCTTCCTCCCTTTGCGCACCGCGTGGCACGCGCGTGAGTGAAATAGTGCCGGAAGCATCGTCCGCTACGCCCGGCGACCCGGCGGGAAAGAAACAATCCGCCGTACCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACAATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGTCCAAGCTGCGGCCGGACCGTAAATCGG AGAACCCCGTTCGCGGGAAGCAGCGAAACCGCCAGCCCCGCCCGTGCACA GGAAAACTGCAATCGAGAAAGACACACTCCAGATACTGCAGCACCGCTACCA GGATCCG AACGAGTCGG AGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACTATACTA CA GTCGAACGATGCCCGGTACC GGGATTTGATGATGCTGATTGGAT CGCG CAAAAACC GGG AGCG CGAGC GGA TGC TGG TGC TGG AGGG CCGGC GGTTGAT ] [+] EMBL BX603543 [ AGTGTCCGTGTACCGTGCTATCGACAGTTTGGTGTGGTGAGTTGTGTGCAGCAGAAACTTGCTTCCTCCCTTTGCGCACCGCGTGGCACGCGCGTGAGTGAAATAGTGCCGGAAGCATCGTCCACTACGCCCGGCGACCCGGCGGGAAAGAAACAATCCGCCGTACCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACAATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGTCCAAGCTGCGGCCGGACCGTAAATCGGCAGA CGCG TCGCGGGAAGCAGCGAAACCGCCAGCCCCGCCCGTGCACA GGAAAACTGCAATCGAGAAA ] [+] EMBL CNS08ZM1 [ GCGCGTGAGTGAAATAGTGCCGGAAGCATCGTCCACTACGCCCGGCGACCCGGCGGGAAAGAAACAATCCGCCGTAGCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACAATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGCCCAAGCTGCGGCCGGACCGTAAATCCCCAGA CGCG TCG GGGAAGCAGCGAAACCGCCAGCCCCGCCCGTGCACA GGAAAACTGCAATCGAGAAAGACACACTCCAGATACTGCAGCACCGCTACCA GGATCCG AACGAGTCGG AGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACAATACTA CA GTCGAACGATGCCCGGTACC GGGATTTGATGATGCTGATTGGAT CGCG CAAAAACC GGG AGCGC GAGGGCA TGC TGG TGC TGG AGGG CCGGC GGTTGATAATGG AT GGCTACC AGGCC GGTTTac ] consensusID : consensus_7723#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 595 fasta sequence [AGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACAATACTACAGTCGAACGATGCCCGGTACCGGGATTTGATGATGCTGATTGGATCGCGCAAAAACCGGGAGCGCGAGCGGATGCTGGTACTGGAGGGCCGGCGGTTGATAATGGATGGCTACCAGGCCGGCTTACGGCTGGAAGCAATTGTGACGAGTGATGTGAAGCTGCTGGCGGATCTAACTTTCAGGGCAAAGCTGAAAGCCTGCCCCATTTTTCTCGTTAAACGGCAAACCATGATGGAGTGGTCATCGTTAACAACGAGCCCGGGCTTGATAGGGATCTTCGGCGAACCGTCTAATATGAGCGAGCTAGTTACCCGGAACGCGACCGGCAGCAAACGGCTTCCGGTGACGGTGGTTTGTGACAACATCCGCGAGCCGAACAATTTGGGCAGCATTGTGCGGAGCTGCGCCGCGG-TATCCGTACGGGAAGTAATTCTGCTGAAAGGTTGCGCCCCATCCGTGGGATCTGAAGTGCCTGCGGGGCGGGGCCGGCGCACACTTCCGCGTGCCGATTTACGGTCCGATCGAAGCGTACCAGCTGCCCGAGCACGTGC] [+] EMBL BX610519 [AGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACAATACTACAGTCGAACGATGCCCGGTACCGGGATTTGATGATGCTGATTGGATCGCGCAAAAACCGGGAGCGCGAGCGGATGCTGGTACTGGAGGGCCGGCGGTTGATAATGGATGGCTACCAGGCCGGCTTACGGCTGGAAGCAATTGTGACGAGTGATGTGAAGCTGCTGGCGGATCTAACTTTCAGGGCAAAGCTGAAAGCCTGCCCCATTTTTCTCGTTAAACGGCAAACCATGATGGAGTGGTCATCGTTAACAACGAGCCCGGGCTTGATAGGGATCTTCGGCGAACCGTCTAATATGAGCGAGCTAGTTACCCGGAACGCGACCGGCAGCAAACGGCTTCCGGTGACGGTGGTTTGTGACAACATCCGCGAGCCGAACAATTTGGGCAGCATTGTGCGGAGCTGCGCCGCGG TATCCGTACGGGAAGTAATTCTGCTGAAAGGTTGCGCCCCATCCGTGGGATCTGAAGTGCCTGCGGGGCGGGGCCGGCGCACACTTCCGCGTGCCGATTTACGGTCCGATCGAAGCGTACCAGCTGCCCGAGCACGTGC] [+] EMBL BX610518 [ ACGACAAGGAGTTGAAACTGCGCTACACAATACTACAGTCGAACGATGCCCGGTACCGGGATTTGATGATGCTGATTGGATCGCGCAAAAACCGGGAGCGCGAGCGGATGCTGGTACTGGAGGGCCGGCGGTTGATAATGGATGGCTACCAGGCCGGCTTACGGCTGGAAGCAATTGTGACGAGTGATGTGAAGCTGCTGGCGGATCTAACTTTCAGGGCAAAGCTGAAAGCCTGCCCCATTTTTCTCGTTAAACGGCAAACCATGATGGAGTGGTCATCGTTAACAACGAGCCCGGGCTTGATAGGGATCTTCGGCGAACCGTCTAATATGAGCGAGCTAGTTACCCGGAACGCGACCGGCAGCAAACGGCTTCCGGTGACGGTGGTTTGTGACAACATCCGCGAGCCGAACAATTTGGGCAGCATTGTGCGGAGCTGCGCCGCGGTTATCCGTACCGGAAGTAATTC ] [+] EMBL BX610520 [ ATAGGATCGCGCAAAAACCGGGAGCGCGAGCGGATGCTGGTACTGGAGGGCCGGCGGTTGATAAAGGAGGGCAACCAGGCCGGCTCACGGCTGGAAGCAATTGTGACGAGTGAAGTGAAGCTGCTG ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7723#0 CCGCCCACGCGGGAGCGCAACCAGTTCGCAGCGTGCTAACGATGATTCGAACGTGCAAGG 60 consensus_7723#1 --------------------------AGGAGCGGTACGACAAGGAGTTGAAACTGC---G 31 * **** ** * ** * *** *** * consensus_7723#0 TGATGCGATTTTGTGCACAAACTAGTGTCCGTGTACCGTGCTATCGACAGTTTGGTGTGG 120 consensus_7723#1 CTACACAATACTACAGTCGAAC-GATGCCCG-GTACCGGG---------ATTTGATGATG 80 * * ** * * *** ** *** ****** * **** ** * consensus_7723#0 TGAGTTGTGTGCAGCAGAAACTTGCTTCCTCCCTTTGCGCACCGCGTGGCACGCGCGTGA 180 consensus_7723#1 CTGATTGGATCGCGCAAAAACCGG------------GAGCGCGAGCGGATGCTGGTACTG 128 *** * *** **** * * ** * * * * consensus_7723#0 GTGAAATAGTGCCGGAAGCATCGTCCACTACGCCCGGCGACCCGGCGGGAAAGAAACAAT 240 consensus_7723#1 GAGGGCCGGCGGTTGATA-ATGGATGGCTAC--CAGGCCGGCTTACGGCTGGAAGCAATT 185 * * * * ** ** * **** * *** * *** * * * consensus_7723#0 CCGCCGTACCGAGTGAACACACCGACGACGGCTGGGGTGCTGAAGATGAGCTGCTAAACA 300 consensus_7723#1 GTGACGAGTGATGTGAA---GCTGCTGGCGGATCTAACTTTCAGGGCAAA--GCTGAAAG 240 * ** ***** * * * *** * * * * * *** ** consensus_7723#0 ATCGCAAAAGTATTCCCAACCTAAAGGTTTCGGAGCTGCTGAAAGATGTGCCACGGTCCA 360 consensus_7723#1 CCTGCCCCATTTTTCTCG--TTAAACG----GCAAACCATGATGGAGTGGTCATCGTTAA 294 ** * * *** * **** * * * *** ** * ** ** * consensus_7723#0 AGCTGCGGCCGGACCGTAAATCGGCAGACGCGTCGCGGGAAGCAGCGAAACCGCCAGCCC 420 consensus_7723#1 CAACGAGCCCGGGC------TTGATAGGGATCTTCGGCGAACCGTCTAATATG---AGCG 345 * * **** * * * ** * * *** * * ** * * consensus_7723#0 CGCCCGTGCACAGGAAAACTGCAATCGAGAAAGACACACTCCAGATACTGCAGCACCGCT 480 consensus_7723#1 AGCTAGTTACCCGGAA---CGCGACCGGCAGCAAACGGCTTCCGGTGACGGTGGTTTG-T 401 ** ** * **** ** * ** * * ** * * * * * * * consensus_7723#0 ACCAGGATCCGAACGAGTCGGAGGAGCGGTACGACAAGGAGTTGAAACTGCGCTACACAA 540 consensus_7723#1 GACAACATCCG--CGAGCCGAACAATTTGGGCAGCATTGTGC-GGAGCTGCGCCGC---- 454 ** ***** **** ** * * * * ** * * * * ****** * consensus_7723#0 TACTACAGTCGAACGATGCCCGGTACCGGGATTTGATGATGCTGATTGGATCGCGCAAAA 600 consensus_7723#1 --------------GGTATCCG-TAC-GGGAAGTAATTCTGCTGAA-AGGTTGCGCCCCA 497 * * *** *** **** * ** ****** * * **** * consensus_7723#0 ACCGGGAGCGCCAAACGGGATGCTGGTGCTGGAGGGCCGGCGGTTGATATTGGAATGGGC 660 consensus_7723#1 TCCGTGGGATCTGAA----GTGCCTGCGGGGCGGGGCCGGCG-------------CACAC 540 *** * * * ** *** * * * ********* * consensus_7723#0 TACCAAGGCCCGGGTTTTTACGGGCTGGGAATCGCTGATTGGTTACC-AATCGGATGGTG 719 consensus_7723#1 TTCCGCGTGCCGA---TTTACGGTCCGATCGAAGCGTACCAGCTGCCCGAGCACGTGC-- 595 * ** * *** ******* * * ** * * * ** * * ** consensus_7723#0 GAAACTTGCCTGGGCGGCGAA 740 consensus_7723#1 --------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||