These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7724#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1267 fasta sequence [TTTTTAGTGTTGTGATAGTGATGTTTGTTAAATGTATGCTCAGTATAATAATGCTAGTGTATAATAGAAGGGGGTGTGGTTGGTTGTTGTTAAGACGATGAATCACTTTCGATCTCTCGCGTATCGTCATCATCATCGTCTTCCTGCTTCATTATAGTATCGATGTAAAAACACTCTATGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTAC-GGTTTAAGGCCGGTGTGCAACATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTGTATGGCTTGAGACCAGTATGTAACATTTGATGTTTAATCATGTTGGCGTGTTGCG-TAAATGCCTTTTCGCAAACGGGACACTTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCATGCTGCGAGAACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGCTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGCCAGTTGGGTGAAGCCTTTGTTACAAATCTGACAAACGAAAGGACGTTCGCCCGTGTGTGCCTTGGTGTACTTCCACATGGAACTATGGCTGGGAAATTCTTTGCTGCATATTTCGCACTTAAACTTGTTCTCCGTCAAATGCTTTGTCCGGTGCTGTTCCATTTCCTCCATCGTATCGAAACGCTTCCGGCACTGTGGACACTTGATTTTGTTGAGATTGATAAGCGTATTGCCCAGGGATAGCGACACGACAAAATGCTTATTGTCAACCAGATGATCCTGCTGGAGCATTTCCGACCGTGTTAGCTCTATCACACCATCATCGAATTGGGTTTGCAGCGGGTAGAACATGGTTTTGGCCTGCTGCAGCGGCTGCTGCTCCGGTGACTGCTCCGGGTTGGTGGCCGCTGCTCAAGGACACGCACGGAAAAGGGGGGGATGAGATGAAGATATATCACAGCTGCTGCTAAGTTGGCCACACACACTGGAGAGAGCACACGGCCCTGCTGCTGCTGCTGGAGCACGTTCGATCGGGAAGGCGACGCACCACACAACCGCGCTCCA-GCGTACACGCGACACAAGAGAGCGCTGCTGATCCGGAAGCCGCTGCTGCTGCTGCTGTGTCG] [+] EMBL CNS08L1S [TTTTTAGTGTTGTGATAGTGATGTTTGTTAAATGTATGCTCAGTATAATAATGCTAGTGTATAATAGAAGGGGGTGTGGTTGGTTGTTGTTAAGACGATGAATCACTTTCGATCTCTCGCGTATCGTCATCATCATCGTCTTCCTGCTTCATTATAGTATCGATGTAAAAACACTCTATGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTAC GGTTTAAGGCCGGTGTGCAACATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTGTATGGCTTGAGACCAGTATGTAACATTTGATGTTTAATCATGTTGGCGTGTTGCG TAAATGCCTTTTCGCAAACGGGACACTTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCATGCTGCGAGAACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGCTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGCCAGTTGGGTGAAGCCTTTGTTACAAATCTGACAAACGAAAGGACGTTCGCCCGTTTGTTCCTTGGTGTACTTCCACATGGAACTATGGCTGGGAAATTCTTTGCTGCATATTTCGCACTTAAACTTGTTCTCCGTCAAATGCTTTGTCCGGTGCTGTTCCATTTCCTCCATCGTATCGAAACGCTTCCGGCACTGTGGACACTTGATTTTGTTGAGATTGAAAAGCGTATTGCCCAGGGATAGCGACACGACAAAATGCTTATTGTCAACCAGATGATCCTGCTGGAGCATTTCCGACCGTGTTA ] [+] EMBL CNS08X6P [ TGTT AATGTATGCTCAGTATAATAATGCTAGTGTATAATAGAAGGGGGTGTGGTTGGTTGTTGTTAAGACGATGAATCACTTTCGATCTCTCGCGTATCGTCATCATCATCGTCTTCCTGCTTCATTATAGTATCGATGTAAAAACACTCTATGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTAC GGTTTAAGGCCGGTGTGCAACATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTGTATGGCTTGAGACCAGTATGTAACATTTGATGTTTAATCATGTTGGCGTGTTGGT TAAATGCCTTTTCGCAAACGGGACACTTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCATGCTGGGAGAAGGGTTTGTGGGAGAGGGGAGATTTGTAGGGGTTAATTTGGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGGTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGGCAGTGGGGTGAAGCCTTTGTTACAAATCTGACAAACGAAAGGA ] [+] EMBL CNS08VPR [ ATGTATGCTCAGTATAATAATGCTAGTGTATAATAGAAGGGGGTGTGGTTGGTTGTTGTTAAGACGATGAATCACTTTCGATCTCTCGCGTATCGTCATCATCATCGTCTTCCTGCTTCATTATAGTATCGATGTAAAAACACTCTATGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTACGGGTTTAAGGCCGGTGTGCAACATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTGTATGGCTTGAGACCAGTATGTAACACTTGATGTTTAATCATGTTGGCGTGTTGCGATAAATGCCTTTTCGCAAACGGGACAATTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCATGCTGCGAGAACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGCTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGCCAGTGGGGTGAAGCCTTTGTTACAAATCTGACAAACGAAAGGACGTTCGCCCGTGTGTCCCTTGGTGTGCTTACACATGGAACTATGGCTGG ] [-] EMBL CNS08L1R [ GGACATTTTTATGGCTTGAGACCAGTATGTAACATTTGATGTTTAATCATGTTGGCGTGTTGCG TAAATGCCTTTTCGCAAACGGGACACTTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCATGCTGCGAGAACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGCTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGCCAGTTGGGTGAAGCCTTTGTTACAAATCTGACAAACGAAAGGACGTTCGCCCGTGTGTGCCTTGGTGTACTTCCACATGGAACTATGGCTGGGAAATTCTTTGCTGCATATTTCGCACTTAAACTTGTTCTCCGTCAAATGCTTTGTCCGGTGCTGTTCCATTTCCTCCATCGTATCGAAACGCTTCCGGCACTGTGGACACTTGATTTTGTTGAGATTGATAAGCGTATTGCCCAGGGATAGCGACACGACAAAATGCTTATTGTCAACCAGATGATCCTGCTGGAGCATTTCCGACCGTGTTAGCTCTATCACACCATCATCGAATTGGGTTTGCAGCGGGTAGAACATGGTTTTGGCCTGCTGCAGCGGCTGCTGCTCCGGTGACTGCTCCAGGTTGGTGGCCGCTGCTCAAGGACACGCACGGAAAAGGGGGGGATGAGATGAAGATATATCACAGCTGCTGCTAAGTTGGCCACACACACTGGAGAGAGCACACGGCCCTGCTGCTGCTGCTGGAGCACGTTCGATCGGGAAGGCGACGCACCACACAAGCGCGCTCCA GCGTA ] [-] EMBL CNS09QCE [ GACACTTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCATGCTGCGAGAACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGCT ] [-] EMBL CNS08VPQ [ ACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGAAGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTGAACGGCTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGCCAGTTGGGTGAAGCCTTTGTTACAAATCTGACAAACGAAAGGACGTTCGCCCGTGTGTGCCTTGGTGTGCTTCCACATGGAACTATGGCTGGGAAATTCTTTGCTGCATATTTCGCACTTAAACTTGTTCTCCGTCAAATGCTTTGTCCGGTGCTGTTCCATTTCCTCCATCGTATCGAAACGCTTCCGGCACTGTGGACACTTGATTTTGTTGAGATTGATAAGCGTATTGCCCAGGGATAGCGACACGACAAAATGCTTATTGTCAACCAGATGATCCTGCTGGAGCATTTCCGACCGTGTTAGCTCTATCACACCATCATCGAATTGGGTTTGCAGCGGGTAGAACATGGTTTTGGCCTGCTGCAGCGGCTGCTGCTCCGGTGACTGCTCCGGGTTGGTGGCCGCTGCTCAAGGACACGCACGGAAAAGGGGGGGATGAGATGAAGATATATCACAGCTGCTGCTAAGTTGGCCACACACACTGGAGAGAGCACACGGCCCTGCTGCTGCTGCTGGAGCACGTTCGATCGGGAAGGCGACGCACCACACAACCGCGCTCCACGCGTACACGCGACACAAGAGAGCGCTGCTGATCCGGAAGCCGCTGCTGCTGCTGCTGTGTCG] [-] EMBL CNS08X6O [ ATTTGGTGCATGGTATCGAAACGCTTCCGGCACTGTGGACACTTGATTTTGTTGAGATTGATAAGCGTATTGCCCAGGGATAGCGACACGACAAAATGCTAATTGTCAACCAGATGATCCTGCTGGAGCATTTCCGACCGTGTTAGCTCTATCACACCATCATCGAATTGGGTTTGCAGCGGGTAGAACATGGTTTTGGCCTGCTGCAGCGGCTGCTGCTCCGGTGACTGCTCCGGGTTGGTGGCCGCTGCTCAAGGACACGCACGGAAAAGGGGGGGATGAGATGAAGATATATCACAGCTGCTGCTAAGTTGGCCACACACACTGGAGAGAGCACACGGCCCTGCTGCTGCTGCTGGAGCACGTTCGATCGGGAAGGCGACGCACCACACAACCCCGCTCCA GCGTACACGCGACACAAGAGAGCGCTGCTGATCCGGAAGCCGCTGCTGC ] consensusID : consensus_7724#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 631 fasta sequence [GTGGCGGTTAGTAGTCTTATAGTGGTTATCCGGTTTTTAGACGGCAACCATAATCTACAAGCAANTCCCTATGTCGCAAGCGGAACGGTTAGGTTAGGCGGTTTGAATTTATGCGCCAAAGTTACAAANTTGGGTTTGACTAAAGTAAAACCCCTTATGTAATATCCTCTGCCATACGTCGAATTTAANTAATTGTTTAGGTTGNGTTTCGTGGATCCCAAGTGGATGTGCTCTTGTTAAAATGTTATGCCTCAGTATAATAATGCTACGTGTTAGTAATAGAAGGGGGGTTNTGGTTGTTGCTGTTAAGACGATGAATCACTTTCGATCGTCTCGCGTATCGTCATCAATCATCGTCTTCCCGCCTTCATTATAGTATCGATGTAAAACACTCTATGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTACGGTTTAAGGCCGGTGTGCAACATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTGTATGGCTTGAGACCAGTATGTAACATTTGATGTTAATCATGTTGGCGTGTACCTCGGGGCNATTCTGCTGA] [-] EMBL AL931120 [GTGGCGGTTAGTAGTCTTATAGTGGTTATCCGGTTTTTAGACGGCAACCATAATCTACAAGCAANTCCCTATGTCGCAAGCGGAACGGTTAGGTTAGGCGGTTTGAATTTATGCGCCAAAGTTACAAANTTGGGTTTGACTAAAGTAAAACCCCTTATGTAATATCCTCTGCCATACGTCGAATTTAANTAATTGTTTAGGTTGNGTTTCGTGGATCCCAAGTGGATGTGCTCTTGTTAAAATGTTATGCCTCAGTATAATAATGCTACGTGTTAGTAATAGAAGGGGGGTTNTGGTTGTTGCTGTTAAGACGATGAATCACTTTCGATCGTCTCGCGTATCGTCATCAATCATCGTCTTCCCGCCTTCATTATAGTATCGATGTAAAACACTCTATGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTACGGTTTAAGGCCGGTGTGCAACATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTGTATGGCTTGAGACCAGTATGTAACATTTGATGTTAATCATGTTGGCGTGTACCTCGGGGCNATTCTGCTGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7724#0 TTTTTAGTGTTGTGATAGTGATGTTTGTTAAATGTATGCTCAGTATAATAATGCTAGTGT 60 consensus_7724#1 --------GTGGCGGT--TAGTAGTCTTATAGTGGTTATCCGGTTTTTAGACGGCAAC-C 49 ** * * * * * * * * ** * * ** * * * * consensus_7724#0 ATAATAGAAGGGGGTGTGGTTGGTTGTTGTTAAGACGATGAATCACTTTCGATCTCTCGC 120 consensus_7724#1 ATAATCTACAAGCAANTCCCTA--TGTCGC-AAGCGGAACGGTTAGGTTAGGCGGTTTGA 106 ***** * * * * *** * *** ** * * ** * * * consensus_7724#0 GTATCGTCATCATCATCGTCTTCCTG--CTTCATTATAGTATCGATGTAAAAACACTCTA 178 consensus_7724#1 ATTTATGCGCCAAAGTTACAAANTTGGGTTTGACTAAAGT---------AAAACCCCTTA 157 * * * ** * ** ** * ** *** ***** * ** consensus_7724#0 TGGAATTACCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCCTGCTGGGCGAACGCCT 238 consensus_7724#1 TGTAATATCC--TCTGCCATACGTCGAATTTAANTA-ATTGTTTAGGTTGNGTTTCGTGG 214 ** *** ** * ** * *** *** * * *** * * * ** consensus_7724#0 TGCCACAGGTGGAACATTTGTACGGTTTAAGGCCGGTGTGCAACATT-TGATGTTTCACC 297 consensus_7724#1 -ATCCCAAGTGGA---TGTGCTCTTGTTAAAAT-GTTATGCCTCAGTATAATAATGCTAC 269 * ** ***** * ** * **** * * *** ** * * ** * * * consensus_7724#0 ATGTTGGCCTGCTGCGTAAAGGCTT---TATCACAAACAGGACATTTGTATGGCTTGAGA 354 consensus_7724#1 GTGTTAGTAATAGAAGGGGGGTTNTGGTTGTTGCTGTTAAGACGAT-GAATCACTTTCGA 328 **** * * * * * * * * *** * * ** *** ** consensus_7724#0 CCAGTATGTAACATTTGATGTTTAATCATGTTGGCGTGTTGCGTAAATGCCTTTTCGCAA 414 consensus_7724#1 TCG---TCTCGCGTATCGTCATCAATCAT--CGTCTTCCCGCCTTCATTATAGTATCGAT 383 * * * * * * * * ****** * * * ** * ** * * consensus_7724#0 ACGGGACACTTGTACGGCTTTAATCCTGTATGAAGCATTTGATGTTTGACCATGTTTGCA 474 consensus_7724#1 GTAAAACACTC-TATGGAATTA--CCGGTATGAAGCATCTCGTGTTTGACCATGTTGGCC 440 ***** ** ** *** ** *********** * ************** ** consensus_7724#0 TGCTGCGAGAACGCTTTCTCGCACACCGGACATTTGTACGGCTTAAGACCGGTATGCAGA 534 consensus_7724#1 TGCTGGGCGAACGCCTTGCCACAGGTGGAACATTTGTACGGTTTAAGGCCGGTGTGCAAC 500 ***** * ****** ** * ** * ************ ***** ***** **** consensus_7724#0 AGTTGATGTTTCAGCATGTTGGCTTGCTGGGTGAAGCATTTTTCACAGATGGGACACTTG 594 consensus_7724#1 ATTTGATGTTTCACCATGTTGGCCTGCTGCGTAAAGGCTTTATCACAAACAGGACATTTG 560 * *********** ********* ***** ** *** *** ***** * ***** *** consensus_7724#0 AACGGCTTTAGTCCATTGTGGACGAGATCATGTCGTTGCAGGTTGGCCAGTTGGGTGAAG 654 consensus_7724#1 TATGGCTTGAGACCAGTATGTAACATTTGATGTTAAT-CATGTTGGCGTGTACCTCGGGG 619 * ***** ** *** * ** * * * **** * ** ****** ** * * consensus_7724#0 CCTTTGTTACAAATCTGACAAACGAAAGGACGTTCGCCCGTGTGTGCCTTGGTGTACTTC 714 consensus_7724#1 CNATTCTGCTGA------------------------------------------------ 631 * ** * * consensus_7724#0 CACATGGAACTATGGCTGGGAAATTCTTTGCTGCATATTTCGCACTTAAACTTGTTCTCC 774 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GTCAAATGCTTTGTCCGGTGCTGTTCCATTTCCTCCATCGTATCGAAACGCTTCCGGCAC 834 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 TGTGGACACTTGATTTTGTTGAGATTGATAAGCGTATTGCCCAGGGATAGCGACACGACA 894 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 AAATGCTTATTGTCAACCAGATGATCCTGCTGGAGCATTTCCGACCGTGTTAGCTCTATC 954 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 ACACCATCATCGAATTGGGTTTGCAGCGGGTAGAACATGGTTTTGGCCTGCTGCAGCGGC 1014 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 TGCTGCTCCGGTGACTGCTCCGGGTTGGTGGCCGCTGCTCAAGGACACGCACGGAAAAGG 1074 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GGGGGATGAGATGAAGATATATCACAGCTGCTGCTAAGTTGGCCACACACACTGGAGAGA 1134 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 GCACACGGCCCTGCTGCTGCTGCTGGAGCACGTTCGATCGGGAAGGCGACGCACCACACA 1194 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 ACCGCGCTCCAGCGTACACGCGACACAAGAGAGCGCTGCTGATCCGGAAGCCGCTGCTGC 1254 consensus_7724#1 ------------------------------------------------------------ consensus_7724#0 TGCTGCTGTGTCG 1267 consensus_7724#1 ------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||