These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7726#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1267 fasta sequence [AGTGATCTGTTTGTCAAGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATAAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGATCGGTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTTTGTTACTAGTATGTAAAAAAAACAACAATACTTTCCCAAGGTAGTGTACACAAATTAAAGCCGTAAACTTTTGTATTATGAAATGTTGTTTGTTTCCGATTGGTTCCCAAATTAAACCGTTCTCGGAGACAACTACAAACGATCTTGTAGCACTGGTGCGCAGGTTCCGAATGTAATATTTTCACAACTTTTTGGCTGGTTCACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA-CTGTGAGTACTGATCACATGATCTTGTTACGG-CAGCTGCAAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTGCGGTTAATCAATGTAATA-GTTGGTATCAAGC-AACCAA-TTCAATGTTCTTATCGCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAA-TTGTACGACGAGATCTTTCCGAAGAAAAGGTTCTTG-TTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTTAACCGT-CAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAA---CCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATAACGTATTGAAACTGTAAAACAATTAGAATATTTAAGTGACAATTCTAAAACTATGTTACGGTATCGCAATAAAAACAAAAAGTCGTATGAAACCTATCAAAATTNAAACAACAAGGCAGCATGTGC] [+] EMBL BX625973 [AGTGATCTGTTTGTCAAGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATAAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGATCGGTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTTTGTTACTAGTATGTAAAAAAAACAACAATACTTTCCCAAGGTAGTGTACACAAATTAAAGCCGTAAACTTTTGTATTATGAAATGTTGTTTGTTTCCGATTGGTTCCCAAATTAAACCGTTCTCGGAGACAACTACAAACGATCTTGTAGCACTGGTGCGCAGGTTCCGAATGTAATATTTTCACAACTTTTTGGCTGGTTCACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTT TTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCAAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTANAATACGGTCATGAACTTACCTGTTCATAGCGNGCGGTTAATCAATGTAATA GTTGGTATCAAGC AACCAA TTCAATGGTC ] [+] EMBL BM636610 [ ccgGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTTTGTTACTAGTATGT AAAAAAACAACAATACTTTCCCAAGGTAGTGTACACAAATTAAAGCCGTAAACTTTTGTATTATGATATGTTGTTTGTTTCCGATTGGTTCCCAAATTAAACCGTTCTCGGAGACAACTACAAACGATCTTGTAGCACTGGTGCGCAGGTTCCGAATGTAATATTTTCACAACTTTTTGACTGGTTCACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTT TTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTAGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCA ] [+] EMBL BX615696 [ CACTAATACTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGATTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCAAAGTATTTAGTATAGTATGAATTGGAAAGAACTCTGAGTCGTTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTGCGGTTAATCAATGTAATA GTTGGTATCAAGC AACCAA TTCAATGTTCTTATCCCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAA TTGTACGACGAGATCTTTCCGAAGAAAAGGTTCTTG TTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTTAACCGT CAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAA CCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATAACGTATTGA ] [+] EMBL BM575634 [ ccgCTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAGTCGG ATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACTTTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTATACAAGGAATTGGTTTGGGTGTTGTGTTTTGTACCAAGAGTGAATA CTGTGAGTACTGATCACATGATCTTGTTACGG CAGCTGCAAAGTATTCAGTGCAGTATGGATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTACCGTCAATCAATGTAATA GTTGGTATCAAGC AACCAA TTCAATGTTCTTATCGCGGTGGTGTACCTAATCTACAAGATCGTTCTGGAA TTGTACGACGAGATCTTTCCGAAGAAAAGGTT TTT TTTTGTCTTAGTTTGGTTTTAGTTTAGCGTATTTAACCGT CAGGGGGTACCATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAAAACCCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATAT ] [+] EMBL BM593455 [ ccgCTTCTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAACACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTACAGGTTGGTCTTCTTCAGTCGG ATACCTTTGTCATTTATTTTTGTCGTATTTCCTACAC ] [-] EMBL BX466836 [ nganATATCTGTGAGTACTGATCACATGATCTTGTTACGGTCAGCTGCGAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCATGAACTTACCTGTTCATAGCGTCCGGTTAATCAATGTAATACGTTGGTATCAAGCGAACCAAGTTCAATGTTCTTATCGCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAACTTGTACGACGAGATCTTTCCGAAGAAAAGGTTCTTGCTTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTTAACCATCCAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAA CCCATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTTCTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATAACGTATTGAAACTGTAAAACAATTAGAATATTTAAGTGACAATTCTAAAACTATGTTACGGTATCGCAATAAAAACAAAAAGTCGTATGAAACCTATCAAAATTNAAACAACAAGGCAGCATGTGC] consensusID : consensus_7726#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 576 fasta sequence [TGCTCGAGCAGAATCGCCCCGAGGTTAATATTTTCCCTCTTTTATCTGCAGATGCAGCGAACATTTTAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGAACGGAGTAGTCCGGGCGTGAGTGATCTGTTTGTCAACGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATACAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGCATACGGCTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTACATAGTTACTAGTATGTNACCAACAAAACAACAATACTTTCCCAAGGTAGTGTACCACAAATTAAAAGCCGTAAACTNNTCTGTATTATGAACATGTNAGGTCCTGTTCACCGGATATGGGTTCCCCAAATTAACACCGTATCTCGGAGACAATTACCAAAACNGATCTTGTAGCNACTTGGTTGCCGCAGGGTTCCGGAACTGTAATATTTTCCACACAAACTTT] [+] EMBL AL697266 [TGCTCGAGCAGAATCGCCCCGAGGTTAATATTTTCCCTCTTTTATCTGCAGATGCAGCGAACATTTTAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGAACGGAGTAGTCCGGGCGTGAGTGATCTGTTTGTCAACGGAAATCATCCACAAGCTTGTGCCCGGTTTCTCCGAGACGCGAATCAATAAGCTTATAGATACAAGTGACACGGTAGGTTCTGTTCCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGCATACGGCTGTGGATGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTACATAGTTACTAGTATGTNACCAACAAAACAACAATACTTTCCCAAGGTAGTGTACCACAAATTAAAAGCCGTAAACTNNTCTGTATTATGAACATGTNAGGTCCTGTTCACCGGATATGGGTTCCCCAAATTAACACCGTATCTCGGAGACAATTACCAAAACNGATCTTGTAGCNACTTGGTTGCCGCAGGGTTCCGGAACTGTAATATTTTCCACACAAACTTT] consensusID : consensus_7726#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 540 fasta sequence [GATCGCNGAGGTTAAGAGCGAAAAATGGTTGCTCCGACAGCCTGAGCGGATCGGGCAATGAGAACGAGAAGCGCAGTAGCAGTTTGCGGCGCGAACGGGATTCGCCCAGCCACAACAACACAAGCAGCAATGGCAACTCGCGCACCAACAGTATTACGAATGTAAATAACAACTCCAGCAAAAGCTCGAGTCGATCGTCCTCCACGACGACGCCAACTACGACGACGACGTCAACAAACAGTGGTTGTCTTAAGGCAATTATTTTCCCTCTTTTATCTGAGATGCAGCGAAATTATAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGGAACGGAGTAGATCCGGGCGTGAGTGATCTGGCGTGAATGGAACATCATGCACAAGCTTGTACCCGGTTTCTGCGAGCACGCGAATCAATACGCTTATNGATAAACGTGACACGTGATTCCAAGAGTAAAGCGATNAAAAGGCGGTAAACAACGGAATTGGATGGGGTGTGGGTTGTGGAGCAAGGAGTGCAATA] [+] EMBL AL929699 [GATCGCNGAGGTTAAGAGCGAAAAATGGTTGCTCCGACAGCCTGAGCGGATCGGGCAATGAGAACGAGAAGCGCAGTAGCAGTTTGCGGCGCGAACGGGATTCGCCCAGCCACAACAACACAAGCAGCAATGGCAACTCGCGCACCAACAGTATTACGAATGTAAATAACAACTCCAGCAAAAGCTCGAGTCGATCGTCCTCCACGACGACGCCAACTACGACGACGACGTCAACAAACAGTGGTTGTCTTAAGGCAATTATTTTCCCTCTTTTATCTGAGATGCAGCGAAATTATAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGGAACGGAGTAGATCCGGGCGTGAGTGATCTGGCGTGAATGGAACATCATGCACAAGCTTGTACCCGGTTTCTGCGAGCACGCGAATCAATACGCTTATNGATAAACGTGACACGTGATTCCAAGAGTAAAGCGATNAAAAGGCGGTAAACAACGGAATTGGATGGGGTGTGGGTTGTGGAGCAAGGAGTGCAATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7726#0 ------------------------------------------------------------ consensus_7726#1 TGCTCGAGCAGAATCGCCCCGAGGTTAATATTTTCCCTCTTTTATCTGCAGATGCAGCGA 60 consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 ------------------------------------------------------------ consensus_7726#1 ACATTTTAACAGTGGTTCCGACATGGGAGACCTACGGCTGGCCTTCGAGAGCGCCGAACG 120 consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 ----------------AGTGATCTGTTTGTCAA-GGAAATCATCCACAAGCTTGTGCCCG 43 consensus_7726#1 GAGTAGTCCGGGCGTGAGTGATCTGTTTGTCAACGGAAATCATCCACAAGCTTGTGCCCG 180 consensus_7726#2 ----------------------------GATCGCNGAGGTTAAGAGCGAA-----AAATG 27 * ** * * * * * consensus_7726#0 GTTTCTCCGAGA-CGCGAATCAATAAGCTTATAGATA-AAGTGACACGGTAGGTTCTGTT 101 consensus_7726#1 GTTTCTCCGAGA-CGCGAATCAATAAGCTTATAGATACAAGTGACACGGTAGGTTCTGTT 239 consensus_7726#2 GTTGCTCCGACAGCCTGAGCGGATCGGGCAATGAGAACGAGAAGCGCAGTAG----CAGT 83 *** ****** * * ** ** * ** * ** * * **** * consensus_7726#0 CCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCG---ATCGGTGTGGA 158 consensus_7726#1 CCAATGCACTAACGGAACCCCACTATCCTTATACGGTACGGGCGCGCATACGGCTGTGGA 299 consensus_7726#2 TTGCGGCGCGAACGGGATTCGCCCAGCCACA-ACAACACAAGCAGCAATGGCAACTCGCG 142 ** * ***** * * * * ** * ** ** ** * consensus_7726#0 TGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGT---TTGTTAC 215 consensus_7726#1 TGTGTGATGATGATGGTGATGGAATGGTTTTCTAGTGCTAAATCGTTCGTACATAGTTAC 359 consensus_7726#2 CAC-CAACAGTATTACGAATGTAAATAACAACTCCAGCAAAAGCTCGAGTCGATCGTCCT 201 * * * *** ** ** ** *** * ** * ** consensus_7726#0 TAGTATGTAA---AAAAAACAACAATACTTTCCCAAGGTAGTGTAC-ACAAATTAAA-GC 270 consensus_7726#1 TAGTATGTNACCAACAAAACAACAATACTTTCCCAAGGTAGTGTACCACAAATTAAAAGC 419 consensus_7726#2 CCACG-ACGACGCCAACTACGACGACGACGTCAACAAACAGTG----GTTGTCTTAAGGC 256 * * ** ** * ** * **** * ** ** consensus_7726#0 CGTAAACTTTT--GTATTATG-AA-ATGTTG---TTTGTTT-CCG---ATTGGTTCCC-A 318 consensus_7726#1 CGTAAACTNNTCTGTATTATG-AACATGTNAGGTCCTGTTCACCGGATATGGGTTCCCCA 478 consensus_7726#2 AATTATTTTCCCTCTTTTATCTGAGATGCAG---CGAAATTATAA--CAGTGGTTCCG-A 310 * * * * **** * *** * * ****** * consensus_7726#0 AATTAA-ACCGT-TCTCGGAGACAACTACAAA---CGATCTTGTAGCA--CTGGTG--CG 369 consensus_7726#1 AATTAACACCGTATCTCGGAGACAATTACCAAAACNGATCTTGTAGCNACTTGGTTGCCG 538 consensus_7726#2 CATGGGAGACCTACGGCTG-GCCTTCGAGAGCGCCGGAACGGAGTAGATCCGGGCGTGAG 369 ** * * * * * * * ** * ** * consensus_7726#0 CAGG-TTCCGAA--TGTAATATTTTC---ACAACTTTTTGGCTGGTTC--ACTAATACTT 421 consensus_7726#1 CAGGGTTCCGGAACTGTAATATTTTCCACACAAACTTT---------------------- 576 consensus_7726#2 TGATCTGGCGTGAATGGAACATCATGC--ACAAGCTTGTACCCGGTTTCTGCGAGCACGC 427 * ** ** ** ** * **** ** consensus_7726#0 CTTCAAACCCACTGTATTAAAATCACTAATTTAGTGTTGTAAGAGGATTTCTTTTCTAAC 481 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 GAATCAATACGCT-TATNGATAAACGTGACACGTGATTCCAAGAGTAAAGCGATNAAAAG 486 consensus_7726#0 ACTGCTCATACCAATGGAGTGTTTGCACTGCAAATGGTTGTAGAGGTTGGTCTTCTTCAG 541 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 GCGGT--AAACAACGGAATTGGATGGGGTGTG---GGTTGTGGAGCAAGGAGTGCAATA- 540 consensus_7726#0 TCGGAGTTGAATACGTTTGTCATTTATTTTTGTCGTATTTCCTACACCCTTTCGACTACT 601 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 TTCAGTGATTCCAGAGTAAAGCGATAAAAAAGCGGTAAACAAGGAATTGGTTTGGGTGTT 661 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 GTGTTTTGTACCAAGAGTGAATACTGTGAGTACTGATCACATGATCTTGTTACGGCAGCT 721 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 GCAAAGTATTCAGTATAGTATGAATTGGAAAGAACTCTGAGTCGCTTAGAATACGGTCAT 781 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 GAACTTACCTGTTCATAGCGTGCGGTTAATCAATGTAATAGTTGGTATCAAGCAACCAAT 841 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 TCAATGTTCTTATCGCGGTGGTGTACCTAATCTGCAAGATCGTTCTGGAATTGTACGACG 901 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 AGATCTTTCCGAAGAAAAGGTTCTTGTTTTGTCTTAGTTTGGTTTTAGTTTTGCGTATTT 961 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 AACCGTCAGGGGGTACTATCCTAACAGTTAAAATCGGACGTAAACCCTAATAAAAAACCC 1021 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 ATACCTGTATCGCGGTCGAATGCATAGTCGTGTAATTTTTGTTTGTTTTCGTTATACTTT 1081 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 CTGCGCAATGTTAATTAAACTATTGAACAATAATATGTAAAAGATGAAATGAAGAAAATA 1141 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 ACGTATTGAAACTGTAAAACAATTAGAATATTTAAGTGACAATTCTAAAACTATGTTACG 1201 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 GTATCGCAATAAAAACAAAAAGTCGTATGAAACCTATCAAAATTNAAACAACAAGGCAGC 1261 consensus_7726#1 ------------------------------------------------------------ consensus_7726#2 ------------------------------------------------------------ consensus_7726#0 ATGTGC 1267 consensus_7726#1 ------ consensus_7726#2 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||