These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence [CCGCAGCTGTCGCCTGTGACATAACAAAATACGAAAATTAAAATCACAACAAAGGACGAAAGTTGCAGCGTTTTTTGCGCCGACCGGTCGCGTTTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCGAAACCTGACGTGCGATCA-GCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGGCGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGGAAAGAGATTACATCTCCATCGCGGGTGGAAGGATGGCCCCATTTCACGGAAATATTTATGGTCTCCGCCATGACCGGCG] [+] EMBL BM629080 [CCGCAGCTGTCGCCTGTGACATAACAAAATACGAAAATTAAAATCACAACAAAGGACGAAAGTTGCAGCGTTTTTTGCGCCGACCGGTCGCGTTTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACG ] [+] EMBL BX607108 [ GGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCGAAACCTGACGTGCGATCA GCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGGCGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGGAAAGAGATTACATCTCCATCGCGGGTGGAAGGATGGCCCCATTTCACGGAAATATTTATGGTCTCCGCCATGACCGGCG] [+] EMBL BM644703 [ CTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCGAAACCTGACGTGCGATCATGCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGGCGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGGAAAGAGATTACATCTCCATCGCG ] consensusID : consensus_7735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 671 fasta sequence [CGACCCACGCGTCCGGACGAAAGTTGCAGCGTTTTTTGCACCGACCGGTCGTGTGTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAAC-AAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCG] [+] EMBL BM621807 [CGACCCACGCGTCCGGACGAAAGTTGCAGCGTTTTTTGCACCGACCGGTCGTGTGTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAAC AAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCG] [+] EMBL BM599038 [ ccgATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTtct ] [+] EMBL BX614484 [ TGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCt ] [+] EMBL BX614642 [ CCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATAC ] consensusID : consensus_7735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence [ATCGCCGAGAAGTGCAGCGTTTTGCACGACGGTCGTGTGTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAAGAAATCCGTATCTGGTCCAGCACCAATTTCCTGGGCTGCAGCACTGGCAGCGGTGCTTTAGTGCCCCGGTTGTCCGAGAATGTTAGCCACGGAGGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGGCATCGTGGGAATGCAAATGCTGGCAAAAGTACACTGACTTAATCCATTGATAGATCAACCGAGTCTGTCCTGTGTCGGCAAGGTGCACACAACGCCGGAAGGCCTCGAAGGCTATCCACCAGCAAAAGCAAACTCGCAAGCCATCCTGTTCGACACACCGGGGCTCGTCGNGTAGCCGCGGCAATTA] [+] EMBL AL931236 [ATCGCCGAGAAGTGCAGCGTTTTGCACGACGGTCGTGTGTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAAGAAATCCGTATCTGGTCCAGCACCAATTTCCTGGGCTGCAGCACTGGCAGCGGTGCTTTAGTGCCCCGGTTGTCCGAGAATGTTAGCCACGGAGGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGGCATCGTGGGAATGCAAATGCTGGCAAAAGTACACTGACTTAATCCATTGATAGATCAACCGAGTCTGTCCTGTGTCGGCAAGGTGCACACAACGCCGGAAGGCCTCGAAGGCTATCCACCAGCAAAAGCAAACTCGCAAGCCATCCTGTTCGACACACCGGGGCTCGTCGNGTAGCCGCGGCAATTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7735#0 CCGCAGCTGTCGCCTGTGACATAACAAAATACGAAAATTAAAATCACAACAAAGGACGAA 60 consensus_7735#1 ---------------------------------------CGACCCACGCGTCCGGACGAA 21 consensus_7735#2 ---------------------------------------------------ATCGCCGAG 9 * *** consensus_7735#0 AGTTGCAGCGTTTTTTGCGCCGACCGGTCGCGTTTTTCTTCATCCTTTCGTCGTAATGCA 120 consensus_7735#1 AGTTGCAGCGTTTTTTGCACCGACCGGTCGTGTGTTTCTTCATCCTTTCGTCGTAATGCA 81 consensus_7735#2 AAGTGCAGCGTTTTGCACGA----CGGTCGTGTGTT-CTTCATCCTTTCGTCGTAATGCA 64 * *********** * ****** ** ** *********************** consensus_7735#0 CGACATTGGGATGGCTTTGCTGTTGCTGCGAAG--AATCCGTATC-GGTCCAGCACCA-T 176 consensus_7735#1 CGACATTGGGATGGCTTTGCTGTTGCTGCGAAG--AATCCGTATC-GGTCCAGCACCA-T 137 consensus_7735#2 CGACATTGGGATGGCTTTGCTGTTGCTGCGAAAGAAATCCGTATCTGGTCCAGCACCAAT 124 ******************************** ********** ************ * consensus_7735#0 TCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCC-GGTTGTCCGAGAATGTAAGC 235 consensus_7735#1 TCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCC-GGTTGTCCGAGAATGTAAGC 196 consensus_7735#2 TTCCTGGGCTGCAGCACTGGCAGCGGTGCTTTAGTGCCCCGGTTGTCCGAGAATGTTAGC 184 * * ** *********** ******************* **************** *** consensus_7735#0 AACGA--GAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGC 293 consensus_7735#1 AACGA--GAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGC 254 consensus_7735#2 CACGGAGGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGC 244 *** ****************** *********** ********************** consensus_7735#0 TCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGA-TTAATCGA 352 consensus_7735#1 TCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGA-TTAATCGA 313 consensus_7735#2 TCATCAAAGTGGGCATCGTGGGAATGC-AAATGCTGGCAAAAGTACACTGACTTAATCCA 303 ************ ************** *********************** ****** * consensus_7735#0 TTGATAGATCAAC-GAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGC-GGAAGGCCT 410 consensus_7735#1 TTGATAGATCAAC-GAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGC-GGAAGGCCT 371 consensus_7735#2 TTGATAGATCAACCGAGTCTGTCCTGTGTCGGC-AAGGTGCACACAACGCCGGAAGGCCT 362 ************* ******************* *********** **** ********* consensus_7735#0 CGAAGGCTATCCAC-AGCAAA-GCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCT 468 consensus_7735#1 CGAAGGCTATCCAC-AGCAAA-GCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCT 429 consensus_7735#2 CGAAGGCTATCCACCAGCAAAAGCAAACTCGCAAGCCATCCTGTTCGACACACCGGGGCT 422 ************** ****** ************** *********************** consensus_7735#0 CGTCGG-TAGCCG-GGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGC 526 consensus_7735#1 CGTCGG-TAGCCG-GGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGC 487 consensus_7735#2 CGTCGNGTAGCCGCGGCAATTA-------------------------------------- 444 ***** ****** ** ***** consensus_7735#0 CGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGG 586 consensus_7735#1 CGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGG 547 consensus_7735#2 ------------------------------------------------------------ consensus_7735#0 ACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCG 646 consensus_7735#1 ACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCG 607 consensus_7735#2 ------------------------------------------------------------ consensus_7735#0 AGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATT 706 consensus_7735#1 AGCTTTCTGATACTGAACAAA-TCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATT 666 consensus_7735#2 ------------------------------------------------------------ consensus_7735#0 GTGCGAAACCTGACGTGCGATCAGCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGG 766 consensus_7735#1 GTGCG------------------------------------------------------- 671 consensus_7735#2 ------------------------------------------------------------ consensus_7735#0 CGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGG 826 consensus_7735#1 ------------------------------------------------------------ consensus_7735#2 ------------------------------------------------------------ consensus_7735#0 AAAGAGATTACATCTCCATCGCGGGTGGAAGGATGGCCCCATTTCACGGAAATATTTATG 886 consensus_7735#1 ------------------------------------------------------------ consensus_7735#2 ------------------------------------------------------------ consensus_7735#0 GTCTCCGCCATGACCGGCG 905 consensus_7735#1 ------------------- consensus_7735#2 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||