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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7735#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 3 consensus length = 905 fasta sequence
[CCGCAGCTGTCGCCTGTGACATAACAAAATACGAAAATTAAAATCACAACAAAGGACGAAAGTTGCAGCGTTTTTTGCGCCGACCGGTCGCGTTTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCGAAACCTGACGTGCGATCA-GCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGGCGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGGAAAGAGATTACATCTCCATCGCGGGTGGAAGGATGGCCCCATTTCACGGAAATATTTATGGTCTCCGCCATGACCGGCG]
[+] EMBL BM629080 [CCGCAGCTGTCGCCTGTGACATAACAAAATACGAAAATTAAAATCACAACAAAGGACGAAAGTTGCAGCGTTTTTTGCGCCGACCGGTCGCGTTTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACG ]
[+] EMBL BX607108 [ GGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCGAAACCTGACGTGCGATCA GCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGGCGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGGAAAGAGATTACATCTCCATCGCGGGTGGAAGGATGGCCCCATTTCACGGAAATATTTATGGTCTCCGCCATGACCGGCG]
[+] EMBL BM644703 [ CTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCGAAACCTGACGTGCGATCATGCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGGCGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGGAAAGAGATTACATCTCCATCGCG ]
consensusID : consensus_7735#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 671 fasta sequence
[CGACCCACGCGTCCGGACGAAAGTTGCAGCGTTTTTTGCACCGACCGGTCGTGTGTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAAC-AAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCG]
[+] EMBL BM621807 [CGACCCACGCGTCCGGACGAAAGTTGCAGCGTTTTTTGCACCGACCGGTCGTGTGTTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAAC AAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATTGTGCG]
[+] EMBL BM599038 [ ccgATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTtct ]
[+] EMBL BX614484 [ TGCTGCGAAGAATCCGTATCGGTCCAGCACCATTCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCt ]
[+] EMBL BX614642 [ CCAGCGGTGCTTTAGTGCCCGGTTGTCCGAGAATGTAAGCAACGAGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGATTAATCGATTGATAGATCAACGAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGCGGAAGGCCTCGAAGGCTATCCACAGCAAAGCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCTCGTCGGTAGCCGGGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGCCGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGGACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCGAGCTTTCTGATAC ]
consensusID : consensus_7735#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 444 fasta sequence
[ATCGCCGAGAAGTGCAGCGTTTTGCACGACGGTCGTGTGTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAAGAAATCCGTATCTGGTCCAGCACCAATTTCCTGGGCTGCAGCACTGGCAGCGGTGCTTTAGTGCCCCGGTTGTCCGAGAATGTTAGCCACGGAGGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGGCATCGTGGGAATGCAAATGCTGGCAAAAGTACACTGACTTAATCCATTGATAGATCAACCGAGTCTGTCCTGTGTCGGCAAGGTGCACACAACGCCGGAAGGCCTCGAAGGCTATCCACCAGCAAAAGCAAACTCGCAAGCCATCCTGTTCGACACACCGGGGCTCGTCGNGTAGCCGCGGCAATTA]
[+] EMBL AL931236 [ATCGCCGAGAAGTGCAGCGTTTTGCACGACGGTCGTGTGTTCTTCATCCTTTCGTCGTAATGCACGACATTGGGATGGCTTTGCTGTTGCTGCGAAAGAAATCCGTATCTGGTCCAGCACCAATTTCCTGGGCTGCAGCACTGGCAGCGGTGCTTTAGTGCCCCGGTTGTCCGAGAATGTTAGCCACGGAGGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGCTCATCAAAGTGGGCATCGTGGGAATGCAAATGCTGGCAAAAGTACACTGACTTAATCCATTGATAGATCAACCGAGTCTGTCCTGTGTCGGCAAGGTGCACACAACGCCGGAAGGCCTCGAAGGCTATCCACCAGCAAAAGCAAACTCGCAAGCCATCCTGTTCGACACACCGGGGCTCGTCGNGTAGCCGCGGCAATTA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7735#0 CCGCAGCTGTCGCCTGTGACATAACAAAATACGAAAATTAAAATCACAACAAAGGACGAA 60
consensus_7735#1 ---------------------------------------CGACCCACGCGTCCGGACGAA 21
consensus_7735#2 ---------------------------------------------------ATCGCCGAG 9
* ***
consensus_7735#0 AGTTGCAGCGTTTTTTGCGCCGACCGGTCGCGTTTTTCTTCATCCTTTCGTCGTAATGCA 120
consensus_7735#1 AGTTGCAGCGTTTTTTGCACCGACCGGTCGTGTGTTTCTTCATCCTTTCGTCGTAATGCA 81
consensus_7735#2 AAGTGCAGCGTTTTGCACGA----CGGTCGTGTGTT-CTTCATCCTTTCGTCGTAATGCA 64
* *********** * ****** ** ** ***********************
consensus_7735#0 CGACATTGGGATGGCTTTGCTGTTGCTGCGAAG--AATCCGTATC-GGTCCAGCACCA-T 176
consensus_7735#1 CGACATTGGGATGGCTTTGCTGTTGCTGCGAAG--AATCCGTATC-GGTCCAGCACCA-T 137
consensus_7735#2 CGACATTGGGATGGCTTTGCTGTTGCTGCGAAAGAAATCCGTATCTGGTCCAGCACCAAT 124
******************************** ********** ************ *
consensus_7735#0 TCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCC-GGTTGTCCGAGAATGTAAGC 235
consensus_7735#1 TCCTGGGCCTGCAGCACTGCCAGCGGTGCTTTAGTGCCC-GGTTGTCCGAGAATGTAAGC 196
consensus_7735#2 TTCCTGGGCTGCAGCACTGGCAGCGGTGCTTTAGTGCCCCGGTTGTCCGAGAATGTTAGC 184
* * ** *********** ******************* **************** ***
consensus_7735#0 AACGA--GAGTGGAACGGAGCAGTCGAACGCACCAGCGGACAGCAATAGCGCGGAACGGC 293
consensus_7735#1 AACGA--GAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGC 254
consensus_7735#2 CACGGAGGAGTGGAACGGAGCAGTCAAACGCACCAGCAGACAGCAATAGCGCGGAACGGC 244
*** ****************** *********** **********************
consensus_7735#0 TCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGA-TTAATCGA 352
consensus_7735#1 TCATCAAAGTGGCCATCGTGGGAATGCCAAATGCTGGCAAAAGTACACTGA-TTAATCGA 313
consensus_7735#2 TCATCAAAGTGGGCATCGTGGGAATGC-AAATGCTGGCAAAAGTACACTGACTTAATCCA 303
************ ************** *********************** ****** *
consensus_7735#0 TTGATAGATCAAC-GAGTCTGTCCTGTGTCGGCCAAGGTGCACACCACGC-GGAAGGCCT 410
consensus_7735#1 TTGATAGATCAAC-GAGTCTGTCCTGTGTCGGCCAAGGTGCACACAACGC-GGAAGGCCT 371
consensus_7735#2 TTGATAGATCAACCGAGTCTGTCCTGTGTCGGC-AAGGTGCACACAACGCCGGAAGGCCT 362
************* ******************* *********** **** *********
consensus_7735#0 CGAAGGCTATCCAC-AGCAAA-GCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCT 468
consensus_7735#1 CGAAGGCTATCCAC-AGCAAA-GCAAACTCGCAAGCAATCCTGTTCGACACACCGGGGCT 429
consensus_7735#2 CGAAGGCTATCCACCAGCAAAAGCAAACTCGCAAGCCATCCTGTTCGACACACCGGGGCT 422
************** ****** ************** ***********************
consensus_7735#0 CGTCGG-TAGCCG-GGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGC 526
consensus_7735#1 CGTCGG-TAGCCG-GGAAATTAAGAAGCACCAGCTGGACACACAGTTTGTGTCTGCGTGC 487
consensus_7735#2 CGTCGNGTAGCCGCGGCAATTA-------------------------------------- 444
***** ****** ** *****
consensus_7735#0 CGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGG 586
consensus_7735#1 CGGCATGCCATCCAACATTCGGCCCTAATCGGTGTTGTGCACGATGTGTCGAACTCGTGG 547
consensus_7735#2 ------------------------------------------------------------
consensus_7735#0 ACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCG 646
consensus_7735#1 ACACGCCACGCGCTCAGCCCGGTGCTGTTGCGTGTGCTGGAAGAGTACGCCCACATACCG 607
consensus_7735#2 ------------------------------------------------------------
consensus_7735#0 AGCTTTCTGATACTGAACAAAATCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATT 706
consensus_7735#1 AGCTTTCTGATACTGAACAAA-TCGATACGTTGAAATCGAAGCGCATCCTGCTGGACATT 666
consensus_7735#2 ------------------------------------------------------------
consensus_7735#0 GTGCGAAACCTGACGTGCGATCAGCTGGCAAGCATCCGGAACTACGGTCCGCCAACTAGG 766
consensus_7735#1 GTGCG------------------------------------------------------- 671
consensus_7735#2 ------------------------------------------------------------
consensus_7735#0 CGCCGGAAGAGCAGGGATGCTGGCGCTGAAGAGAAGGCACCAAGCGACGGTCTGGAGGGG 826
consensus_7735#1 ------------------------------------------------------------
consensus_7735#2 ------------------------------------------------------------
consensus_7735#0 AAAGAGATTACATCTCCATCGCGGGTGGAAGGATGGCCCCATTTCACGGAAATATTTATG 886
consensus_7735#1 ------------------------------------------------------------
consensus_7735#2 ------------------------------------------------------------
consensus_7735#0 GTCTCCGCCATGACCGGCG 905
consensus_7735#1 -------------------
consensus_7735#2 -------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||