These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7746#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1031 fasta sequence [CGACATCCAACAGCTGCCTGCGAACGGGTGAGAGTTTTGGTGCGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGCTG-AATCAGGTTGATGTTGGTGTGTGGTGCATGAGGCTAGGATGGAGTTCTTCTTCTAAAATGTTTTAAACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTTCAATGCTGTCCAGTCCCAGTTTCATTCACCCCCGAAATCTCAAGTGCTTGTCCCGTTTTCTCATTATCACGTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAACGGACGCGTGCCACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAGAGTGGCGCGAATTTAATTTATCACTTCGAGTGCGGCACCGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGCATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG-GCAACGCAGATTG-TCGACAAGTTTCCCGCA-GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTACTTTAGTGTGTACTTTTTGTTTCAATAAAGTGTGGAATGTAATAAAAAAAAAAAA] [+] EMBL CNS08KSQ [CGACATCCAACAGCTGCCTGCGAACGGGTGAGAGTTTTGGTGCGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGCTG AATCAGGTTGATGTTGGTGTGTGGTGCATGAGGCTAGGATGGAGTTCTTCTTCTAAAATGTTTTAAACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTTCAATGCTGTCCAGTCCCAGTTTCATTCACCCCCGAAATCTCAAGTGCTTGTCCCGTTTTCTCATTATCACGTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAACGGACGCGTGCCACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAGAGTGGCGCGAATTTAATTTATCACTTCGAGTGCGGCACCGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTGTTCGACA ] [+] EMBL CNS09I62 [ CCTGCGAACGGGTGAGAGTTTTGGTGCGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGCTGTAATCAGGTTGATGTTGGTGTGTGGTGCATGAGGCTAGGATGGAGTTCTTCTTCTAAAATGTTTTAAACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTTCAATGCTGTCCAGTCCCAGTTTCATTCACCCCCGAAATCTCAAGTGCTTGTC ] [-] EMBL CNS08KSR [ taAATGCTGTCCAGTCCCAGTTTAATTCACCCCCGAATTCTCAAGTGCTTGTCCCGTTTTCTCATTATCACGTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAACGGACGCGTGCAACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAAAGTGGCGCGAATTTAATTTATCACTTCGAGTGCGGCACCGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTAAACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGCATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGAACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTG TCGACAAGTTTCCCGCA GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTACTTTAGTGTGTACTTTTTGTTTCAATAAAGTGTGGAATGTAATAAAAAAAAAAAA] [-] EMBL CNS09I63 [ GAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGAATCGAACCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGCCGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAAAAGAGAGCAACGCAGATTG TCGAAAAGTTTCCCGCATGCCTGGCT ] [+] EMBL BX610790 [ TGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTTCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTG TCGACAAGTTTCCCGCA GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTA ] [+] EMBL BX610791 [ AAGTCCCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCGTTATAAGTCTCGTTCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACA ] [+] EMBL BX610789 [ CCGCGCGCAGTGTTTGTGCATTGATGCGCATTTCTTTATAAGTCTCGTTCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAGTGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAG GCAACGCAGATTG TCGACAAGTTTCCCGCA GCCTGGCTCGACCCGGTATGACGTCATTGGATTCTACATGTGTACTTTAGTGTGTACTTTATGTTTCAATAAAGTGT ] consensusID : consensus_7746#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 762 fasta sequence [ATTGCCACTGTACGGTTTTCATATGCAGGTGAAAAGCAGTCTCGGGCCAGAGCAGTGCATATTCCCCAAAACCAAAGTGTGCCATTTTCCGGGTCAGGGGTCCAAAATTCGCCAACCAAACTAGTGCCACTATCCTGGGACGTAGCTTAGGTATCGAGTGATGCAACGTTGGGCGGAGTGCAGTAATCACACGCAGCGCCATTTGACCACAAAACTTGTGGCCTCACGCTAACGGAGCTCGGTGGTGCAAATTCCAATATGGCGGCCTGCTCGCTCCATTTGCTCGCTCACACGCTGGGAACCCATGGTCACCGAAATCGCCACCGCCGATCATCATCATCATCATCATCATCACTCTTCGCGGACCACTCAGCGCGCGCCCGAGGACCGCTCACCAATACCGATACACCAGTCCGAGAGCGATTTCAGCTCCGCTGTGGCATGGTGTGTGCGTGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAANCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACNACACCACCAGTACAGCGCG] [+] EMBL BX627149 [ATTGCCACTGTACGGTTTTCATATGCAGGTGAAAAGCAGTCTCGGGCCAGAGCAGTGCATATTCCCCAAAACCAAAGTGTGCCATTTTCCGGGTCAGGGGTCCAAAATTCGCCAACCAAACTAGTGCCACTATCCTGGGACGTAGCTTAGGTATCGAGTGATGCAACGTTGGGCGGAGTGCAGTAATCACACGCAGCGCCATTTGACCACAAAACTTGTGGCCTCACGCTAACGGAGCTCGGTGGTGCAAATTCCAATATGGCGGCCTGCTCGCTCCATTTGCTCGCTCACACGCTGGGAACCCATGGTCACCGAAATCGCCACCGCCGATCATCATCATCATCATCATCATCACTCTTCGCGGACCACTCAGCGCGCGCCCGAGGACCGCTCACCAATACCGATACACCAGTCCGAGAGCGATTTCAGCTCCGCTGTGGCATGGTGTGTGCGTGCCACGCAAACAATGAGACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGAAACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATACAAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCACCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAANCATCGCTCCGTATGTCCCCCCCCTCCTACGCGTACNACACCACCAGTACAGCGCG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7746#0 ------------------CGACATCCAACAGCTGCCTGCGAACGGGTGAGAGTTTTGGTG 42 consensus_7746#1 ATTGCCACTGTACGGTTTTCATATGCAGGTGAAAAGCAGTCTCGGGCCAGAGCAGTG-CA 59 * ** ** * **** **** ** consensus_7746#0 CGTTGCTTGCAGGCATAGAATACGCGCCACTGTGTCCGCCGGGCGATGGGC-TGAATCAG 101 consensus_7746#1 TATTCCCCAAAACCAAAGTGTGCCATTTTCCGGGTCAGGGGTCCAAAATTCGCCAACCAA 119 ** * * ** ** * * * * *** * * * * * ** ** consensus_7746#0 GTTGATGTTGGTGTGTGGTGCATGAGGCTAGG-ATGGAGTTCTTCTTC------TAAAAT 154 consensus_7746#1 ACTAGTGCCACTATCCTGGGACGTAGCTTAGGTATCGAGTGATGCAACGTTGGGCGGAGT 179 * ** * * * * ** **** ** **** * * * * * consensus_7746#0 GTTTTAA--ACATTTTGCACAAATCTGACTAAAACCCCACTGTAACTTTATCTT--CAAT 210 consensus_7746#1 GCAGTAATCACACGCAGCGCCA-TTTGACCACAAAACT--TGTGGCCTCACGCTAACGGA 236 * *** *** ** * * * **** * ** * *** * * * * * consensus_7746#0 GCTGTCCAGTCCCAGTTTCATT----CACCCCCGAAATCTCAAGTGCTTGTCC-CGTTTT 265 consensus_7746#1 GCTCGGTGGTGCAAATTCCAATATGGCGGCCTGCTCGCTCCATTTGCTCGCTCACACGCT 296 *** ** * * ** ** * * ** ** **** * * * * consensus_7746#0 -----CTCATTATCAC----GTCTCCATCCCCAATGGTGGTGGTGGTGGGTTTGTCGCAA 316 consensus_7746#1 GGGAACCCATGGTCACCGAAATCGCCACCGCCGATCATCATCATCATCA--TCATCATCA 354 * *** **** ** *** * ** ** * * * * * ** * consensus_7746#0 CGGA-CGCGTGCCACAGGGAGGGTAGTAGTAGTCGGCCGTCGTGGTGGTGGTAGAGTGGC 375 consensus_7746#1 CTCTTCGCGGACCACTCAGCGCGCGCCCGAGGACCGCTCAC-CAATACCGATACACCAGT 413 * **** **** * * * * * * ** * * * ** * * consensus_7746#0 GCGAATTTAATTTATCACTTCGAGTGCGGCAC----------CGCCACGCAAACAATGAG 425 consensus_7746#1 CCGAGAGCGATTT--CAGCTCCGCTGTGGCATGGTGTGTGCGTGCCACGCAAACAATGAG 471 *** **** ** ** ** **** ***************** consensus_7746#0 ACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGA 485 consensus_7746#1 ACCCCAAATTTTGAGTGATTCAGGCCGAGGGGTATGAGGAAGCTTGAGGAAGCACGGAGA 531 ************************************************************ consensus_7746#0 AACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATAC 545 consensus_7746#1 AACGCGCTGCGATGAGAGTTCGCATTCTGTTTTACACGCGCGCTTCACTAACACCAATAC 591 ************************************************************ consensus_7746#0 AAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCA 605 consensus_7746#1 AAATACCGTGCTTTGACGAGCCGTCTGTGAATGTGTGTGTGTCTTCTTTCAGCGAGCTCA 651 ************************************************************ consensus_7746#0 CCAACTTGGATCTGCTCGTCACATCGTGTTTTCTCGCTTACACTACAGCATCGAACCATC 665 consensus_7746#1 CCAACTTGGATCTGCTCGTCACATCGTGTTGTCTCGCTTACACTACAGCATCGAANCATC 711 ****************************** ************************ **** consensus_7746#0 GCTCCGTATGTCCCCCCCCTCCTACGCGTACAACACCACCAGTACAGCGCGACGCTTTGC 725 consensus_7746#1 GCTCCGTATGTCCCCCCCCTCCTACGCGTACNACACCACCAGTACAGCGCG--------- 762 ******************************* ******************* consensus_7746#0 CGGAGATGGTTGTGCGTGTTTTGTTCAAAGTCCCGCGCGCAGTGTTTGTGCATTGATGCG 785 consensus_7746#1 ------------------------------------------------------------ consensus_7746#0 CATTTCGTTATAAGTCTCGTGCGCCGGTGTGTTTTGGTGAAGTGTGCAGTGAATAAACAG 845 consensus_7746#1 ------------------------------------------------------------ consensus_7746#0 TGTGCACAGACGCACATGCAGTGCATGCATCGACAAGTAAGAATTTGATGAACAGAGGCA 905 consensus_7746#1 ------------------------------------------------------------ consensus_7746#0 ACGCAGATTGTCGACAAGTTTCCCGCAGCCTGGCTCGACCCGGTATGACGTCATTGGATT 965 consensus_7746#1 ------------------------------------------------------------ consensus_7746#0 CTACATGTGTACTTTAGTGTGTACTTTTTGTTTCAATAAAGTGTGGAATGTAATAAAAAA 1025 consensus_7746#1 ------------------------------------------------------------ consensus_7746#0 AAAAAA 1031 consensus_7746#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||