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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7753#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1105 fasta sequence
[TTTTTTTTTTTAATTAACCTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCTATCATCAGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGGATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCTTCTGCAGCGGGATTCCAATCAAATAATTTATAA-TACGCATCCAATACTTTCATAGCGTTCATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACTTTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG--TAA-ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG-CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC]
[+] EMBL CNS099DE [TTTTTTTTTTTAATTAACCTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCTATCATCAGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGGATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCTTCTGCAGCGGGATTCCAATCAAATAATTTATAA TACGCATCCAATACTTTCATAGCGTTCATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACATTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTTTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTC ]
[+] EMBL CNS09DUP [ TTTTTTAATTAAACTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCTATCATCAGTTATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTTCTGCGGATGAAGCTGTGGACTCCCTAGCTGTAAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCTTCTGCAGCGGGATTCCAATAAAATAATTTATAA TACGCATCCAATACTTTCATAGCGTTCATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACTTTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAACTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTTTTCTGTACTGGGTTGCATCTTTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTTAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCA ]
[+] EMBL CNS0936N [ AGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGGATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACGGTCCTGTAGTAATTTACGAACTGGTAGTAGGGGCCATTCGAATACTCTGTGGATTCACC ]
[-] EMBL BM638602 [ TTACGAACTGGTAGTAGCGGCCATTCGAATATTCTATGGATTCACCTTCGGCAGCGAGATTCCAATCACATAATTTATAATTACGCATCCAATACTTTTATAGCGTTCATCTTACACCCATTTTTCTACCACATAATTATGA TACTAAAGCTGCCATTTTAACAGCGGTCGATTGACTTTGTCTTTGATCAGCTAAAAAGGCCAACATACGCAAGAGCTTAGTTTAACGGTGGGGCAGAAAATACAGAAGAAGATTATTACGGTATTTCAGTCTCGATAGTAACAGCAGAGTGTTTTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTGCTAGACTTGGAACGTTTGAGCTATTCAATTGGGGAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGCTTGCCGATATCCTTAGCCATTTTCCTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCGGAAAATCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAATTTTTTTCCCGTTTAGGAACGCTTGTAGCTCGAGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACcgg ]
[-] EMBL CNS099DD [ TACTACTAAAGCTGCCATTTTAACAGCGGTCGATTGACATTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC]
[-] EMBL CNS09DUO [ ttACTTTGTCTTCGATCAACTAAAAAGGCCAACATACGCTAGAGCTTAGCTTAAGGGTGGGGCAGAAAATACAG TAA ATTATTACGGTATTTCAGTCTCGATAGTAACAGCACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCGCCCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC]
[-] EMBL CNS0936M [ GTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTATTCTAGACTTGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTTCTCATTCG CCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGCCATTTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCAAGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTGCTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCATCGTCTTGACGTTCTTTTTACTTTTAC]
consensusID : consensus_7753#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 726 fasta sequence
[ATCAGCTTAAATAGGCCAACATACGCAATAGCTTAGCTTAAGGTTGGGCAGTATAATACAGTAGATTATTACGGTATTTCAGTCTCGATAGTCACAGCACAGTGTTCTGTACTGGGTTGCATGTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAGCTATTCAATTGGGTAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTTCTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTTTTTGCCGATATCCTTAGCCATGTTTCGTATCGATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGCCGGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCAAGAAATTGCTTGGAATTTTTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTGTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCATAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGGGTCTGCTATTATAGGCAACGAAGCACCAAACAGTTGGATTCGAATAGATTGAAAAAACTCGTTCATCGTCTGACAAACCTNGGGGCGATTCTG]
[-] EMBL AL931520 [ATCAGCTTAAATAGGCCAACATACGCAATAGCTTAGCTTAAGGTTGGGCAGTATAATACAGTAGATTATTACGGTATTTCAGTCTCGATAGTCACAGCACAGTGTTCTGTACTGGGTTGCATGTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACTTGGAACGTTTGAGCTATTCAATTGGGTAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTTCTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTTTTTGCCGATATCCTTAGCCATGTTTCGTATCGATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGCCGGAAATTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCAAGAAATTGCTTGGAATTTTTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGTTAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTTTCAGCTGTTCGACATTGTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCTGCTCACTTTTGATTAGCATAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGGGTCTGCTATTATAGGCAACGAAGCACCAAACAGTTGGATTCGAATAGATTGAAAAAACTCGTTCATCGTCTGACAAACCTNGGGGCGATTCTG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7753#0 TTTTTTTTTTTAATTAACCTTCGGTAATTTATTCGATATAAAAACTGACCTCCATCGCCT 60
consensus_7753#1 ------------------------------------------------------------
consensus_7753#0 ATCATCAGTGATGATACATGGAGATTGGCAGGTAGAGGTCTTTAGAGGAGATTGCTGCGG 120
consensus_7753#1 ------------------------------------------------------------
consensus_7753#0 ATGAAGCTGTGGACTCCCTAGCTGTCAAATGAAGAGTTGTTTAAGTACACTTGACGGACG 180
consensus_7753#1 ------------------------------------------------------------
consensus_7753#0 GTCCTGTAGTAATTTACGAACTGGTAGTAGCGGCCATTCGAATACTCTGTGGATTCACCT 240
consensus_7753#1 ------------------------------------------------------------
consensus_7753#0 TCTGCAGCGGGATTCCAATCAAATAATTTATAATACGCATCCAATACTTTCATAGCGTTC 300
consensus_7753#1 ------------------------------------------------------------
consensus_7753#0 ATCTTATACACATTTTTCTACCACAAAATTTTGATACTACTAAAGCTGCCATTTTAACAG 360
consensus_7753#1 ------------------------------------------------------------
consensus_7753#0 CGGTCGATTGACTTTGTCTTCGATCAACTAAAA-AGGCCAACATACGCTAGAGCTTAGCT 419
consensus_7753#1 ----------------------ATCAGCTTAAATAGGCCAACATACGCAATAGCTTAGCT 38
**** ** *** ************** * *********
consensus_7753#0 TAAGGGTGGGGCAGAAAATACAGTAAATTATTACGGTATTTCAGTCTCGATAGTAACAGC 479
consensus_7753#1 TAAGGTTGGGCAGTATAATACAGTAGATTATTACGGTATTTCAGTCTCGATAGTCACAGC 98
***** **** * ********* **************************** *****
consensus_7753#0 ACAGTGTTCTGTACTGGGTTGCATCTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACT 539
consensus_7753#1 ACAGTGTTCTGTACTGGGTTGCATGTGTTGTTGAGGTTGTTTGTTTTGCTCTTCTAGACT 158
************************ ***********************************
consensus_7753#0 TGGAACGTTTGAACCATTCAATTGGGAAGAGCTACAGTTACTTTCAGTCTGGTCGTTGTT 599
consensus_7753#1 TGGAACGTTTGAGCTATTCAATTGGGTAGAGCTACAGTCACTTTCAGTCTGGTCGTTGTT 218
************ * *********** *********** *********************
consensus_7753#0 CTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTGTTTGCCGATATCCATAGC 659
consensus_7753#1 CTCATTCGCCCTTATACATTTCGAAGCAGCTGCTTTAATTTTTTTGCCGATATCCTTAGC 278
***************************************** ************* ****
consensus_7753#0 CAT-TTTCGTATCAATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGTCTGAAA 718
consensus_7753#1 CATGTTTCGTATCGATACCATTAGGATGATCCCATTCCAAGTACACTATGTGGCCGGAAA 338
*** ********* *************************************** * ****
consensus_7753#0 TTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAAACAGTCTGTCGTCGACCACCAGCA 778
consensus_7753#1 TTCGTGTGCCGTTAATTATTTTTTTCAAATCACCAGACAGTCTGTCGTCGACCACCAGCA 398
*********************************** ************************
consensus_7753#0 AGAAATTGTTTGGAAATTGTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGT 838
consensus_7753#1 AGAAATTGCTTGGAATTTTTTTCCAGTTTAGGAACGCTAGTAGCTCGGGCTTGTTGTTGT 458
******** ****** ** *****************************************
consensus_7753#0 TAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTT 898
consensus_7753#1 TAAAGGCCAAAGAGGAGATGATGAACACGACCAAGTGGTTGCTCTTAGCCGGTGGTATTT 518
************************************************************
consensus_7753#0 TCAGCTGTTCGACATTTTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCT 958
consensus_7753#1 TCAGCTGTTCGACATTGTTCACGAAGATTATATCGTTTAATTCCAGCCCGGTGGACTCCT 578
**************** *******************************************
consensus_7753#0 GCTCACTTTTGATTAGCGTAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGAGTCTG 1018
consensus_7753#1 GCTCACTTTTGATTAGCATAACTTGCCTTTCATCCGTCTTGGTGAAAACTATAGGGTCTG 638
***************** ************************************ *****
consensus_7753#0 CTATTATAGGCAAAGAAGAACTAAACAGTCGGGATCGAATAGATTGAAAAAACTCGTTCA 1078
consensus_7753#1 CTATTATAGGCAACGAAGCACCAAACAGTTGGATTCGAATAGATTGAAAAAACTCGTTCA 698
************* **** ** ******* ** **************************
consensus_7753#0 TCGTCTTGACGTTCTTTTTACTTTTAC- 1105
consensus_7753#1 TCGTCTGACAAACCTNGGGGCGATTCTG 726
****** ** * **
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||