These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_776#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 752 fasta sequence [CCGGACTTCTAGTGCGAGCGCCGCCCTTTTTTTTTTTTTTTCCTTTGATCATTATGATAACTACACTAAACCATAACGCACGCGTGCCTGTACGAGTTGTGTTGTCTGTGTGTTTTGTGTAAATCTAAAGGTTGATGGAACTTTTATTGCCTTTCTACCACACTAGCACGTGTTGCTCCACGCACGTATAAAAAACAGCATTTCCAGTTCCCTTTCCTAGCCTATGATTTTCATTCATTGCGAACATATTTGTGATTTCTATAAGTATTGTAAATGCTTTTGCCAGGAGATTGAAACACACTCCCCTCTTTTGCTTTCAACTTCGTTCAAGTAGCAACAACAAACCCTTACACACACACACACACACACACCGACGACTACAAGTGGCAGTTTGATGATCGTTCAGCATGCTCACGGTGATCACGTGTGAGAGAGGTTCACTGTTACGTATATGTTTTGATTGCAATCTTGTTGATATTGGAACGCGTGGTTTGATGATTCTATTATTATTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACGAAAAAAAGAGAGAGGGGGGGGGAGGGAGAACAAGAACAAAAACGCGCGCGCGCGCGCCAAAGGATCCCACTTTTAGAGCGAGAGATATACACATAAAAGGTCTTCTAAAGCCCCCCTGAGAGGGAGAAAGTGGGCACCGTTTCCAAAACTCTTGATTGGGAAACCCCCCTCTCTCCCGAGGGGG] [+] EMBL BM618078 [CCGGACTTCTAGTGCGAGCGCCGCCCTTTTTTTTTTTTTTTCCTTTGATCATTATGATAACTACACTAAACCATAACGCACGCGTGCCTGTACGAGTTGTGTTGTCTGTGTGTTTTGTGTAAATCTAAAGGTTGATGGAACTTTTATTGCCTTTCTACCACACTAGCACGTGTTGCTCCACGCACGTATAAAAAACAGCATTTCCAGTTCCCTTTCCTAGCCTATGATTTTCATTCATTGCGAACATATTTGTGATTTCTATAAGTATTGTAAATGCTTTTGCCAGGAGATTGAAACACACTCCCCTCTTTTGCTTTCAACTTCGTTCAAGTAGCAACAACAAACCCTTACACACACACACACACACACACCGACGACTACAAGTGGCAGTTTGATGATCGTTCAGCATGCTCACGGTGATCACGTGTGAGAGAGGTTCACTGTTACGTATATGTTTTGATTGCAATCTTGTTGATATTGGAACGCGTGGTTTGATGATTCTATTATTATTCTATCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACGAAAAAAAGAGAGAGGGGGGGGGAGGGAGAACAAGAACAAAAACGCGCGCGCGCGCGCCAAAGGATCCCACTTTTAGAGCGAGAGATATACACATAAAAGGTCTTCTAAAGCCCCCCTGAGAGGGAGAAAGTGGGCACCGTTTCCAAAACTCTTGATTGGGAAACCCCCCTCTCTCCCGAGGGGG] consensusID : consensus_776#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 659 fasta sequence [TGTGTCTACAATCTGTTACTAGCTATGAAACGGAGCTGGCGGAGGGTTACGACCGAACTGTTGCTAAAAACGTTCATAACGAAACGGGATGATCATTCTTCGCATTGGCAACACAGGCTGCTTGCTTACTCGGCAGCTACAAAAGGGGGGAAAGAAAACCGGGCATTTTGCGAGGAACGATGGATATCATTCCATCCTAAACACTACTACTTTTCCTACTCATAATCACTGCGCTATTTGGGATGGGGGGTTGTTTCCGCACACAACCGCACCATGATCACCTTTTGTCGTTTCTCTGAGCACTATATGTTGGGTACGCGTATGATCGTTTTTTTTCCTTTTTTTTTTTCTTCCTTTGATCATTATGATAACTACACTAAACCATAACGCACGCGTGCCTGTACGAGTTGTGTTGTCTGTGTGTTTTGTGTAAACCTAAAGGTTGATGGAACTTTTATTGCCTTTCTACCACACTAGCACGTGTTGCTCCACGTGCGTATAAAAAACAGCATTTCCAGTTCCTTTTCCTAGCTTATGATTTTCATTCATTGCGAACATATTTGTGATTTCTATAAGTATTGTAAATGCTTTTGCCAGGAGATTGAAACACACCCCCCTCTTTTGCTTTCAACTTCATTCAAGTAGCAACAACAAACCGG] [-] EMBL BM648059 [TGTGTCTACAATCTGTTACTAGCTATGAAACGGAGCTGGCGGAGGGTTACGACCGAACTGTTGCTAAAAACGTTCATAACGAAACGGGATGATCATTCTTCGCATTGGCAACACAGGCTGCTTGCTTACTCGGCAGCTACAAAAGGGGGGAAAGAAAACCGGGCATTTTGCGAGGAACGATGGATATCATTCCATCCTAAACACTACTACTTTTCCTACTCATAATCACTGCGCTATTTGGGATGGGGGGTTGTTTCCGCACACAACCGCACCATGATCACCTTTTGTCGTTTCTCTGAGCACTATATGTTGGGTACGCGTATGATCGTTTTTTTTCCTTTTTTTTTTTCTTCCTTTGATCATTATGATAACTACACTAAACCATAACGCACGCGTGCCTGTACGAGTTGTGTTGTCTGTGTGTTTTGTGTAAACCTAAAGGTTGATGGAACTTTTATTGCCTTTCTACCACACTAGCACGTGTTGCTCCACGTGCGTATAAAAAACAGCATTTCCAGTTCCTTTTCCTAGCTTATGATTTTCATTCATTGCGAACATATTTGTGATTTCTATAAGTATTGTAAATGCTTTTGCCAGGAGATTGAAACACACCCCCCTCTTTTGCTTTCAACTTCATTCAAGTAGCAACAACAAACCGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_776#0 ------------------------------------------------------------ consensus_776#1 TGTGTCTACAATCTGTTACTAGCTATGAAACGGAGCTGGCGGAGGGTTACGACCGAACTG 60 consensus_776#0 ------------------------------------------------------------ consensus_776#1 TTGCTAAAAACGTTCATAACGAAACGGGATGATCATTCTTCGCATTGGCAACACAGGCTG 120 consensus_776#0 ------------------------------------------------------------ consensus_776#1 CTTGCTTACTCGGCAGCTACAAAAGGGGGGAAAGAAAACCGGGCATTTTGCGAGGAACGA 180 consensus_776#0 ------------------------------------------------------------ consensus_776#1 TGGATATCATTCCATCCTAAACACTACTACTTTTCCTACTCATAATCACTGCGCTATTTG 240 consensus_776#0 ------------------------------------------------------------ consensus_776#1 GGATGGGGGGTTGTTTCCGCACACAACCGCACCATGATCACCTTTTGTCGTTTCTCTGAG 300 consensus_776#0 --------CCGGACTTCTAGTGCGAGCGCCGCCCTT---TTTTTTTTTTTTTCCTTTGAT 49 consensus_776#1 CACTATATGTTGGGTACGCGTATGATCGTTTTTTTTCCTTTTTTTTTTTCTTCCTTTGAT 360 * * * ** ** ** ** ********** ********** consensus_776#0 CATTATGATAACTACACTAAACCATAACGCACGCGTGCCTGTACGAGTTGTGTTGTCTGT 109 consensus_776#1 CATTATGATAACTACACTAAACCATAACGCACGCGTGCCTGTACGAGTTGTGTTGTCTGT 420 ************************************************************ consensus_776#0 GTGTTTTGTGTAAATCTAAAGGTTGATGGAACTTTTATTGCCTTTCTACCACACTAGCAC 169 consensus_776#1 GTGTTTTGTGTAAACCTAAAGGTTGATGGAACTTTTATTGCCTTTCTACCACACTAGCAC 480 ************** ********************************************* consensus_776#0 GTGTTGCTCCACGCACGTATAAAAAACAGCATTTCCAGTTCCCTTTCCTAGCCTATGATT 229 consensus_776#1 GTGTTGCTCCACGTGCGTATAAAAAACAGCATTTCCAGTTCCTTTTCCTAGCTTATGATT 540 ************* *************************** ********* ******* consensus_776#0 TTCATTCATTGCGAACATATTTGTGATTTCTATAAGTATTGTAAATGCTTTTGCCAGGAG 289 consensus_776#1 TTCATTCATTGCGAACATATTTGTGATTTCTATAAGTATTGTAAATGCTTTTGCCAGGAG 600 ************************************************************ consensus_776#0 ATTGAAACACACTCCCCTCTTTTGCTTTCAACTTCGTTCAAGTAGCAACAACAAACCCTT 349 consensus_776#1 ATTGAAACACACCCCCCTCTTTTGCTTTCAACTTCATTCAAGTAGCAACAACAAACCGG- 659 ************ ********************** ********************* consensus_776#0 ACACACACACACACACACACACCGACGACTACAAGTGGCAGTTTGATGATCGTTCAGCAT 409 consensus_776#1 ------------------------------------------------------------ consensus_776#0 GCTCACGGTGATCACGTGTGAGAGAGGTTCACTGTTACGTATATGTTTTGATTGCAATCT 469 consensus_776#1 ------------------------------------------------------------ consensus_776#0 TGTTGATATTGGAACGCGTGGTTTGATGATTCTATTATTATTCTATCTCTCTCTCTCTCT 529 consensus_776#1 ------------------------------------------------------------ consensus_776#0 CTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTCTACGAAAAAAAGAGAGAGGGGGGGG 589 consensus_776#1 ------------------------------------------------------------ consensus_776#0 GAGGGAGAACAAGAACAAAAACGCGCGCGCGCGCGCCAAAGGATCCCACTTTTAGAGCGA 649 consensus_776#1 ------------------------------------------------------------ consensus_776#0 GAGATATACACATAAAAGGTCTTCTAAAGCCCCCCTGAGAGGGAGAAAGTGGGCACCGTT 709 consensus_776#1 ------------------------------------------------------------ consensus_776#0 TCCAAAACTCTTGATTGGGAAACCCCCCTCTCTCCCGAGGGGG 752 consensus_776#1 ------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||