These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7761#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 797 fasta sequence [CCGTTCTATTGACGTGTCGGTAGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA-GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTG] [+] EMBL BM650065 [CCGTTCTATTGACGTGTCGGTAGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTA ] [+] EMBL BM634475 [ ccgGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAG ] [+] EMBL BM606353 [ cCGTTTCTCGA TTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGCTTAAAATGTTTAACCCTGCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGGCTCCGAAGGACGTATTTCGTTCACCTCCCATATACCGGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGA ] [+] EMBL BM606340 [ cCGTTTCTCGA TTTTTTTGTTGGTAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGCTTAAAATGTTTAACCCTGCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACCTCCCATATACCGGGAGAACACGTGCTGTGTATGTACTCGAA ] [+] EMBL BM578952 [ ccgAAAATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGT ] [+] EMBL BM602264 [ ccgGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACA GCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTG] consensusID : consensus_7761#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 660 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCT] [+] EMBL BM644146 [CCGCCCACGCGTCCGCCCACGCGTCCGAAATGTTTAACCCTTCGTTATTTGTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGTGAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAACTACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATTGGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCT] consensusID : consensus_7761#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 524 fasta sequence [CCGCGGACGCGTGGGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTGAAAATAAATTAAAACAACATTG] [+] EMBL BM610681 [CCGCGGACGCGTGGGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGCTCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTACTCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTCGGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAGCTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAGAGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGGTGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTCAAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTATGTCACAATCTTTTTGTGAAAATAAATTAAAACAACATTG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7761#0 CCGTTCTATTGACGTGTCGGTAGAAAATTGCTTCGTTTCTCGATTTTTTTTTGTTGGTAA 60 consensus_7761#1 ------------------------------------------------------------ consensus_7761#2 ------------------------------------------------------------ consensus_7761#0 AATTGGTATTCTACATTGCTGGCTTCTATCGTGGTTAAAATGTTTAACCCTTCGTTATTT 120 consensus_7761#1 ----------CCGCCCACGCGTCCGCCCACGCGTCCGAAATGTTTAACCCTTCGTTATTT 50 consensus_7761#2 ------------------------------------------------------------ consensus_7761#0 GTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGT 180 consensus_7761#1 GTGGTGTTAGCCACGCTGCTCATTGTTCCTCTCTCGAATGGATTGTACTTTCACATCGGT 110 consensus_7761#2 ------------------------------------------------------------ consensus_7761#0 GAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAAC 240 consensus_7761#1 GAAACCGAACGCAAATGTTTCATCGAAGAAATACCGGATGAAACCACCGTAGTAGCTAAC 170 consensus_7761#2 ------------------------------------------------------------ consensus_7761#0 TACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATT 300 consensus_7761#1 TACAAGGTGGAACTGTATGATCCACGGTCCGGTGGATTCATGCCATCATCGCCCGGTATT 230 consensus_7761#2 -------------------------------------------------------CCGCG 5 consensus_7761#0 GGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGC 360 consensus_7761#1 GGAATGCACGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGC 290 consensus_7761#2 GACGCGTGGGTCGAAATCAAGGATCCCGACGACAAGACGATCCTTTCCCGTGTTTACAGC 65 * * *************************************************** consensus_7761#0 TCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTAC 420 consensus_7761#1 TCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTAC 350 consensus_7761#2 TCCGAAGGACGTATTTCGTTCACATCCCATATACCTGGAGAACACGTGCTGTGTATGTAC 125 ************************************************************ consensus_7761#0 TCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTC 480 consensus_7761#1 TCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTC 410 consensus_7761#2 TCGAACAGCACCGCCTGGTTCAGTGGATCGCAGCTCCGAGTGCACCTCGATATTCAGGTC 185 ************************************************************ consensus_7761#0 GGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAG 540 consensus_7761#1 GGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAG 470 consensus_7761#2 GGAGAGCACACGATCGATTACGCTAATGTGGCACAGAAGGAAAAGCTAACCGAATTGCAG 245 ************************************************************ consensus_7761#0 CTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAG 600 consensus_7761#1 CTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAG 530 consensus_7761#2 CTGCGCATTCGTCAACTCCTCGACCAGGTGGACCAAATCACAAAGGAGCAGAACTACCAG 305 ************************************************************ consensus_7761#0 AGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGG 660 consensus_7761#1 AGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGG 590 consensus_7761#2 AGATACCGTGAAGAACGCTTCCGACAAACCAGCGACAGTACCAACCAGCGTGTCTTGTGG 365 ************************************************************ consensus_7761#0 TGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTC 720 consensus_7761#1 TGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTC 650 consensus_7761#2 TGGTCGGTTGCTCAAACCGTAGTGCTGCTGATAATGGGCGTGTGGCAGATGAGGCATCTC 425 ************************************************************ consensus_7761#0 AAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTAT 780 consensus_7761#1 AAGAGCTTCT-------------------------------------------------- 660 consensus_7761#2 AAGAGCTTCTTCGAAGCAAAGAAACTAGTTTAAACGAACGAATATCGTACGACAAGGTAT 485 ********** consensus_7761#0 GTCACAATCTTTTTGTG---------------------- 797 consensus_7761#1 --------------------------------------- consensus_7761#2 GTCACAATCTTTTTGTGAAAATAAATTAAAACAACATTG 524 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||