These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7767#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 718 fasta sequence [CCGCGGACGCGTCCGCCCACGCGTCCGCCCACGCGTCCG---AAAACAAGGTTGCTAGGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAACGGTCCCAGACCGACCTG-GAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAAGG-ACGTGCCGAA-GGCGGTCGAGATCCTGTCCGACATCATCCAGCACTCGAAGCTGGGCGAGGCGGAGATAGAGCGCGAGCGGGGCGTGATCCTGCGCGAGATGCAGGATGTCGAGAGCAACCTGCAAGAGGTGGTGTTTGACCATCTGCACGC] [+] EMBL BM614128 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCGTGGGAGAAAAACAAGGTTGCTAGGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAACGGTCCCAGACCGACCTG GAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAAGG ACGTGCCGAA GGCGGTCGAGATCCTG ] [+] EMBL BM624638 [ CCGCCCACGCGTCCGCCCACGCGTCCG CCCACGCGTCC GGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAGCGGTCCCAGACCGACCTG GAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAAGG ACGTGCCGAA GGCGGTCGAGATCCTGTCCGACATCATCCAGCACTCGAAGCTGGGCGAGGCGGAGATAGAGCGCGAGCGGGGCG ] [+] EMBL BM591250 [ CCGCCCACGCGTCCGCCCACGCGTCCGGA AAAACAAGGTTGCTAGGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGACAAGCGGTCCCAGACCGACCTGCGAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAAGGAACGTGCCGAA GGCGGTCGAGATCCTGTCCGACATCATCCAGCACTCGAAGCTGGGCGAGGCGGACATAGAGC ] [+] EMBL BM607235 [ CCGCCCACGCGTCCGCCCACGCGTCCG CCCACGCGT CCGGGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAGCGGTCCCAGACCGACCTG GAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAAGG ACGTGCCGAAGGGCGGTCGAGATCCTGTCCGACATCATCCAGCACTCGAAGCTGGGC ] [+] EMBL BM577092 [ CCGCCCACGCGTCCG AAACAAGGTTGCTAGGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAACGGTCCCAGACCGACCTG GAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAAGG ACGTGCCGAA GGCGGTCGAGATCCTGTCCGACATCATCCAGCACTCGAAGCTGGGCGAGGCGGAGATCGAGCGCGAGCGGGGCGTGATCCTGCGCGAGATGCAGGATGTCGAGAGCAACCTGCAAGAGGTGGTGTTTGACCATCTGCACGC] [+] EMBL BM613410 [ CCGCCCACGCGTCCGGA AAAACAAGGTTGCTAGGGGACGTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGCCGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCAATCAATGGCCTCGCTGCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCTGCTGTTCCGGCGCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCGAGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGGCAACCGTCGGGCTGTGGATCGATGCCGGCTCGCGCTACGAGAACGACAGCAACAACGGGGTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAACGGTCCCAGACCGACCTG GAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAGACCGTGTTCTACGCTAAGTGCCTGTCGAA ] consensusID : consensus_7767#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 645 fasta sequence [CCGCAGAACCGCGACTGAATCGGTTACAGGCGTATCGTAGCTGCTGGTCGAGCGCGTTTCATTACGCACTCCTCCAAACCTCCGCGGCCCTCCCCCACTAGAAACGTTGTGCTCTACGCCGTTGTGTGGTTCGGGGATCAGAGAGAGAGAGAGTGAGCGAGCGAGCGAGCGCTGGTGCTGGGAACGAGTTTGCTGCTGTTTGCGAGTGTGTGCATGGGTGTGTGAGCGTTCGCGCGCGTGTTTGTGGATAACCGAAAGCGGAAGCGGAAGCGAGAGAGCGACCGAGCGCGTGAAGTTTGGTGGCGAGCGAGAGAGCGAGAGCGGTGCATCGAGAAAGAAGAAGCAGTAGAGGGAGAGAGGAAAAAACAAGTGCTCGTCGTGTACCTTGTGCGGTGCTCGAAGGATCAAAGATCGATTGCCTGCCTGGCCCAGTAATACGGGCGTGTGTGTGTGGCCGTGTGTGAGAGAGTGTGTG-TGTGTGAGTGTTTGTGAAGAAAAGCTGCGAACCAGCACAGGTGCGATCGTCGCGCGCGCGTTCGACAGGACTGAACGGACCACTGCCAATTCAGAGTCAGCACAGCATTAGACAGAGTCAGCAGCAGCACCAGCAGCAGCCATGGCCGACAAAAAGGTAGCGGAACAGTA] [+] EMBL BM584659 [CCGCAGAACCGCGACTGAATCGGTTACAGGCGTATCGTAGCTGCTGGTCGAGCGCGTTTCATTACGCACTCCTCCAAACCTCCGCGGCCCTCCCCCACTAGAAACGTTGTGCTCTACGCCGTTGTGTGGTTCGGGGATCAGAGAGAGAGAGAGTGAGCGAGCGAGCGAGCGCTGGTGCTGGGAACGAGTTTGCTGCTGTTTGCGAGTGTGTGCATGGGTGTGTGAGCGTTCGCGCGCGTGTTTGTGGATAACCGAAAGCGGAAGCGGAAGCGAGAGAGCGACCGAGCGCGTGAAGTTTGGTGGCGAGCGAGAGAGCGAGAGCGGTGCATCGAGAAAGAAGAAGCAGTAGAGGGAGAGAGGAAAAAACAAGTGCTCGTCGTGTACCTTGTGCGGTGCTCGAAGGATCAAAGATCGATTGCCTGCCTGGCCCAGTAATACGGGCGTGTGTGTGTGGCCGTGTGTGAGAGAGTGTGTG TGTGTGAGTGTTTGTGAAGAAAAGCTGCGAACCAGCACAGGTGCGATCGTCGCGCG ] [+] EMBL BM593960 [ ccgGAATCGGTTACAGGCGTATCGTAGCTGCTGGTCGAGCGCGTTTCATTACGCACTCCTCCAAACCTCCGCCACCCTCCCCCACTAGAAACGTTGTGCTCTACGCCGTTGTGTGGTTCGGGGATCAGAGAGAGAGAGAGTGAGCGAGCGAGCGAGCGCTGGTGCTGGGAACGAGTTTGCTGCTGTTTGCGAGTGTGTGCATGGGTGTGTGAGCGTTCGCGCGCGTGTTTGTGGATAACCGAAAGCGGAAGCGGAAGCGAGAGAGCGACCGAGCGCGTGAAGTTTGGTGGCGAGCGAGAGAGCGAGAGCGGTGCATCGAGAAAGAAGAAGCAGTAGAGGGAGAGAGGAAAAAACAAGTGCTCGTCGTGTACCTTGTGCGGTGCTCGAAGGATCAAAGATCGATTGCCTGCCTGGCCCAGTAATACGGGCGTGTGTGTGTGGCCGTGTGTGAGAGAGTGTGTGTTGTGTGAGTGTTTGTGAAGAAAAGCTGCGAACCAGCACAGGTGCGATCGTCGCGCGCGCGTTCGACAGGACTGAACGGACCACTGCCAATTCAGAGTCAGCACAGCATTAGACAGAGTCAGCAGCAGCACCAGCAGCAGCCATGGCCGACAAAAAGGTAGCGGAACAGTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7767#0 CCGCGGACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGAAAACAAGGTTGCTAGGGGAC 60 consensus_7767#1 ----------------------------CCGCAGAACCGCGACTGAATCGGTTACAGG-C 31 ** * *** * * * ** ** * consensus_7767#0 GTGTTGCGCAAAACTCTGTCCGACCGTAAGCTCGGTATCCCTTCGATTCCCCAGATTTGC 120 consensus_7767#1 GTATCGT---AGCTGCTGGTCGAGCGCGT-TTCATTACGCACTC----CTCCAAACCTCC 83 ** * * * *** *** ** ** ** * ** * *** * * * consensus_7767#0 CGACGAATCCCGTACCCAATCAACTGTAACCCGTGCCGCTGCA--ATCAATGGCCTCGCT 178 consensus_7767#1 GCGGCCCTCCCCCACTAGAAACGTTGTGCTCTACGCCGTTGTGTGGTTCGGGGATCAGAG 143 **** ** * *** * **** ** * ** * consensus_7767#0 GCTGAAGTTTTCGGCTGGCCTGCGGGCGTACAGCCGCAGCCACCAGCT-GCTGTTCCGGC 237 consensus_7767#1 AGAGAGAGAGTGAGCGAGCGAGCGAGCGC-TGGTGCTGGGAACGAGTTTGCTGCTGTTTG 202 ** * ** ** *** *** * * ** ** * **** * consensus_7767#0 GCACTAAGGTTTCGAATGCGGCTGAATTCCGGGCCGCCCTGGTGAACGTCCCACCGACCG 297 consensus_7767#1 CGAGTGTGTGCATGGGTGTGTGAGCGTTCGCGCGCGTGTTTGTGGATAACCGAAAG-CGG 261 * * * * ** * * *** * ** * *** * ** * * * * consensus_7767#0 AGGTTACCACGCTGGACAGTGGGCTGCGTGTGGCGAGCGAAGATTCCGGCTCGCAGACGG 357 consensus_7767#1 AAGCGG--AAGCGAGAGAGCGACCGA------GCGCGTGAAGTTT---GGTGGCGAGCGA 310 * * * ** ** ** * * *** * **** ** * * ** ** consensus_7767#0 CAACCGTCGGGCTGTGGATCGATGCCGGCTC-GCGCTACGAGAACGACAGCAACAACGGG 416 consensus_7767#1 GAGAGCGAGAGCGGTGCATCGAGAAAGAAGAAGCAGTAGAGGGAGAGAGGAAAAAACAAG 370 * * ** *** ***** * ** ** * * * ** *** * consensus_7767#0 GTCGCCCACTTCCTCGAGCACATGGCGTTCAAGGGTACGGCCAAACGGTCCCAGACCGAC 476 consensus_7767#1 TGC-------TCGTCGTGTACCTTGTGC-----GGTGC--TCGAAGGATCAAAGATCGAT 416 * ** *** * ** * * * *** * * ** * ** *** *** consensus_7767#0 CTGGAGCTCGAGGTCGAAAACATGGGCGCCCACCTGAACGCGTACACGTCCCGGGAGCAG 536 consensus_7767#1 TGCCTGCCTG-GCCCAGTAATACGGGCG------TGTGTGTGTGGCCGTGT-GTGAG-AG 467 ** * * * ** * ***** ** * ** *** * *** ** consensus_7767#0 ACCGTGTTCTACGCTAAGTGCCTGTCGAAGGACGTGCCGAAGGCGGTCGAGATCCTGTCC 596 consensus_7767#1 AGTGTGTG-TGTG-TGAGTGTTTGTGAAGAAAAGCTGCGAAC-CAGCACAGGTGCGATCG 524 * **** * * * **** *** * * * **** * * ** * * ** consensus_7767#0 GACATCATCCAGCACTCGAAGCTGGGCGAGGCGGAGATAG---AGCGCGAGCGGGGCGTG 653 consensus_7767#1 TCGCGCGCGCGTTCGACAGGACTGAACGGACCACTGCCAATTCAGAGTCAGCACAGCATT 584 * * * *** ** * * * ** * *** ** * consensus_7767#0 ATCCTGCGCGAGATGCAGGATGTCGAGAGCAACC-TGCAAGAGGTGGTGTTTGACCATCT 712 consensus_7767#1 AGACAGAGTCAGCAGCAGCA--CCAGCAGCAGCCATGGCCGACAAAAAGGTAGCGGAACA 642 * * * * ** **** * * **** ** ** ** * * * * * consensus_7767#0 GCACGC 718 consensus_7767#1 GTA--- 645 * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||