These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7769#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 924 fasta sequence [GACGAAAAGACGACGGTTGATGGAGCGGAACACGAACCGGAAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTAATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTGTAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAATAAAAAAAAAAAAAAAAAAAAAAGGCCCC] [+] EMBL CNS09OOO [GACGAAAAGACGACGGTTGATGGAGCGGAACACGAACCGGAAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTAATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTGTAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAATAAAAAAAAAAAAAAAAAAAAAAGGCCCC] [+] EMBL CNS09BO8 [ AGCGGAACA GAACCGGAAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTTATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTATAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAG ] [+] EMBL CNS09RBZ [ AAGTGGTACTGCGCAAATCGAAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTAATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGCATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTATAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGAT ] [-] EMBL CNS09OOP [ TGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAGCACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTTTCTTGGGACGGCCTGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGCAGTAAGGCGACTACAACTGGTGCGTGGTGACTCCCCGAGGATATCCCCCCAACGCGTGTAGATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAAAGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAGCTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGG GGTTGGAAAT ] [-] EMBL CNS09BO9 [ GACCCCGAGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGGAAATACACCCTCCCGTGGACCCGTCCAAGTTACTG ] [-] EMBL CNS09RC0 [ tTTTTTTTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGTATGTTTTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTCCCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACTCCATGATGTCTACTTTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTTAAAAACAACTCACCACGACCGTT ] consensusID : consensus_7769#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 686 fasta sequence [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGATTTATTGTTGCACGGGTCAGCCTGTGTTGGTGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGTGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGCATGTTCTTTACCGTAAGAAGAAGGTGTTTTACGAGGCGAATATACCCTCCCGTCGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGCGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGTCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCG] [+] EMBL BM602948 [CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGATTTATTGTTGCACGGGTCAGCCTGTGTTGGTGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGTGATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGGTGTTGCAATGCATGTTCTTTACCGTAAGAAGAAGGTGTTTTACGAGGCGAATATACCCTCCCGTCGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGCGCACTCCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGTCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCG] consensusID : consensus_7769#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 457 fasta sequence [CCGCTGGTCAATAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGCCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCGACGGCGGCAGCGCCGCCAGCATTCGGTGCACGCCCTACCAGCGTTCCGGCGCCCCAATTTTCTAGTCCCGCTCCGGCAATGT] [+] EMBL BM604872 [CCGCTGGTCAATAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAAATTGGAAAAATCGTGTCGAACTCTCCGATGCGACCAACTTCACCGTTGCGGGCCGGCTGCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCGGACACGAAGCAATCGCCCGCGATGAACGTGTTCCGCAGCGTTAACCCACCGCAGCTCGGCCTGTCCAAGAGCCCCTCGATGATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCACCGACGGCGGCAGCGCCGCCAGCATTCGGTGCACGCCCTACCAGCGTTCCGGCGCCCCAATTTTCTAGTCCCGCTCCGGCAATGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7769#1 ------------CCACGCGTCCGCCCACGCGTCCGCCCACGCGTCCGGGATTTATTGTTG 48 consensus_7769#2 ------------------------------------------------------------ consensus_7769#0 GACGAAAAGACGACGGTTGATGGAGCGGAACACGAACCGGAAGTGGTACTGCGCAAATCG 60 consensus_7769#1 CACGGGTCAGCCTGTGTTGGTGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGT 108 consensus_7769#2 ------------------------------------------------------------ consensus_7769#0 AAACCTACCGCGACGCCCGCCACCTATCGCAATGCCGTCGATAACATTGAGCAAATCCTA 120 consensus_7769#1 GATGAAGCATTATTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAG 168 consensus_7769#2 ------------------------------------------------------------ consensus_7769#0 ATTGCGGAGAACCTATCGAAAGACTACTGGAAGTACTCCATCTCGAACCTGCTGGACAGC 180 consensus_7769#1 TTAGTATCAAGGTGTTGCAATGCATGTTCTTTACCGTAAGAAGAAGGTGTTTTACGAGGC 228 consensus_7769#2 ------------------------------------------------------------ consensus_7769#0 ATGGAGGAGGACGGTGGTATCGTGTCGCTGCAGTGATGATGTGTGCAGCTCCCAGTAAAG 240 consensus_7769#1 GAATATACCCTCCCGTCGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAA 288 consensus_7769#2 ------------------------------------------------------------ consensus_7769#0 CACCAAAGCCCCAACCTCCTTCGCCCTTGTACCTATAAACTGGCTTATCTTGGGACGGCC 300 consensus_7769#1 TAGGAGCGCACTCCATGATGTCTACTCTGAAGCA-----GAATGCACTCATCGTTGCCA- 342 consensus_7769#2 -----------------------CCGCTGGTCAA-----TAATGCACTCATCGTTGCCA- 31 consensus_7769#0 TGCAAAGGTGCTTAAAAAGTCACCCGAGGAGAGAGGGCTTAACAGATAGACTGATAGCGC 360 * * * ** * * * * * consensus_7769#1 AGTCCCACGAAAGCC--CAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGA 400 consensus_7769#2 AGTCCCACGAAAGCC--CAGTGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGA 89 consensus_7769#0 AGTAAGGCGACTACCACTGGTGCGTGGTGACTCCCCGAGGATATCCACCCAACGCGTGTA 420 *** *** ** *** **** ** * * ** * * * * * consensus_7769#1 CCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAA-ATT 459 consensus_7769#2 CCTGGAGGGTGGAAACATTTCCGATCGGTTGGGCAAGATCAAGACGTCGTCGGAAA-ATT 148 consensus_7769#0 GATACTGTGTCAAGGCAGCTACGAGCTTTAGTGTACAATCGAACAAACAAAGGAAGCAAA 480 * * ** * ** * *** * * * * * *** * * **** * consensus_7769#1 GGAAAAATCGTGTCGAACTCTCCGA-----TGCGACCAACTTCACCGTTGC--GGGCCGG 512 consensus_7769#2 GGAAAAATCGTGTCGAACTCTCCGA-----TGCGACCAACTTCACCGTTGC--GGGCCGG 201 consensus_7769#0 AGAAGTAACGAGTCAATTCCCGCTAAAGGCTGTGATTGGATTTATTGTTGCACGGGTCAG 540 *** * ** *** * * * * ** ** ** * ***** *** * * consensus_7769#1 CT---GCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCG-GACACGAAGCAATC 568 consensus_7769#2 CT---GCCCGCAACCAAATCGCCCAAGCTACCGTTCATCAAGTCG-GACACGAAGCAATC 257 consensus_7769#0 CTTGTGTTGGTGTGTGTGTGTGTAACGCAACACACTGTACGACCGCGAGATGAAGCATTA 600 ** * * * * ** ** * ** ** * ****** * consensus_7769#1 GCCCGCGATGAACGTGTTC--CGCAGCGTTAACCCACCGCAGCTC-GGCCTGTCCAAGAG 625 consensus_7769#2 GCCCGCGATGAACGTGTTC--CGCAGCGTTAACCCACCGCAGCTC-GGCCTGTCCAAGAG 314 consensus_7769#0 TTATATTTAGGGTGTTATAAGTGCAAGAGTGACGTAAATCAATTCCAGTTAGTATCAAGG 660 * ** * *** * ** * ** ** * ** * * consensus_7769#1 TCCCTCGATG-ATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCAC 684 consensus_7769#2 CCCCTCGATG-ATGGTGTCCTCCGTGGTCACTTCCTCGACCGTTTACGGACAGCAGCCAC 373 consensus_7769#0 TGTTGCAATGTATGTTCTTTACTGTAAGAAGAAGGTGTTTTACGAGGCAAATACACCCTC 720 * *** *** * * * ** * * * ** ** * consensus_7769#1 CG---------------------------------------------------------- 686 consensus_7769#2 CGACGGCGGCAGCGCCGCCAGCATTCGGTGCACGCCCTACCAGCGTTCCGGCGCCCCAAT 433 consensus_7769#0 CCGTGGACCCGTCCAAGTTACTGCTACGTTTACTTTATCGAGGTGTAATAGGAGTGCACT 780 * consensus_7769#1 ------------------------------------------------------------ consensus_7769#2 TTTCTAGTCCCGCTCCG--GCAATGT---------------------------------- 457 consensus_7769#0 CCATGATGTCTACTCTGAAGCAGAATGCACTCATCGTTGCCAAGTCCCACGAAAGCCCAG 840 consensus_7769#1 ------------------------------------------------------------ consensus_7769#2 ------------------------------------------------------------ consensus_7769#0 TGAAAAACAACTCACCACGACCGTTCAGTCGGCCGGCGGACCTGGAGGGTGGAAATAAAA 900 consensus_7769#1 ------------------------ consensus_7769#2 ------------------------ consensus_7769#0 AAAAAAAAAAAAAAAAAAGGCCCC 924 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||