These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7771#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1542 fasta sequence [CGAGGTTNAAATCAAATCGCAAAGTANTTCATGTTATGTAAAAAAAAATAAAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACCAGCAGGTTAGCGCAGGTAAACAAAGTTAACGCTAACACTGTATTTAATAAGCGCGTCTGTAGCACAACTATATAACTCTTACTGTAACGGAACAGGAACAGCAGGAAG-TAAGCAGTTCGCCTGAG-GTGGGTAGGAA-AAGCTA-NCAG-TGAAAGAAAA-TCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTT-ATTGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG-AAAAGAAAGCGCTACAATCATGCAA-ATGTAACATG-AAACAGATATGCAA-TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT-GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGGACAATTCAATCGGAATCTATTGCACACGTTTTGAGGAAGCGCAAAGCAAACATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGTGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACTGTAGAGAGCGCGAACGGAACCAAACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTTAAACAAGCGCAATGAAAGATATCTTGTGAAAACTACTGCTTGCAACAAATTGAACTAGAAAGAAATTGTTTAAATTTAATACATCTCGCGACGAAGGTGAAGTAGGAGCGGCAACAGCTGGAGCAGCATCGGCAGCATCAAAATATACAAATAATTGAAAACTAGTAGCACACACAAACACACACGAAGCTATCGTGAGTAAACTGTAAATATGATGTTTGCGTAAAAGTAATGCGAAAGTCTCACATATGCAACAGCCATTCGGATGGATGTTTAGCGGCATTCGTCAGAGCTCTAGCATACGTTGCGCACCACGCAGTGATCATGGTAGCAGCAAGATCAGCAGAAACAATAATTCAAACTACTAACGACCCTTCTCCCCTGCAGTACCAGTCTGGTAAGCGTAAAGGATAACCATAATATCAACCCATTAATAACAGCCAAAACAGCAAACAATGATGAGGTTGAGATTGTTTGAAATATCGTCTTTAACTGCTGCAAACCCCTAGAGGTAGGCTAGTAAGGGTAAGGC] [+] EMBL AL934529 [CGAGGTTNAAATCAAATCGCAAAGTANTTCATGTTATGTAAAAAAAAATAAAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACCAGCAGGTTAGCGCAGGTAAACAAAGTTAACGCTAACACTGTATTTAATAAGCGCGTCTGTAGCACAACTATATAACTCTTACTGTAACGGAACAGGAACAGCAGGAAGCTAAGCAGTTCGCCTGAGCGTGGGTAGGAACAAGCTACNCAGCTGAAAGAAAACTCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTTCATAGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAGCAAAAGAAAGCGCTACAATCATGCAACATGTANCATGCAAACAGATATGCAACTGCTGTCTATTCTGGGAGGAAATGGAGGTNGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTTCGTCACTTACTTCAA ] [+] EMBL BX617797 [ GCAGGAAG TAAGCAGTTCGCCTGAG GTGGGTAGGAA AAGCTA ACAG TGAAAGAAAA TCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTT ATTGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG AAAAGAAAGCGCTACAATCATGCAA ATGTAACATG AAACAGATATGCAA TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGGACAATTCAATCGGAATCTATTGCACACGTTTTGAGGAAGCGCAAAGCAAACATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGTGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTA ] [+] EMBL BX615021 [ AAA TCAAAGCTGAAACGGAAGTCGCTACGATGTTACAATATAGTTCGTT ATTGTTAGCATGTGACCAGCGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG AAAAGAAAGCGCTACAATCATGCAA ATGTAACATG AAACAGATATGCAA TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGACGCGCTGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTACGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGAACAATTCAATCGGCATCTATTGCACACGTTTTGAGGAAGCGTAAAGCAACCATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGAGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACTGTAGAGA ] [+] EMBL BX609310 [ A TCAAAGCTGAAGCGGAAGTCGCTACGATGTTACAATATAGATCGTT ATTGTTAGCATGTGACCGGGGGTAGGCGAAGGATGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAG AAAAGAAAGCGCTACAATCATGCAA ATGTAACATG AAACAGATATGCAA TGCTGTTTATTCTGGGAGGAAATGGAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTT GTTACTTACTTCAATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAATCTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGCTTCCGTCTTTGCTGAATCTAAAAATTGGACAATTCAATCGGAATCTATTGCACACGTTTTGAGGAAGCGCAAAGCAAACATGAGCATTATAATTCGGCTAAAAGGCATAACGTGAAAAGTGTTGTGTTTATCTCAAACAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACTGTAGAGAGCGCGAACGGAACCAAACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTTAA ] [+] EMBL BX613049 [ CAACGTTTATCAACCGAGAAGAACAGCCCAGTGAAGAATTGAAAGTTATGGAATAATTAAACAAATAAAAGGATAAACATGCGGACGGTAGAGAGCGCGAACGGAACCAAACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTGGTAAGTGAAGCGATACTTAAACAAG ] [+] EMBL BX615980 [ cACGTGAAGCACATACCATACCAAACAGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTTAAACAAGCGCAATGAAAGATATCTTGTGAAAACTACTGCTTGCAACAAATTGAACTAGAAAGAAATTGTTTAAATTTAATACATCTCGCGACGAAGGTGAAGTAGGAGCGGCAACAGCTGGAGCAGCATCGGCAGCATCAAAATATACAAATAATTGAAAACTAGTAGCACACACAAACACACACGAAGCTATCGTGAGTAAACTGTAAATATGATGTTTGCGTAAAAGTAATGCGAAAGTCTCACATATGCAACAGCCATTCGGATGGATGTTTAGCGGCATTCGTCAGAGCTCTAGCATACGTTGCGCACCACGCAGTGATCATGGTAGCAGCAAGATCAGCAGAAACAATAATTCAAACTACTAACGACCCTTCTCCCCTGCAGTACCAGTCTGGTAAGCGTAAAGGATAACCATAATATCAACCCATTAATAACAGCCAAAACAGCAAACAATGATGAGGTTGAGATTGTTTGAAATATCGTCTTTAACTGCTGCAAACCCCTAGAGGTAGGCTAGTAAGGGTAAGGC] consensusID : consensus_7771#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 752 fasta sequence [AATCGCCCCGAGGTTAATTACCACGTTCTGCATTCCATCTGCGAAAAATGGAAAAAGAAACCTGGGCAAGAAATATCTAGAGAGAATTAGAACATGAGAAAGCTTCAAAAGTAAAATTACAATCTAAACTTAAAACAAACACTTGCGCCACCTTCACCGTCATGCTTCTCTTAAGTACAGTTTCACGTAATGTCTAGCTACAGCGGGGAAAATAGTAATGCGTTAAGCCAGCAACACAAAAGATAAACTAAGTTAAACGATAACATTATGGCANACCACACNCACAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATGGTGCTGCGGTAGAAAGACAGAAGCGGCACAGCAAGCAGAAGAGCTAAAAGAAATATTCAAACGATACGCAATGCGTGAATCAAATCGCAAAGTAGTTTAGTGTTCATGTACACACAACATAATCAACAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAGGTTAGGCAGGTAAACAAAGTTAAGTAAATGTNTTTAATAAGCGCGCTCTGTAGCACANTATATAACTTTACTGTAACGGAACAGGAAAGCAGGAAGTAGCAGTTCGCCTGAGTGGGTAGGAAAAGCTAACAGTGCANAGAAAATCAAGCGTGANACGGNA] [+] EMBL AL929799 [AATCGCCCCGAGGTTAATTACCACGTTCTGCATTCCATCTGCGAAAAATGGAAAAAGAAACCTGGGCAAGAAATATCTAGAGAGAATTAGAACATGAGAAAGCTTCAAAAGTAAAATTACAATCTAAACTTAAAACAAACACTTGCGCCACCTTCACCGTCATGCTTCTCTTAAGTACAGTTTCACGTAATGTCTAGCTACAGCGGGGAAAATAGTAATGCGTTAAGCCAGCAACACAAAAGATAAACTAAGTTAAACGATAACATTATGGCANACCACACNCACAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATGGTGCTGCGGTAGAAAGACAGAAGCGGCACAGCAAGCAGAAGAGCTAAAAGAAATATTCAAACGATACGCAATGCGTGAATCAAATCGCAAAGTAGTTTAGTGTTCATGTACACACAACATAATCAACAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAGGTTAGGCAGGTAAACAAAGTTAAGTAAATGTNTTTAATAAGCGCGCTCTGTAGCACANTATATAACTTTACTGTAACGGAACAGGAAAGCAGGAAGTAGCAGTTCGCCTGAGTGGGTAGGAAAAGCTAACAGTGCANAGAAAATCAAGCGTGANACGGNA] [+] EMBL AL933485 [ ccgaggcAAAGAT AACTAAGTT AACGATAA ATTATGGCA A AAA AAAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATGGTGCTGCGGTAGAAAGACAGAAGCGG A AG AAG AGAAGAGCTAAAAGAAATATTCAAACGATACGCAATGCGTGAATCAAATCGCAAAGTAGTTTAGTGTT ATGTA A AAAAAATAAT AA AAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCGTATGGATGAGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAGGTTAGGCAGGTAAACAAAGTTAAGTAAATGTATTTAATAAGCGCG TCTGTAGCACAa ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7771#0 CGAGGTTNAAATCAAATCGCAAAGTANTTCATGTTATGTAAAAAAAAATAAAAACAAACA 60 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 AACAAATAGATCTAACGCTATCACGACAGACACACACACAACAGCATACCCGTATGGATG 120 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 AGCAAATACAAAACAAAGAAACACTGTAAACAAATAAAAACAAAACCCATGCATTTGCAC 180 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 GAACCAGCAGGTTAGCGCAGGTAAACAAAGTTAACGCTAACACTGTATTTAATAAGCGCG 240 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 TCTGTAGCACAACTATATAACTCTTACTGTAACGGAACAGGAACAGCAGGAAGTAAGCAG 300 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 TTCGCCTGAGGTGGGTAGGAAAAGCTANCAGTGAAAGAAAATCAAAGCTGAAGCGGAAGT 360 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 CGCTACGATGTTACAATATAGATCGTTATTGTTAGCATGTGACCGGGGGTAGGCGAAGGA 420 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 TGCGTTACGATTATCTGGGTACAGCTATCGCAATCACTATCCACGAGAAAAGAAAGCGCT 480 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 ACAATCATGCAAATGTAACATGAAACAGATATGCAATGCTGTTTATTCTGGGAGGAAATG 540 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 GAGGTTGCGTGTTCGATACGGATCACGATGGCACGCGCTCGTGTGTTGTTACTTACTTCA 600 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 ATTGCAATGCGTACAATCTTCTCGCACTGCGTGAGGCGCAGTACGTTCCTGTGCGTTAAT 660 consensus_7771#1 ------------------------------------------------------------ consensus_7771#0 CTCTCGTTAGTCTCTTGCGCCGTTTTCGTCCCTGTTCTGC-TTCCGTCTTTGCTGAATCT 719 consensus_7771#1 --------AATCGCCC-CGAGGTTAATTACCACGTTCTGCATTCCATCTGCGAAAAATGG 51 * ** * ** *** ** ******* **** *** * *** consensus_7771#0 AAAAATTGGACAATTCAATCGGAATCTATTGCACAC---GTTTTGAGGAAGCG-CAAAGC 775 consensus_7771#1 AAAAAGAAACCTGGGCAAGAAATATCTAGAGAGAATTAGAACATGAGAAAGCTTCAAAAG 111 ***** * *** ***** * * **** **** **** consensus_7771#0 AAACATGAGCATTATAATTCGGCTAAAAGGCATAA--CGTGAAAAGTGTTGTGTTTATCT 833 consensus_7771#1 TAAAATTACAATCTAAACTTAAAACAAACACTTGCGCCACCTTCACCGTCATGCTTCTCT 171 ** ** * ** ** * *** * * * * ** ** ** *** consensus_7771#0 CAAACAACGTTTATCAACCGAGAAGAACAGCC-CAGTGAAGAATTGAAAGTTATGGAATA 892 consensus_7771#1 TAAGTACAGTT--TCA--CGTAATGTCTAGCTACAGCGGGGAA--AATAGTAATGCGTTA 225 ** * *** *** ** * * *** *** * *** * *** *** ** consensus_7771#0 ATTAAACAAATAAAAGGATAAAC-ATGCGGACTGTAGAGAGCGCGAACGGAACCAAACGT 951 consensus_7771#1 AGCCAGCAACACAAAAGATAAACTAAGTTAAACGATAACATTATGG--CANACCACACNC 283 * * *** *** ******* * * * * * * * **** ** consensus_7771#0 GAAGCACATACCATACCAAAC-AGAAATAAAATCATTCGTTTGTAAGTGAAGCGATACTT 1010 consensus_7771#1 ACAGAAACTATCATACAATACCAAGGAGAAGATCAAGCGCGCATG-GTGCTGCGGTAGAA 342 ** * ** ***** * ** * * ** **** ** * *** *** ** consensus_7771#0 AAACAAGCGCAATGAAAGATATCTTGTGAAAACTACTGCTTGCAACAAATTGAACTAGAA 1070 consensus_7771#1 AGACAGAAGCGGCACAGCAAGC---AGAAGAGCTAAAA-----GAAATATTCAAACGATA 394 * *** ** * * * * *** * * *** ** * consensus_7771#0 AGAAATTGTTTAAATTTAATACATCTCGCGACGAAGGTGAAGTAGGAGCGGCAACAGCTG 1130 consensus_7771#1 CGCAAT-GCGTGAATCAAA------TCGCAAAGTAG-TTTAGTGTTCATGTACACA---- 442 * *** * * *** ** **** * * ** * *** * *** consensus_7771#0 GAGCAGCATCGGCAGCATCAAAATATACAAATA-ATTGAAAACTAGTAGCACACACAAAC 1189 consensus_7771#1 ---CAACATAATCAACAAACAAACAAACAAATAGATCTAACGCTATCACGACAGACACAC 499 ** *** ** ** *** * ******* ** ** *** * *** *** ** consensus_7771#0 ACACACGAAGCTATCGTGAGTAAACTGTAAATATGATGTTTGCGTAAAAGTAATGCGAAA 1249 consensus_7771#1 ACACAACAGCATACCGTATG-GATGAGCAAATACAAAAC-------AAAGAAACACTGTA 551 ***** * ** *** * * * ***** * **** ** * * consensus_7771#0 GTCTCACATATGCAACAGCCATTCGGATGGATGTTTAGCGGCATTCGTCAGAGCTCTAGC 1309 consensus_7771#1 AACAAATAAAAACAAAACCCATGCATTTGCACGAACAGCAG-GTTAGGCAGG----TAAA 606 * * * * *** * **** * ** * * *** * ** * *** ** consensus_7771#0 ATACGTTGCGCACCACGCAGTGATCATGGTAGCAGCAAGAT-CAGCAGAAACAATAATTC 1368 consensus_7771#1 CAAAGTTAAGTA------AATGTNTTTAATAAGCGCGCTCTGTAGCACANTATATAACTT 660 * *** * * * ** * ** ** * **** * **** * consensus_7771#0 AAACTACTAACGACCCTTCTCCCCTGCAGTACCAGTCTGG-TAAGCGTAAAGGATAACCA 1427 consensus_7771#1 TA-CTGTAACGGAACAGGAAAGCAGGAAGTAGCAGTTCGCCTGAGTGGGTAGGAAAAGC- 718 * ** * ** * * * **** **** * * ** * **** ** * consensus_7771#0 TAATATCAACCCATTAATAACAGCCAAAACAGCAAACAATGATGAGGTTGAGATTGTTTG 1487 consensus_7771#1 TAACAGTGCANAGAAAATCAAGCGTGANACGGNA-------------------------- 752 *** * *** * * ** * * consensus_7771#0 AAATATCGTCTTTAACTGCTGCAAACCCCTAGAGGTAGGCTAGTAAGGGTAAGGC 1542 consensus_7771#1 ------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||