These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7775#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1057 fasta sequence [TGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATTTCTTACACAAACACAACTGGTTACTTGTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCACTTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAATACGTCTATTATCCGCTTCACACATATACAGGGAGCACACTGCTAAGTGCTTCAATAATAGAGAATCCTTTTTTAACTGGTAGGACAACACAGAAACACACACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA--AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGGTGATGACCGTTTGTGGAGCATGGACGAATACCGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACT] [+] EMBL BX608993 [TGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATTTCTTACACAAACACAACTGGTTACTTGTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCACTTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAATACGTCTATTATCCGCTTCACACATATACAGGGAGCACACTGCTAAGTGCTTCAATAATAGAGAATCCTTTTTTAACTGGTAGGACAACACAGAAACACACACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACATAACAAACAAACAAGCATGAAGACGATTTCG ] [+] EMBL BX627808 [ AAGTGCTTCAATAATAGAGAATCCTTTTTTAACTGGTAGGACAACACAGAAACACACACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGGTGATGACCGTTTGTG ] [+] EMBL BX621573 [ ACACACACACAAATTAGGGCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAA AACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGTGGTGGTGATGACCGTTTGTGGAGCATGGACGAATACCGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCCACT] [+] EMBL BX621908 [ GCTCCAAAGGGTCTGTATCTTATCTTCCGGCATACGAAACCTAAGTCTACTCCATACATCAACCTTAACCGTTATACAACACTACATCAACACTTATCAGCAAACATAACCATAGGAAGAGATGGTCTGA AGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTATAAAAAATAACATTAAAGTAAATTACGAAAGGAGGGGGAACGCTTTAAAAGGATCCACGATTCACTCATATATTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGGTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCG TTTTTTGTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTGCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGNCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGGTGATGACCGTTTGTGGAGCATGGACGAAT ] [+] EMBL BX610718 [ TTAAAAGGATCCACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGTGGTGGTGATGACCGTTTGTGGAGCATGGACGAATA CGGAGGTAGTGTGTGTGCGTGTGTGTGTGGCC ] [+] EMBL BX610719 [ CACGATTCACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCGCGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATGAAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATCCAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGATTACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCATTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATGTTTG ] consensusID : consensus_7775#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 768 fasta sequence [CAGAATCCCCCGCGGTTATTTCTTTGGAAAACTTTGCTAGTAGATTAGCAGAAAGATGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATATTCTTACACAAACACAACTGGTTACTTGTTTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCATTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTANCGTACTAATACGTCTATTATCCGTTCACACATATACAGGGAGACACACATGANTAAGTGCTTCANATAATAGCAGAATCCTTATTANACTGGTAGGACCAANCACAGAACAACACAAACACACACCACATTCAGGCTCCAAAGGGTCTGGANTCTCTATCATTCCGGCNTCCGNNACACCTAANGTCTTACTCCATACATACAAACCCTTAACCGTNATACNAACACATACATTCAAACAATATNAATCAACAANAAACCTTAACCCAATAACAGCACACNAGNNTAGNGNCTGNACAAGACGACGCANGCNANCGANNACGAAGAATGCAAAAACGAAGAAAGCAAAAGTAAAGAGGCTANACGACGTAATTACNACACAANACCATTTCACCANGNTGTCCCCACAACAAAAGACGNGCAGGACAGCAAANNGACGGAATCNGTACCCACAATAAANGGCNGATGTCAATNAACTTTCCAAAACCATTGGTCGTAACAT] [+] EMBL AL692232 [CAGAATCCCCCGCGGTTATTTCTTTGGAAAACTTTGCTAGTAGATTAGCAGAAAGATGGGTAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATATTCTTACACAAACACAACTGGTTACTTGTTTTTTTCCGATCGATCATTCTACCGATTGAGGTAGGAGAACGGAATGTTACGGGAAAAACAACAGTACCATCATCATTCACAAGTTCACATAAGGTACGATAAGTAAGAACAATAGTTANCGTACTAATACGTCTATTATCCGTTCACACATATACAGGGAGACACACATGANTAAGTGCTTCANATAATAGCAGAATCCTTATTANACTGGTAGGACCAANCACAGAACAACACAAACACACACCACATTCAGGCTCCAAAGGGTCTGGANTCTCTATCATTCCGGCNTCCGNNACACCTAANGTCTTACTCCATACATACAAACCCTTAACCGTNATACNAACACATACATTCAAACAATATNAATCAACAANAAACCTTAACCCAATAACAGCACACNAGNNTAGNGNCTGNACAAGACGACGCANGCNANCGANNACGAAGAATGCAAAAACGAAGAAAGCAAAAGTAAAGAGGCTANACGACGTAATTACNACACAANACCATTTCACCANGNTGTCCCCACAACAAAAGACGNGCAGGACAGCAAANNGACGGAATCNGTACCCACAATAAANGGCNGATGTCAATNAACTTTCCAAAACCATTGGTCGTAACAT] consensusID : consensus_7775#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 364 fasta sequence [NTTACTTGTTTTNTCCGATCGATCATTCTACTGATTGAGGTAGGAGAACGGAATGTTACGGGNAAAAACAACAGTACCATCATCACNTTCACAAGTNTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAACTACGTCTATTNATCCGCTGTCACACATATACAGGGAGCACACTGCTAAGTGCTCCAGTAATAGAGAATCCTTNTTTNTAACTGGTAGGACAACACAGCAAACACACACACNNCATAATGAGGGCTCCAAAGGGTCTGTATCTCATCTCCCNGCATACGAAACCTAAGTCTACTCCATACATCAACCTTTAACCGGTTATACAAACACTAACATCAACCACTTA] [+] EMBL BX619423 [NTTACTTGTTTTNTCCGATCGATCATTCTACTGATTGAGGTAGGAGAACGGAATGTTACGGGNAAAAACAACAGTACCATCATCACNTTCACAAGTNTCACATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAACTACGTCTATTNATCCGCTGTCACACATATACAGGGAGCACACTGCTAAGTGCTCCAGTAATAGAGAATCCTTNTTTNTAACTGGTAGGACAACACAGCAAACACACACACNNCATAATGAGGGCTCCAAAGGGTCTGTATCTCATCTCCCNGCATACGAAACCTAAGTCTACTCCATACATCAACCTTTAACCGGTTATACAAACACTAACATCAACCACTTA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7775#0 --------------------------------------------------------TGGG 4 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 CAGAATCCCCCGCGGTTATTTCTTTGGAAAACTTTGCTAGTAGATTAGCAGAAAGATGGG 60 consensus_7775#0 TAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTAT-TT 63 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 TAAGAGGAAAGCGGGAGAAACATTGTTCGAAATCATTGATTAATTCGCTTTTTTTATATT 120 consensus_7775#0 CTTACACAAACACAACTGGTTACTTGTTTTT--CCGATCGATCATTCTACCGATTGAGGT 121 consensus_7775#2 ------------------NTTACTTGTTTTNT-CCGATCGATCATTCTACTGATTGAGGT 41 consensus_7775#1 CTTACACAAACACAACTGGTTACTTGTTTTTTTCCGATCGATCATTCTACCGATTGAGGT 180 *********** ***************** ********* consensus_7775#0 AGGAGAACGGAATGTTACGGGAAAAA-CAACAGTACCATCATCACTT-CACAAGTT-CAC 178 consensus_7775#2 AGGAGAACGGAATGTTACGGGNAAAAACAACAGTACCATCATCACNTTCACAAGTNTCAC 101 consensus_7775#1 AGGAGAACGGAATGTTACGGGAAAAA-CAACAGTACCATCATCATT--CACAAGTT-CAC 236 ********************* **** ***************** ******* *** consensus_7775#0 ATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAA-TACGTCTATTA-TCCGCT-T 235 consensus_7775#2 ATAAGGTACGATAAGTAAGAACAATAGTTAAAGTACTAACTACGTCTATTNATCCGCTGT 161 consensus_7775#1 ATAAGGTACGATAAGTAAGAACAATAGTTANCGTACTAA-TACGTCTATTA-TCCGTT-- 292 ****************************** ******* ********** **** * consensus_7775#0 CACACATATACAGGGAG---CACACTGCTAAGTGCTTCAA-TAATAG-AGAATCCTTTTT 290 consensus_7775#2 CACACATATACAGGGAG---CACACTGCTAAGTGCTCCAG-TAATAG-AGAATCCTTNTT 216 consensus_7775#1 CACACATATACAGGGAGACACACATGANTAAGTGCTTCANATAATAGCAGAATCCTTATT 352 ***************** **** ******** ** ****** ********* ** consensus_7775#0 TA--ACTGGTAGGAC--AACACAGAAACACACACACACACACAA-ATTAGGGCTCCAAAG 345 consensus_7775#2 TNTAACTGGTAGGAC--AACACAGCAA-ACACACACACNNCATA-ATGAGGGCTCCAAAG 272 consensus_7775#1 AN--ACTGGTAGGACCAANCACAGAACAACACAAACACACACCACATTCAGGCTCCAAAG 410 *********** * ***** * ***** **** * ** ********** consensus_7775#0 GGTCTGTATCTT--ATC-TTCCGGCATACGAAAC--CTAAG--TCTACTCCATACATC-- 396 consensus_7775#2 GGTCTGTATCTC--ATC-TCCCNGCATACGAAAC--CTAAG--TCTACTCCATACATC-- 323 consensus_7775#1 GGTCTGGANTCTCTATCATTCCGGCNTCCGNNACACCTAANGTCTTACTCCATACATACA 470 ****** * *** * ** ** * ** ** **** ************ consensus_7775#0 AACCTT-AACCG-TTATACAA-CACTA-CATCAAC-ACTTATCAGCAAACATAACCATAG 451 consensus_7775#2 AACCTTTAACCGGTTATACAAACACTAACATCAACCACTTA------------------- 364 consensus_7775#1 AACCCTTAACCG-TNATACNAACACATACATTCA------AACAATATNAATCA--ACAA 521 **** * ***** * **** * *** *** * * consensus_7775#0 GAAGAGATGGTCTGAAGAGAGAGAGAGAGAGAGAGAAAGAGAGAAGTAGGGCTAGAGTAT 511 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 NAAACCTTAACCCAATAACAGCACACNAGNNTAGNGNCTGNACAAGACGACGCANGCNAN 581 consensus_7775#0 AAAAAAACATTAAAGTAAATTACGAAAGGAAGGGGAACGCTTTAAAAGGATCCACGATTC 571 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 CGANNACGAAGAATGCAAAA-ACGAA--GAAAGCAAAAG--TAAAGAGGCTANACGACGT 636 consensus_7775#0 ACTCATATACTGAAAATGATGGTACACATTGATGCAATTATGGTTTTTGCTGTTTTGTCG 631 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 AATTACN-ACACAANACCAT--TTCACCANGNTGTCCCCACAACAAAAGACGN---GCAG 690 consensus_7775#0 CGCTAGGCATAGGCAGAAGAGAAGCGGAGAGAAACAAAACAAAACAAACAAACAAGCATG 691 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 GACAGCAAANNGACGGAATCNGTACCCACAATAAANGGCNGATGTCAATNAACTTTC--C 748 consensus_7775#0 AAGACGATTTCGTGTTCTGCATTGGCATTGGCGTTTTTTTTTAGCTCTTTAAAAAGCATC 751 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 AAAACCATTGGTCGTAACAT---------------------------------------- 768 consensus_7775#0 CAAGCAGTGTAGTACACACTTATTATGAATTATTATTATGATTATTATAATTATAACGAT 811 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 ------------------------------------------------------------ consensus_7775#0 TACCTTTAATGTACGATCACTACCAGAGCTCTAGTGTTCGATCGCGGTGGAATGGAAGCA 871 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 ------------------------------------------------------------ consensus_7775#0 TTACTCCTGTGTGATTGATGATGGCCACGCGGTGGCTCCGGAAACCCGTAAGCGGCCATG 931 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 ------------------------------------------------------------ consensus_7775#0 TTTGGATGTTCTCTAAGAACGATGATTTATGAAAATTGAATCCCGGGAAAAAGGNGGTGG 991 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 ------------------------------------------------------------ consensus_7775#0 TGATGACCGTTTGTGGAGCATGGACGAATACCGGAGGTAGTGTGTGTGCGTGTGTGTGTG 1051 consensus_7775#2 ------------------------------------------------------------ consensus_7775#1 ------------------------------------------------------------ consensus_7775#0 GCCACT 1057 consensus_7775#2 ------ consensus_7775#1 ------ |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||