These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7815#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1652 fasta sequence [TCGCCCGAGGTNAACAAGAATCTAGGCGAGGCGCATCAAACATCGCCGCCCTTTCGTCGTACACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCG-AAAACACGATGACCGAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATATCTTACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCTGAGGGAGAAGCTGCGATAAGCGCGTTTACCGGAAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATTAGAAATGAATTTGCC-AAAAAACAAGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATG-CCACTACCAACCTGTATTTCAACCTTCGCTGTGTGATAATCAGCTTTATCGGTGAAGCATATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACGAGGTTATTGGTTGAAATTACCTCGGTGGACGCATACATACGATAAATAGTTGTATTACGTACCTTCCCCACAACAATAACGATGCAGGATGAGCAGCAGCAGGAGCCGAAGCAAACCAAAAGGACCACTAAAGGGCTTTTGCTGCTAAACTACAAGCAACCAACATTGCAGGAACTAAAAAGGGTTAGATTTTGATCGTGCAACGACGATATTTTTGTGTGCGTGTGATAGAGAAGCTACTACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTACTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCTGTCTAGACGACATAAGACAAAAGTACAAGTACGCTACTGATAGTGTACGGTTTTGTGCGTGTTTTTTGAGGGGGAGTAAACTTACTTAGTTTGATTTTGGTTTTTTTTCTTCTGTTTTTGAGTTGTTGTATGGCTGTAAAAGGAATTGTAACGATTTCGACTGAAAAGGGCGTAGGAAGAAAGAGGAAAGGAAACGGTAGTGATCGTAGGAAAGATCGATAGAGATAGTTCTTTTTTTTGCACTAGCATATCGCTTGTCTTACAGGGTTGAAAATAGCTTCTTCTTTTGTTGTATTCACAACAGGAATAAGGCAAGGGAGTAAATCCTTAAAAAAAACCAGGCTTTGGATTTCATATTTTGACCGTAGTGTTTAGTTCACGTGTGTTCATTG] [+] EMBL AL932249 [TCGCCCGAGGTNAACAAGAATCTAGGCGAGGCGCATCAAACATCGCCGCCCTTTCGTCGTACACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCG AAAACACGATGACCGAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATA ] [+] EMBL BM594181 [ ccgCACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAAACGAAAAACACGATGACTGAAGCGCAGATCTGTGATATTAGCGCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTGCACGACGATTCGCGAATATCTTACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCTGAGGGAGAAGCTGCGATAAGCGCGTTTACCGGAAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCC ] [+] EMBL BX622552 [ nACGAAACATATCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCG AAAACACGATGACCGAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTCCGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTTACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGCCACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATATCTTACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCACTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCT ] [+] EMBL BX627007 [ tntTCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTGTACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCTGACCTGACGCGCTACTACGAAATCCGCGAGCTGGACGATATGACCGAGGACTGGCTGAAGGAGAAGCTGCGATAAGCGCGTTTACCGTGAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATTAGAAATGAATTTGCCAAAAAAACAAGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATG CCACTACCAACCTGTATTTCAACCTTCGCTGTGTGATAATCAGCTTTATCGGTGAAGCATATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACGAGGTTATTGGTTGAAATTACCTCGGTGGACGCATACATACGATAAATAGTTGTATTACGTACCTT ] [+] EMBL BM599382 [ ccgCACACACACACACATATACACGCATTGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATGAGAAATGACTTTGCC AAAAAACAAGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATGCCCACTACCAACCTGTATTTCAAACTCCGCTGTATGATAATCAGCTTTATCGGTGAAGCATATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACGAGGTTATTGGTTGAAATTACCTCGGTGAACGCATACATACGATAAATAGTTGTATTACGTACCTTCCCCACAACAATAACGATGCAGGATGAGCAGCAGCAGGAGCCGAAGCAAACCAAAAGGACCACTAAAGGGCTTTTGCTGCTAAACTACAAGCAACCAACATTGCAGGAACTAAAAAGGGTTAGATTTTGATCGTGCAACGACGATATTTTTGTGTGCGTGTGATAGAGAAGCTACTACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTACTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCTGTCTAGAC ] [+] EMBL BM582610 [ ccgGTGATAGAGAAGCTACTACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTACTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCTGTCTAGACGACATAAGACAAAAGTACAAGTACGCTACTGATAGTGTACGGTTTTGTGCGTGTTTTTTGAGGGGGAGTAAACTTACTTAGTTTGATTTTGGTTTTTTTTCTTCTGTTTTTGAGTTGTTGTATGGCTGTAAAAGGAATTGTAACGATTTCGACTGAAAAGGGCGTAGGAAGAAAGAGGAAAGGAAACGGTAGTGATCGTAGGAAAGATCGATAGAGATAGTTCTTTTTTTTGCACTAGCATATCGCTTGTCTTACAGGGTTGAAAATAGCTTCTTCTTTTGTTGTATTCACAACAGGAATAAGGCAAGGGAGTAAATCCTTAAAAAAAACCAGGCTTTGGATTTCATATTTTGACCGTAGTGTTTAGTTCACGTGTGTTCATTG] consensusID : consensus_7815#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 324 fasta sequence [TACGACGAAAGGGCGGCGATGTTTGAATGCGCCTCGCCTAGATTCTTTGTTTGTGTTTTGTTCGGTGCCGTTTTGTATTGGTTGTCTTCTTGTTCTTGGACCCGTTGGACAAGGCGAGAGTTTTTGACGTTTGAAAATAGCTGCATCTTGCTCATTTTCTCTAGCCGTCCTTTACTCGCTTACAGTGCTCGTCTCAAGGTGAGTTTCTCTGCCCCCTGCTCACACTTTGCTCCAAACACTTCTTCCACTTTGTCGTACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCGAAATAGAAG] [+] EMBL CNS09HE9 [TACGACGAAAGGGCGGCGATGTTTGAATGCGCCTCGCCTAGATTCTTTGTTTGTGTTTTGTTCGGTGCCGTTTTGTATTGGTTGTCTTCTTGTTCTTGGACCCGTTGGACAAGGCGAGAGTTTTTGACGTTTGAAAATAGCTGCATCTTGCTCATTTTCTCTAGCCGTCCTTTACTCGCTTACAGTGCTCGTCTCAAGGTGAGTTTCTCTGCCCCCTGCTCACACTTTGCTCCAAACACTTCTTCCACTTTGTCGTACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCGAAATAGAAG] [+] EMBL CNS0938P [ GCTGCATCTTGCTCATTTTCTCTAGCCGTCCTTTACTCGCTTACAGTGCTCGTCTCAAGGTGAGTTTCTCTGCCCCCTGCTCACACTTTGCTCCAAACACTTCTTCCACTTTGTCGTACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7815#0 TCGCCCGAGGTNAACAAGAATCTAGGCGAGGCGCATCAAACATCGCCGCCCTTTCGTCGT 60 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 ACACTCTTCGGCAGCATAATTCCGCACTTGGTTTGTTCAAATTTCTCGCAACGAAACATA 120 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TCGCTATTGGTTTTGTGCTGTGTTTGTGAGTGCTCGAAAGGAACCGAAAACACGATGACC 180 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 GAAGCGCAGATCTGTGATATTAGCCCCGAGGCAAAGGAGGAGATCAGCAAGTTTCGCTTC 240 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CGACGCAACGCAACCAATACGGCATTGATTCTGAAAATCGACCGCGAGAAGCAGCTGGTT 300 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 ACCGTGGACGAGCTGCTGGATGACGTAGCGATCGAGGAGCTGCAGGAACAGCTGCCCAGC 360 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CACCAGCCGCGCTACATCATCTACAGCTACAAGATGGTACATGACGATTCACGGATATCT 420 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TACCCGATGTGCTTCATCTTCTACACGCCGCGCGACAGCCAGATGGAGCTGTGCATGCTG 480 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TACGCGAAAACGCGCATGGCGCTGCAGCGCGAGGCCGACCTGACGCGCTACTACGAAATC 540 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CGCGAGCTGGACGATATGACCGAGGACTGGCTGAGGGAGAAGCTGCGATAAGCGCGTTTA 600 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CCGGAAGCACTTTACAAAAGACACAAACACACCTACACACACACACACATATACACGCAT 660 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 TGCAACGACAGTACAGTTGGCCCCAGTTGAGCGAATTAGAAATGAATTTGCCAAAAAACA 720 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 AGAAAGACAAACTAAATGCCAGAAGAAAGTGAAAGCAATAATCGAGGGCCGTAACTCATG 780 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 CCACTACCAACCTGTATTTCAACCTTCGCTGTGTGATAATCAGCTTTATCGGTGAAGCAT 840 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 ATCCCAGCATTATTACATTAGTAGAACAGGGAGTTACGCATTTAGAGAGCTTATTGGACG 900 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 AGGTTATTGGTTGAAATTACCTCGGTGGACGCATACATACGATAAATAGTTGTATTACGT 960 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 ACCTTCCCCACAACAATAACGATGCAGGATGAGCAGCAGCAGGAGCCGAAGCAAACCAAA 1020 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 AGGACCACTAAAGGGCTTTTGCTGCTAAACTACAAGCAACCAACATTGCAGGAACTAAAA 1080 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 AGGGTTAGATTTTGATCGTGCAACGACGATATTTTTGTGTGCGTGTGATAGAGAAGCTAC 1140 consensus_7815#1 ----------TACGACGAAAGGGCGGCGATGTTTGAATGCGCCTCGCCTAGA-----TTC 45 * ** ** **** *** ** ** * **** * * consensus_7815#0 TACATACCTATATAGCTGTATAGAAGTTCTTCCTTTATTGTATTCTATTAGCCGATGTTA 1200 consensus_7815#1 TTTGTTTGTGTTTTGTTCGGT-GCCGTTTTGTATTGGTTGTCTTCTTGTTCTTGGACCCG 104 * * * * * * * * * *** * ** **** **** * * consensus_7815#0 CTGTATTTCCACAGTAGCAGAGTGTATTTTCTTTCCATTTTCTTACGCCACGTGGCGTCT 1260 consensus_7815#1 TTGGA------CAAGGCGAGAGTTTTTGACGTTTGAAAATAGCTGCATCTTGCTCATTTT 158 ** * ** ***** * * *** * * * * * * * * consensus_7815#0 GTCTAGACGACATAAGACAAAAGTACAAGTACGCTACTGATAGTGTACGGTTTTGTGCGT 1320 consensus_7815#1 CTCTAGCCGTCCTT---------------TAC-TCGCTTACAGTGCTCGTCTCAAGGTGA 202 ***** ** * * *** ** * **** ** * * * consensus_7815#0 GTTTTTTGAGGGGGAGTAAACTTACTTAGTTTGATTTTGGTTTTTTTTCTTCTGTTTTTG 1380 consensus_7815#1 GTTTCTCT----GCCCCCTGCTCAC--ACTTTGCTCCAAACACTTCTTCCACT-TTGTCG 255 **** * * ** ** * **** * ** *** ** ** * * consensus_7815#0 AGTTGTTGTATGGCTGTAAAAGGAATTGTAACGATTTCGACTGAAAAGGGCGTAGGAAGA 1440 consensus_7815#1 TACCGTCTCTTTCGCGCACATGGACGCGTGACAAATGTAAACAACTTGGTGGCTGATGCG 315 ** * * * * *** ** ** * * * * ** * * consensus_7815#0 AAGAGGAAAGGAAACGGTAGTGATCGTAGGAAAGATCGATAGAGATAGTTCTTTTTTTTG 1500 consensus_7815#1 AAATAGAAG--------------------------------------------------- 324 ** *** consensus_7815#0 CACTAGCATATCGCTTGTCTTACAGGGTTGAAAATAGCTTCTTCTTTTGTTGTATTCACA 1560 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 ACAGGAATAAGGCAAGGGAGTAAATCCTTAAAAAAAACCAGGCTTTGGATTTCATATTTT 1620 consensus_7815#1 ------------------------------------------------------------ consensus_7815#0 GACCGTAGTGTTTAGTTCACGTGTGTTCATTG 1652 consensus_7815#1 -------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||