|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7827#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 782 fasta sequence
[AGGCTCTTAGGCCCCAAAAAGGGAATTTGCCCACGAGGTTAGAGAGCGCCCGGCCAGCTCGGGGTAAAGGACTGGCGTGATGCAGGGGGTACGAAACTACGTGCGCAGCAAGCTGACCGGTGGTGGCTGCCTGGGGGGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCCAGCAATGCCACCTCCTCAACACCTCGACCGCGTCGGCCCTCACCGGCCCGGTCGCCCCATCAACCGTGCGGCAGCAATCAGTGGCGGTGCCGCGGCTGTCCGACGCCGCGCCATCGGCGTGTCGAACGAACCGGCCGCATCGTGCCGAACGACGACGAGGACGACGAGCGGATCTTCTTCAACGACAAGGACTACACCGCGGTCAAGCCGCTCGACGGCAGCGAGGACGAGCGGGACGTCACCGAGGTCCCCGGTCACGACGACCGTCGCCGTCGACAACCGGTTCATCATAGCCGGGCCGCTCGCGTGCAAGAGCGGGCAGGAGGTGGTCAACGGGAAGTGTCGAAATGTGTTCTGAGCAAACGCAGTGCAAGTGGCGAGTGGGGGGGGGGAGGGGGAGGGTCCCTCCTCCATTCAATCCTCCTCCGTTTCCCTCTTTCCTACGATGGTCCCGTCGCGTCGACGCCTCGAAACTGTCCGTTGGGGAGTGATGATTTGCATTCACGGATGCCCTTGTATCGGGGATGGGGAGGGGGATTGTGTGATTCCCACCCTTGCTTCTCTATCCCACAGAAACCCTCCCACTCTGTCTCTCTTTCTCG]
[+] EMBL AL696593 [AGGCTCTTAGGCCCCAAAAAGGGAATTTGCCCACGAGGTTAGAGAGCGCCCGGCCAGCTCGGGGTAAAGGACTGGCGTGATGCAGGGGGTACGAAACTACGTGCGCAGCAAGCTGACCGGTGGTGGCTGCCTGGGGGGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCCAGCAATGCCACCTCCTCAACACCTCGACCGCGTCGGCCCTCACCGGCCCGGTCGCCCCATCAACCGTGCGGCAGCAATCAGTGGCGGTGCCGCGGCTGTCCGACGCCGCGCCATCGGCGTGTCGAACGAACCGGCCGCATCGTGCCGAACGACGACGAGGACGACGAGCGGATCTTCTTCAACGACAAGGACTACACCGCGGTCAAGCCGCTCGACGGCAGCGAGGACGAGCGGGACGTCACCGAGGTCCCCGGTCACGACGACCGTCGCCGTCGACAACC ]
[+] EMBL BM642888 [ ccgAGCCGCTCGACGGCAGCGAGGACGAGCGGGACGTCACCGA GTCCCTGGTCACGACGACCGTCGCCGTCGACAACCGGTTCATCATAGCCGGGCCGCTCGCGTGCAAGAGCGGGCAGGAGGTGGTCAACGGGAAGTGTCGAAATGTGTTCTGAGCAAACGCAGTGCAAGTGGCGAGTGGGGGGGGGGAGGGGGAGGGTCCCTCCTCCATTCAATCCTCCTCCGTTTCCCTCTTTCCTACGATGGTCCCGTCGCGTCGACGCCTCGAAACTGTCCGTTGGGGAGTGATGATTTGCATTCACGGATGCCCTTGTATCGGGGATGGGGAGGGGGATTGTGTGATTCCCACCCTTGCTTCTCTATCCCACAGAAACCCTCCCACTCTGTCTCTCTTTCTCG]
consensusID : consensus_7827#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 696 fasta sequence
[CCGCGGACGCGTGGCTGCGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCTGGTCTGCTCGAACCCGACCCACGGCACACCGATCGACACGGTGACGGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACCAAGGTGACCGAGGTGGCGAGCGGCACCACCGAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTCACGTCCGCCTTCAAGCAGGGCACGGCCAAGATGAAGGAGAGCCTGGAGAGCGCCGCCAGCTCGGTAAAGGACGGCGTGATGCAGGGGTACGACTACGTGCGCAGCAAGCTGACCGGTGGTGGCGCCGGGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCCAGCAATGCCACCTCCTC]
[+] EMBL BM584729 [CCGCGGACGCGTGGGTGCGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCTGGTCTGCTCGAACCCGACCCACGGCACACCGATCGACACGGTGACGGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACCAAGGTGACCGAGGTGGCGAGCGGCACCACCGAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTCACGTCCGCCTTCAAGCAGGGCACGGCCAAGATGAAGGAG ]
[+] EMBL BM628079 [ ccGGCTGCGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCTGGTCTGCTCGAACCCGACCCACGGCACACCGATCGACACGGTGACGGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACCAAGGTGACCGAGGTGGCGAGCGGCACCACCGAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTCACGTCCGCCTTCAAGCAGGGCACGGCCAAGATGAA ]
[+] EMBL BM629113 [ ccgGCGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCTGGTCTGCTCGAACCCGACCCACGGCACACCGATCGACACGGTGACGGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACCAAGGTGACCGAGGTGGCGAGCGGCACCACCGAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTCACGTCCGCCTTCAAGCAGGGCACGGCCAAGATGAAGGAGAGCCTGGAGAGCGCCGCCAGCTCGGTAAAGGACGGCGTGATGCAGGGGTACGACTACGTGCGCAGCAAGCTGACCGGTGGTGGCGCCGGGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCCAGCAATGCCACCTCCTC]
[+] EMBL BM646568 [ ccgGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCTGGTCTGCTCGAACCCGACCCACGGCACACCGATCGACACGGTGACGGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACCAAGGTGACCGAGGTGGCGAGCGGCACCACCGAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTCACGTCCGCCTTCAAGCAGGGCACGGCCAAGATGAAGGAGAGCCTGGAGAGCGCCGCCAGCTCGGTAAAGGACGGCGTGATGCAGGGGTACGACTACGTGCGCAGCAAGCTGACCGGTGGTGGCGCCGGGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCCAGCAATGCCA ]
[+] EMBL BX626365 [ GTGTAGCAGCAGCAGCAGCACTGCTGGTCTGCTCNAACCCGACCCACGGCACACCGATCGACACGGTGACGGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATGGTTCGGNCGGGCTGGAGTCGCTCCTCCCGACCAANGTGACCGAGGTGGCGAGCGGCACCACCGAAACTAGCAAGATGTNCCGCTTTCTCGACGACTTCACGTCCGCCTTCAAGCAGGGCACGGCCAAGATGAAGGAGAGNCTGGAGAGCGCCGCCAGCTCGGNAAAGGACGGCGTGATGCAGGGGTACNACTACGTGCGCAGCAAGCTGACCGGTGGTGGCGCCGGGNCCGACCCGTCCACCCCG ]
consensusID : consensus_7827#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 552 fasta sequence
[ATCGCCCGAGGTGTGTGCGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCGTGGTCTGCGTCGAACCCGACCACGGGACACCGATCGACACGGTGACGGACACAACCCGCTGGCCGTGCCAACGGNCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACAANGTGACCGANGTGGTGAGCGGGCACCAACGAAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTACACAGTCCGCCTTCAAGCAAGGGACACTGGCAAGATGAAGGAGA]
[+] EMBL AL931184 [ATCGCCCGAGGTGTGTGCGAGCAGCTGGTTGAGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTTTCGGCTTTGGATGTGTGTTTGCAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGAGCAGCCGGTGACGTAGCCGCTTTGTTTTTGTTTGGTGTTTGGTTTTATCGCCGTGACCTACTGTGCAAAACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTGGATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAGCAGCAGCACTGCGTGGTCTGCGTCGAACCCGACCACGGGACACCGATCGACACGGTGACGGACACAACCCGCTGGCCGTGCCAACGGNCACCGATGGTTCGGCCGGGCTGGAGTCGCTCCTCCCGACAANGTGACCGANGTGGTGAGCGGGCACCAACGAAAACTAGCAAGATGTCCCGCTTTCTCGACGACTTACACAGTCCGCCTTCAAGCAAGGGACACTGGCAAGATGAAGGAGA]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7827#1 -----------------------------CCGCGGACGCGTGGCTGCGAGCAGCTGGTTG 31
consensus_7827#2 ---------------------------ATCGCCCGAGGTGTG--TGCGAGCAGCTGGTTG 31
consensus_7827#0 AGGCTCTTAGGCCCCAAAAAGGGAATTTGCCCACGAGGTTAGAGAGCGCCCGGCCAGCTC 60
* ** * * *** * ** * *
consensus_7827#1 AGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTT--TCGG 89
consensus_7827#2 AGCCATTCTGCCTCGTTTCTAGCTGTATGTGCGGTGGTGTTTGCGTGGTTTCTT--TCGG 89
consensus_7827#0 GGGGTAAAGGACTGGCGTGATGCAGGGGGTACGAAACTACGTGCGCAGCAAGCTGACCGG 120
* * ** * * ** * ** ** * **** * * ***
consensus_7827#1 CTTTGGATGTGTGTTTG--CAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGA-GCAGCC 146
consensus_7827#2 CTTTGGATGTGTGTTTG--CAAGTCTGTTCGAGTTTAGAAAGTTTTGTGCTGA-GCAGCC 146
consensus_7827#0 TGGTGGCTGCCTGGGGGGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCC 180
*** ** ** * * * ** * * * ** ** ***
consensus_7827#1 GGTGACGTAGCCGCTTTGTTTTTGTTTTGGTGTTTGGTTTTATCGCCGTG--------AC 198
consensus_7827#2 GGTGACGTAGCCGCTTTGTTTTTGTTT-GGTGTTTGGTTTTATCGCCGTG--------AC 197
consensus_7827#0 AGCAATGCCACCTCCTCAACACCTCGACCGCGTCGGCCCTCACCGGCCCGGTCGCCCCAT 240
* * * ** * * * ** * * * ** * * *
consensus_7827#1 CTACTGTGCAA----AACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTG 254
consensus_7827#2 CTACTGTGCAA----AACGATTCGAAACGCCGAGATTCATTCTGCAGAGCTTCCTTGGTG 253
consensus_7827#0 CAACCGTGCGGCAGCAATCAGTGGCGGTGCCGCGGCT-GTCCGACGCCGCGCCATCGGCG 299
* ** **** ** * * * **** * * * * * ** * * ** *
consensus_7827#1 GATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAG 314
consensus_7827#2 GATTTGTTCCATTTTTCTCGGCAATGGCAACGCAACTGTTGTGGCTGTGTGTAGCAGCAG 313
consensus_7827#0 TGTCGAACGAACCGGCCGCATCGTGCCGAACGACGACGAGGACGACGAGCGGATCTTCTT 359
* * * * * **** * * * * * * * * *
consensus_7827#1 CAGCAGCACTGC-TGGTCTGC-TCGAACCCGACCCACGGCACACCGATCGACACGGTGAC 372
consensus_7827#2 CAGCAGCACTGCGTGGTCTGCGTCGAACCCGACC-ACGGGACACCGATCGACACGGTGAC 372
consensus_7827#0 CAACGACAAGGACTACACCGCGGTCAAGCCGCTCGACGGCAGCGAGGACGA-GCGG-GAC 417
** * ** * * * ** ** *** * **** * * *** *** ***
consensus_7827#1 GGCACACAACCCGCTGCCCGTGCCAACGGCCACCGATG-------GTTCGGCCGGGCTGG 425
consensus_7827#2 GG-ACACAACCCGCTGGCCGTGCCAACGGNCACCGATG-------GTTCGGCCGGGCTGG 424
consensus_7827#0 GTCACCGAGGTCCCCGGTCACGACGACCGTCGCCGTCGACAACCGGTTCATCATAGCCGG 477
* ** * * * * * * * ** * * *** * **** * ** **
consensus_7827#1 AGTCGCTCCTCCCGACCAAGGTGACCGAGGTGGCGAGCGG-CACCACCGAAA-CT----- 478
consensus_7827#2 AGTCGCTCCTCCCGAC-AANGTGACCGANGTGGTGAGCGGGCACCAACGAAAACT----- 478
consensus_7827#0 -GCCGCTCGCGTGCAAGAGCGGGCAGGAGGTGGTCAACGGGAAGTGTCGAAATGTGTTCT 536
* ***** * * * * ** **** * *** * ***** *
consensus_7827#1 -AGCAAG----------ATGTCCCGCTTTCTCGACGACTT-CAC-GTCCGCC-----TTC 520
consensus_7827#2 -AGCAAG----------ATGTCCCGCTTTCTCGACGACTTACACAGTCCGCC-----TTC 522
consensus_7827#0 GAGCAAACGCAGTGCAAGTGGCGAGTGGGGGGGGGGAGGGGGAGGGTCCCTCCTCCATTC 596
***** ** * * * ** * **** * ***
consensus_7827#1 AAGCA--GGGCACGGCCAAGATGAAGGAGA-GCCTGGAGAGCGCCGCCAGCTCGGTAAAG 577
consensus_7827#2 AAGCAAGGGACACTGGCAAGATGAAGGAGA------------------------------ 552
consensus_7827#0 AATCCTCCTCCGTTTCCCTCTTTCCTACGATGGTCCCGTCGCGTCGACGCCTCGAAACTG 656
** * * * * **
consensus_7827#1 GACGGCGTGATGCAGGGGT--ACGACTACGTGCGCAGCAAGCTGACCGGTGGTGGCGCCG 635
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 TCCGTTGGGGAGTGATGATTTGCATTCACGGATGCCCTTGTATCGGGGATGGGGAGGGGG 716
consensus_7827#1 GGCCCGACCCGTCCACCCCGACCGCACCGGCCGACGACGCCGCCAGCAATGCCACCTCCT 695
consensus_7827#2 ------------------------------------------------------------
consensus_7827#0 ATTGTGTGATTCCCACCCTTGCTTCTCTATCCCACAGAAACCCTCCCACTCTGTCTCTCT 776
consensus_7827#1 C----- 696
consensus_7827#2 ------
consensus_7827#0 TTCTCG 782
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||