These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7834#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1789 fasta sequence [TGGTTTTTTTGTTGGTTTTTTTTATTTTCATTAAATTGGTTAGTATTTTAGTCGAGAGTATTACTAATATATTGCTGTGCCATAAAGACCAATACACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGGCCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTTACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCTGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCGCCACAGTTTTCAAACACCACACTATCGCCCACGTTCAGCTCGGGCAGCATCACGTCGGGCAGGATCAGATCCATCACGTCGCACGTTGGGCCCCAAACCGACGTGGGGAAGTCTTTCGCACCGGTCTTGCGCTCCACGATCGGTATCGCTGGCTGTGCCTCGTGGGCAGTGCAGTAGAACGTCCCGAAGATGCCATCGTTCAGATAGTAATACATTCGCGTTTTCTCCGTACCATCCGGCTGCTTTTCCTTCATCACGCGCTTCGAGTCCACGAACGATACCAGCGTCACCGCCGACGACACAAAGTACCGGCCCGGCTCGGCAATGATGCGAATGTCCGACTCCGCGGGGAAGAATTGATCGATTGCCACGTTCACCGCCTGCGCGTACCGATCGATCGGTTTATCATTATCGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGTACTCGAACAAACCCTTCGCTATCTTCACCGCCTCATAATACACCTCGTGCTCGTCGCAGTCCGACCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCAGCAGCTCGGG-GCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG-CGCAAAGATG-ATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCT-GGCTGCCGG] [+] EMBL CNS09FIH [TGGTTTTTTTGTTGGTTTTTTTTATTTTCATTAAATTGGTTAGTATTTTAGTCGAGAGTATTACTAATATATTGCTGTGCCATAAAGACCAATACACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGGCCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTTACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCTGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCGCCACAGTTTTCAAACACCACACTATCGCCCACGTTCAGCTCGGGCAGCATCACGTCGGGCAGGATCAGATCCATCACGTCGCACGTTGGGCCCCAAACCGACGTGGGGAAGTCTTTCGCACCGGTCTTGCGCTCCACGATCGGTATCGCTGGCTGTGCCTCGTGGGCAGTGCAGTAGAACGTCCCGAAGATGCCATCGTTCAGATAGTAATACATTCGCGTTTTCTCCGTACCATCCGGCTGCTTTTCCTTCATCACGCGCTTCGAGTCCACGAACGATACCAGCGTCACCGCCGACGACACAAAGTACCGGCCCGGCTCGGCAATGATGCGAATGTCCGACTCCGCGGGGAAGAATTGATCGATTGCCACGTTCACCGCCTGCGCGTACCGATCGATCGGTTTATCATTATCGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGTACTCGAACAAACCCTTCGCTATCTTCACCGC ] [-] EMBL CNS09FIG [ ATCGATTGCCACGTTCACCG CTGCGCGTACCGATCGATCGGTTTATCATTATCGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGTACTCGAACAAACCCTTCGCTATCTTCACCGCCTCATAATACACCTCGTGCTCGTCGCAGTCCGACCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCAGCAGCTCGGG GCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCC GCTGTCGCAAAGATGTATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGAACGGTGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAG G TTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCT GGCTGC ] [-] EMBL BM637598 [ GTCACAGTCCGATCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCAGCAGCTCGGGCGCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCATACCTTCAGTGAGTCGTGGCGCATGCGCAGTACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTTTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGGATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCcgg ] [-] EMBL BM644552 [ CACCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCTGGGCTGCCGG] [-] EMBL BM647610 [ CCCGAACTTCTTGCCCAGCGAGCACCGTACCTTCAGTGAGTCGTGGCGCATGCGCAGTACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTTTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGGATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCAAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACACCGATGCTGGGCTGCCGG] [-] EMBL BM616255 [ ATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAATCTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTACAGCAGCGACGGGATCGATTTGGCCGGCTG CGCAAAGATG ATGCTCTCCGGCTTCACCCCGTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGTCATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCACGCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCT GGCgg ] [-] EMBL BM637582 [ TCGAGCACGTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGACATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTCCTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTTCCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCAAAGCGAGCGAACGCGATGAATGCGCGAGAGTAAAGCTGTACACCGATGCT GGCgg ] consensusID : consensus_7834#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 404 fasta sequence [ACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGACCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTAACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCAGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCNCACCTCGNGGGC] [-] EMBL AL932481 [ACCTCGTAATAATGCCCTGAGCGACCTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAACAGTAGTACAACCCGAACAAGAGTTGCGGACCAGGTAACATAATGCAAACTTAACTGCCATTGGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGATGGGAGTGTAACTGCTCTCGTGCGTAACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGCGGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCAGTATTTTCCAGGTACCTTCGCGCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCCCGTACGCNCACCTCGNGGGC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7834#0 TGGTTTTTTTGTTGGTTTTTTTTATTTTCATTAAATTGGTTAGTATTTTAGTCGAGAGTA 60 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 TTACTAATATATTGCTGTGCCATAAAGACCAATACACCTCGTAATAATGCCCTGAGCGAC 120 consensus_7834#1 -----------------------------------ACCTCGTAATAATGCCCTGAGCGAC 25 ************************* consensus_7834#0 CTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAAACA 180 consensus_7834#1 CTTATTTTCGCATTTTGAAAGCAATCTAATCGCTAAACCTAAAGCTAGGAACAAAAA-CA 84 ********************************************************* ** consensus_7834#0 GTAGTACAACCCGAACAAGAGTTGCGGGCCAGGTAACATAATGCAAACTTAACTGCCATT 240 consensus_7834#1 GTAGTACAACCCGAACAAGAGTTGCGGACCAGGTAACATAATGCAAACTTAACTGCCATT 144 *************************** ******************************** consensus_7834#0 GGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGA 300 consensus_7834#1 GGTACGTAGCTCAAGTGCTCCAATGCACATCCCATCAAACCAAGTACGGTGCCTCAACGA 204 ************************************************************ consensus_7834#0 TGGGAGTGTAACTGCTCTCGTGCGTTACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGC 360 consensus_7834#1 TGGGAGTGTAACTGCTCTCGTGCGTAACAAGCAGCTTGCCATCCGAGCTATCGAGGGAGC 264 ************************* ********************************** consensus_7834#0 GGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCTGTATTTTCCAGGTACCTTCGC 420 consensus_7834#1 GGGCCGAGATAGCTGAGGAAGCTGCGGTCAAGTCTTGCAGTATTTTCCAGGTACCTTCGC 324 ************************************** ********************* consensus_7834#0 GCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCC 480 consensus_7834#1 GCAGGTAGGCAATCACCTTGGGCAGGGGGAATCCGTTGAAGCGGCAGGCGAGCACCTGCC 384 ************************************************************ consensus_7834#0 CGTACGCGCCACAGTTTTCAAACACCACACTATCGCCCACGTTCAGCTCGGGCAGCATCA 540 consensus_7834#1 CGTACGCN---CACCTCGNGGGC------------------------------------- 404 ******* ** * * consensus_7834#0 CGTCGGGCAGGATCAGATCCATCACGTCGCACGTTGGGCCCCAAACCGACGTGGGGAAGT 600 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CTTTCGCACCGGTCTTGCGCTCCACGATCGGTATCGCTGGCTGTGCCTCGTGGGCAGTGC 660 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 AGTAGAACGTCCCGAAGATGCCATCGTTCAGATAGTAATACATTCGCGTTTTCTCCGTAC 720 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CATCCGGCTGCTTTTCCTTCATCACGCGCTTCGAGTCCACGAACGATACCAGCGTCACCG 780 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CCGACGACACAAAGTACCGGCCCGGCTCGGCAATGATGCGAATGTCCGACTCCGCGGGGA 840 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 AGAATTGATCGATTGCCACGTTCACCGCCTGCGCGTACCGATCGATCGGTTTATCATTAT 900 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CGCCCGGAAAGCCGCCCCCAATGTCCAGCAGACTAAACTCGTACCCAATCGTCTTGGCGT 960 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 ACTCGAACAAACCCTTCGCTATCTTCACCGCCTCATAATACACCTCGTGCTCGTCGCAGT 1020 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CCGACCCGACGTGGAAGCTTATCCCGATCACATTCATCCGCAGGGTGGCGGCATAGCGCA 1080 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 GCAGCTCGGGGCTTCCGCGATCGGATCACACCCGAACTTCTTGCCCAGCGAGCACCGTAC 1140 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CTTCAGTGAGTCGTGGCGCATGCGCAGCACCAGCCGCGCCTCCGGATAGTACTGATGAAT 1200 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CTTCTCCAGCTCCACCGCACCGTCGAACGTCATCACCGACACCTGCTTGGAGCGGGCGTA 1260 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CAGCAGCGACGGGATCGATTTGGCCGGCTGCGCAAAGATGATGCTCTCCGGCTTCACCCC 1320 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 GTACCCGAGCATGCGCTCCATCTCGCCCTTCGACGCACAGTCAAAGCCCGTCCCGAGCGT 1380 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CATCAGCGTCTGCAGAATGCGCGGATCGTCGTTGCACTTCACCGCGTAGTACGGCTTCAC 1440 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 GCGCGGCATCTGGGCGCACCAGCCGTAGTGCTTGCGCACCACATCGTCCAGATCGAGCAC 1500 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 GTGGAGCGGCTCCTCGTGCGGGCCCATGCGCACCACATCCCGGATCACGTCGCCGATGGA 1560 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CATGTCATCGCTGATGAGCGTCAGATCGGACGGGCACTCTAGCACACTCATTTTTGGTTC 1620 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CTTGCGTGGTGGGCTAACGAGACAGCTGGCCGGGGGGTCCTGTGCTACCGAATTTTCGTT 1680 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 CCTGGTTGCTGTTTGCGATACGATCTAAGGCCGCGGCACTGGACACGGCTAAGCGAGCGA 1740 consensus_7834#1 ------------------------------------------------------------ consensus_7834#0 ACGCGATGAATGCGCGAGAGTAAAGCTGTACGCCGATGCTGGCTGCCGG 1789 consensus_7834#1 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||