|
These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7836#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1459 fasta sequence
[GTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCC-GGCTTCC-GGAACTGGCAGGCGAACGAGTGTGGCTT-GGATTAAC-AGTCCACCGGTTAGCACCCCAATG-CCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAGATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCATGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAATATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCTGATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGTATGTGT-TGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTTAAGGATGAGACGCAGCGTTACGTG-GTAAAGGCAAATGGTAGGAATGATTGTGTTTAAAGTTCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTTCCCCTAGTATTAACTTCAAATCTCAATTACAACTAA-TCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCTTCAAACCACCT]
[+] EMBL BM620972 [GTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGACAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGC ]
[+] EMBL CNS08QMW [ CCGTGTG CA ACTGCGGCA CGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCCGGGCTTCCGGGAACTGGCAGGCGAACGAGTGTGGCTT GGATTAACAAGTCCACCGGTTAGCACCCCAATGCCCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAGATTCAGCGATGCACAAAAAAAACAGGACCGCAAACGCACGAG CGGCCACGCGCGC ]
[+] EMBL CNS08FJD [ ACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCC GGCTTCC GGAACTGGCAGGCGAACGAGTGTGGCTT GGATTAAC AGTCCACCGGTTAGCACCCCAATG CCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAGATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCATGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAATATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCTGATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGTATGTGT TGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTTAAGGATGAGACGCAGCGTTACGTG GTAAAGGCAAATGGTAGGAATGATTGTGTTTAAAGTTCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTT ]
[+] EMBL CNS08GJS [ ACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGAACGTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTCCTTAGCAACTGCC GGCTTCC GGAACTGGCAGGCGAACGAGTGTGGCTTAGGATTAAC AGTCCACCGGTTAGCACCCCAATG CCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTAAATCCCGAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCGCACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGACGAAATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCATGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAATATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGC ]
[-] EMBL CNS08FJE [ ggTTCGCTACAAATAACAGGAGACCCCCCGTGTTCTGGTAAATTTGTGCCTTTCCCCCCTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCTGATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGTATGTGTGTGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTTAAGGATGAGACGCAGCGTTAGCTGTGT AAGGCAAATGGTAGGAATGATTGTGTTTAAAGTTCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTTCCCCTAGTATTAACTTCAAATCTCAATTACAACTAA TCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCTTC ]
[-] EMBL CNS08QMX [ AGGTAGGCTTTTACTCCCCCTAGTATTAACTTCAAATCTCAATTACAACTAACTCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCTTCAAACCACCT]
[-] EMBL CNS08GJT [ CTCAATTACAACTAA TCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAATGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGATATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTCCCAACTTCCCCCATAGAAGGGTAGTGGGATGTTGGGATTTTTTTATATGCTGCATGTGAGTAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTTTCACAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAATAAATCCT ]
consensusID : consensus_7836#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 626 fasta sequence
[CCGCCGCGAGAGTCGTCCGCGGTCGCCCTGTCTTTTCGTTTGTTGCCCTTTGGTGCATTCGCTCACTTTCTTCGTACCGTAGTGCAAAACCGTGCGTGCATCCGTGTGTGTGTGTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGCGGAACCGGAAACACGATCCCGATCCCGAACCAAGGAGCTAACTCAACTCGACTCGCCCTACCCCGGAGGCGGCCCGGAGACCCCCAAGCGCACCATGTACTATCCGACGGCGGATCTACCGTCGCCGCAAACCTTC]
[+] EMBL BM586763 [CCGCCGCGAGAGTCGTCCGCGGTCGCCCTGTCTTTTCGTTTGTTGCCCTTTGGTGCATTCGCTCACTTTCTTCGTACCGTAGTGCAAAACCGTGCGTGCATCCGTGTGTGTGTGTGTCTGTGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTTGCTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCGCGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGGTCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCACCAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAAGGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAGAACAAAGCCACTGGGCGGAACCGGAAACACGATCCCGATCCCGAACCAAGGAGCTAACTCAACTCGACTCGCCCTACCCCGGAGGCGGCCCGGAGACCCCCAAGCGCACCATGTACTATCCGACGGCGGATCTACCGTCGCCGCAAACCTTC]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7836#0 ------------------------------------------------------------
consensus_7836#1 CCGCCGCGAGAGTCGTCCGCGGTCGCCCTGTCTTTTCGTTTGTTGCCCTTTGGTGCATTC 60
consensus_7836#0 -----------------------------------------------------GTGTCTG 7
consensus_7836#1 GCTCACTTTCTTCGTACCGTAGTGCAAAACCGTGCGTGCATCCGTGTGTGTGTGTGTCTG 120
*******
consensus_7836#0 TGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTGTGTGTGTGTTG 67
consensus_7836#1 TGTTTCGGTCCCTTGTTTTCCCGTGTGTGGTTCTCCCTTCCGGTGTGTG------TGTTG 174
************************************************* *****
consensus_7836#0 CTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCG 127
consensus_7836#1 CTCCGTACCCCCGTTTCGGCAGACCCGGACGGCCCTTCCCGTGTGTCGCAGTGTCCTTCG 234
************************************************************
consensus_7836#0 CGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGG 187
consensus_7836#1 CGAATGTGCGGCTGTGCGTGAACCCGTGTGCCACACTGCGGCACCGTAAGTGTTGCCGGG 294
************************************************************
consensus_7836#0 TCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCAC 247
consensus_7836#1 TCAGTTAAGGCGGCGAGTTCGACTGTCCAACCACAAGCATCAAGCAACGCTGCTCAGCAC 354
************************************************************
consensus_7836#0 CAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAA 307
consensus_7836#1 CAATCAACCCGAACGCCACACAAGCACAGCACCAGGCGACCAGCTAGCGCTCTCCAGCAA 414
************************************************************
consensus_7836#0 GGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAG 367
consensus_7836#1 GGGAACGGAAAAGAAGAAAACACACTTGTCCCATCAGCAAACAAAAGAGAAGAAAAAAAG 474
************************************************************
consensus_7836#0 AACAAAGCCACTGGG---AAC----GTCTCTTTGCCCATCGTGCACGCGCGCGCCTTCTC 420
consensus_7836#1 AACAAAGCCACTGGGCGGAACCGGAAACACGATCCCGATCCCGAACCAAGGAGCTAACTC 534
*************** *** * * * ** *** * ** * ** ***
consensus_7836#0 CTTAGCAACTGCCGGCTTCCGGAACTGGCAGGCGAACGAGTGTGGCTTGGATTAACAGTC 480
consensus_7836#1 AACTCGACTCGCCCTACCCCGGAGGCGGCCCGGAGACCCCCAAGCGCACCATGTACTATC 594
* *** ***** *** * ** * ** ** **
consensus_7836#0 CACCGGTTAGCACCCCAATGCCCCAATGGCTTCCAGGCTGCTGCAGGAGTAGTATCTCCC 540
consensus_7836#1 CGACGGCGGATCTACCGTCGCCGCAA-ACCTTC--------------------------- 626
* *** ** *** *** ****
consensus_7836#0 GAGACAGCGGACATCACGCTACGATAACAACCGACCGCAACCGGGGAGAAACACGTTGCG 600
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CACACGTTTGATGGGGTTTTTTTTTTTCTTCACACACAAGCACTTTGTTTGTTCCCAGAC 660
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 GAGATTCAGCGATGCACAAAACAAACAGGACCGCAAACGCACGAGCCGGCCACGCGCGCA 720
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TGGGTGGCGGGGTCGGGGCTTCGCTACAAATAACAGGAGACGCCCCGTGCTCTGGTAAAT 780
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 ATGTGCCTTTGCCGCGTCTGTCGGTTGGGTTTGGGGGGGGGGCGCGTCTTCCCTTGGTCT 840
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 GATGGCAATGTAACAAATTCTGCAGCGCACAACAACCGACAACGACATCATGATGAGCGT 900
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 ATGTGTTGATAGGTGGGAATCAAGAAAATCGTTTTTTTTGCTTGTAAATTGGCATACGTT 960
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 AAGGATGAGACGCAGCGTTACGTGGTAAAGGCAAATGGTAGGAATGATTGTGTTTAAAGT 1020
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TCAATGAATGGAATTTAGGTCGAGGTAGGCTTTTACTTCCCCTAGTATTAACTTCAAATC 1080
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TCAATTACAACTAATCGCACAGCTCAGCAGTTGAAACATACAGATGCTGTTAAGGAAGAA 1140
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TGCAGGATACTGAGAAGAATTATGGAGCAGGACTTTACCTTTCCCACAATTCAAAACGAT 1200
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 ATGTGGTCTCTAACTAAATGTGGTCGTCCTAAATTCCTGTACTTCTAGACTGAACAGTTC 1260
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CCAACTTCCACCATAGAAGGGTAGTGGGATGTTGGGACTTTTTTATATGCTGCATGTGAG 1320
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TAACCAACCCTATCCCAGAAAGCTGTGGTCTCGGAATTCGAATCCAACAGAAATTTCTCA 1380
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 CAATTTCGAGGACTCTGCGTTCGAGGAGCCACTGAATTGTGATCTTGAGATGAATCCGAA 1440
consensus_7836#1 ------------------------------------------------------------
consensus_7836#0 TAAATCCTTCAAACCACCT 1459
consensus_7836#1 -------------------
|
| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||