These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7839#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1488 fasta sequence [TAAAATAAAAACAGGTCGCA-CCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGATGCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCATCTCGTCAGCGAGTCGTAGA-ATTGGGCAAACCGGGGGTGAAGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTGGACATCCTTGCGGAGGAAAATTTTACCACAACCGGCGACGAATGTACCAACGAGTTGCCCACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACCGTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCTTATCACATCCTGCACCGGACGCCGAAACAGTTCAAAACCAAATCCATACTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCG-TGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATA-TTTCGTATTGCA-GGNGGTGCTTATACTTTGCCGGATACAGCCCCTTCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTGCCTGTGCTTTGAAATAATGGTACTATCATGCTGGGCCTCCCTGCTGTACAAATCGCCCTCCATCATTGGGCCAGGCTAGGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAAAATCCAGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAATTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGCCGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCGTTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATGGAAATCTTTAACAAATACAATTAAATCGAAACGAATAGCATTTCATCTAAGTCGTATAAAA] [+] EMBL CNS08P1B [TAAAATAAAAACAGGTCGCA CCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGATGCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCATCTCGTCAGCGAGTCGTAGA ATTGGGCAAACCGGGGGTGAAGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTGGACATCCTTGCGGAGGAAAATTTTACCACAACCGGCGACGAATGTACCAACGAGTTGCCCACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACCGTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCTTATCACATCCTGCACCGGACGCCGAAACAGTTCAAAACCAAATCCATCCTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCTGTGTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTTTTTTTAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCT ] [+] EMBL CNS08VAT [ AGGTCGCACCCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGATGCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCATCTCGTCAGCGAGTCGTAGACATTGGGCAAACCGGGGGTGAGGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTa ] [+] EMBL BX625198 [ ggCCGGGGGTGAAGTGATCCGCATTACCCTGCATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTGGACATCCTTGCGGAGGAAAACTTTACCACGACCGGCGACGAATGTACCAACGAGTTGCCCACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACCGTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCCTATCACATCCTGCACCGGACGCCGAAACAGTTCAAAACCAAATCCATACTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCG TGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATA TTTCGTATTGCA GGNGGNGCTTATACTTTGCCGGA ] [+] EMBL BX623968 [ ACTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCG TGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTTCGTATTGCANGCGGGTGCTTATACTTTGNCGGATACAGCCCCTTCATT ] [-] EMBL CNS08P1C [ CAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCCGCTGCCGGTCGTACAAACTGCAAAATTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATA TTTCGTATTGCA GGCGGTGCTTATACTTTGCCGGATACAGCCCC TCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTGCCTGTGCTTTGAAATAATGGTACTATCATGCTGGGCCTCCCTGCTGTACAAATCGCCCTCCATCATTGGGCCAGGCTAGGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAAAATCCAGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAATTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGCCGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCGTTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATGGAAATCTTTAACAAATACAATTAAATCGAAACGAATAGCATTTCATCTAAGTCGTATAAAA] [-] EMBL CNS08VAU [ GGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAAAATCCAGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAATTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGCCGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCGTTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATGGAAATCTTTAACAAATACAATTAAATCG AACGAATAGCA TTCAACCAA CCGTAAAA ] consensusID : consensus_7839#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 778 fasta sequence [CCAAGAATCGGCACGAGGCTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGCGGTGCTTATACTTTGCCGGATACAGCCCCTCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTTGCCTGTGCTTTGAAATGATGGTACTATCATGCTGGGCCTCCCTGGNNTGTTACAAATCGGCCTCCATCATTGGGGCCAGGCTTAGGCGTGAAAACGACGGAGGGGCGGAAAAAGCAGCCAGAGAAATCCCAGGGATGTNC] [+] EMBL BX467384 [CCAAGAATCGGCACGAGGCTGCTGCTGACCATCTATCCGCTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACCGTGATGCATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTATGTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACTCCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTACGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCCCTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTGCCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATGCTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGCGGTGCTTATACTTTGCCGGATACAGCCCCTCATTATAGCGGCCATCGTTAGCAGCAGCATTTCCGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTTGCCTGTGCTTTGAAATGATGGTACTATCATGCTGGGCCTCCCTGGNNTGTTACAAATCGGCCTCCATCATTGGGGCCAGGCTTAGGCGTGAAAACGACGGAGGGGCGGAAAAAGCAGCCAGAGAAATCCCAGGGATGTNC] consensusID : consensus_7839#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 199 fasta sequence [TACGTNGATGCAGAATTGNCACGAGGTGTAACGCCTATCACATTCTGCACCGGACGCCCGAAACAGTTCAAAACCAAATCCATACTTGCTGCTGACCATCTATCCNGTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCCGGTGCTTCTTCCTGTGCGATACCTGTGGATGCCATGTGTACTTCATGATCTGNT] [+] EMBL AL697210 [TACGTNGATGCAGAATTGNCACGAGGTGTAACGCCTATCACATTCTGCACCGGACGCCCGAAACAGTTCAAAACCAAATCCATACTTGCTGCTGACCATCTATCCNGTCATCACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCCGGTGCTTCTTCCTGTGCGATACCTGTGGATGCCATGTGTACTTCATGATCTGNT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7839#0 TAAAATAAAAACAGGTCGCACCGATCCGGTCCGGTTGTATTGCGATTCCCTGCGTCCGAT 60 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 GCCAACGCGCCTCACACACTGAACACACACGAAGTCTGGGTGGTGGTGGTGGCTGGGGCA 120 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 TCTCGTCAGCGAGTCGTAGAATTGGGCAAACCGGGGGTGAAGTGATCCGCATTACCCTGC 180 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 ATTCAAGTAAACCGCAAGTAACTGCGCGGCAATATGGATACCAACGAGACGATGTCGGTG 240 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 GACATCCTTGCGGAGGAAAATTTTACCACAACCGGCGACGAATGTACCAACGAGTTGCCC 300 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 ACCGTACAGGAATATCTTGATGGCTTAACACTCCCAATCGCCATAATAATTGCCGCCACC 360 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 GTGCTGCTGAGCATTGGCACGTTTAGCATCTTCTTCAAGAACGCTTATCACATCCTGCAC 420 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 --------TACGTNGATGCAGAATTGNCACGAGGTGTAACGCCTATCACATTCTGCACCG 52 consensus_7839#0 CGGACGCCGAAACAGTTCAAAACCAAATCCATACTGCTGCTGACCATCTATCCGCTCATC 480 consensus_7839#1 ---------------CCAAGAATCGGCACGAGGCTGCTGCTGACCATCTATCCGCTCATC 45 consensus_7839#2 GACGCCCGAAACAGTTCAAAACCAAATCCATACTTGCTGCTGACCATCTATCCNGTCATC 112 * * * ******************* ***** consensus_7839#0 ACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACC-GT 539 consensus_7839#1 ACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCGCGTGCCTTCTTCCTGTGCGATACC-GT 104 consensus_7839#2 ACTCTGTTCGGTGTGGTGTCCATCTCCGTGCCCGGTGC-TTCTTCCTGTGCGATACCTGT 171 ******************************** **** ****************** ** consensus_7839#0 G-ATGC-ATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTAT 597 consensus_7839#1 G-ATGC-ATGTGTACTTCATGATCTGTGCTTACGTTTTCTTCAGCCTGTGCATGCAGTAT 162 consensus_7839#2 GGATGCCATGTGTACTTCATGATCTGNT-------------------------------- 199 * **** ******************* consensus_7839#0 GTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACT 657 consensus_7839#1 GTGGACGGGGAAGATGCGCTTATTAAATCGACCGATTCGCAAAGCTTCTCCCTGCGCACT 222 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTA 717 consensus_7839#1 CCACCGCTGTGCTGCTTCGTGCCGCTGTTCAAACGAGCTCCCGTGACAAAAAATCGGTTA 282 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCC 777 consensus_7839#1 CGGTTCGTGCGTATGCTTATAATGCAGCTGCCGGTCGTACAAACTGCTCTCTTTCTGGCC 342 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTG 837 consensus_7839#1 CTGAACGTAGTGTTTGTGGAGAATTATCCCAACTTTAATCGCATCATCCTATACTTTGTG 402 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATG 897 consensus_7839#1 CCAATGATCGTCATCTCTATTCTGCTCGGTGTGTGGGGATTGAACATTCTCGTGCGAATG 462 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGNGGTG 957 consensus_7839#1 CTCGCTCCACTCTACTCCGACTTGAAGCTGATGGGCAAATATTTCGTATTGCAGGCGGTG 522 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CTTATACTTTGCCGGATACAGCCCCTTCATTATAGCGGCCATCGTTAGCAGCAGCATTTC 1017 consensus_7839#1 CTTATACTTTGCCGGATACAGCCCCT-CATTATAGCGGCCATCGTTAGCAGCAGCATTTC 581 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTT-GCC 1076 consensus_7839#1 CGACTGTGCCTTTCCCAACACACTGCAGGTGCAGAAAAATGCCATTTTTCAACTTTTGCC 641 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 TGTGCTTTGAAATAATGGTACTATCATGCTGGGCCTCCCTGCTGT---ACAAATCGCCCT 1133 consensus_7839#1 TGTGCTTTGAAATGATGGTACTATCATGCTGGGCCTCCCTGGNNTGTTACAAATCGGCCT 701 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CCATCATTGGG-CCAGGCT-AGGCGTGAAACGACGGGGGGGGCGGCAAACACCACCAAA- 1190 consensus_7839#1 CCATCATTGGGGCCAGGCTTAGGCGTGAAAACGACGGAGGGGCGGAAAAAGCAGCCAGAG 761 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 -AATCC--AGCATCTCCTACTTCAACACGAATAGCACAGCTAGGCAAAGCTGATCGTAAA 1247 consensus_7839#1 AAATCCCAGGGATGTNC------------------------------------------- 778 consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 TTTATCTGTGTTTCAGTGTTTTAAATGTGATATCATAAACCACCGTTAATCACTGCCAGC 1307 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 CGGGGAAACGCTTGGCAAGATGTACTCGGGTAGAATCGGACAACAAGCCCGCATCTCTCG 1367 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 TTACATCTTCCCAAGCCGTACACGCTGCTGGCCAGGATGAACTGGTGGTGTATTTCGATG 1427 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 GAAATCTTTAACAAATACAATTAAATCGAAACGAATAGCATTTCATCTAAGTCGTATAAA 1487 consensus_7839#1 ------------------------------------------------------------ consensus_7839#2 ------------------------------------------------------------ consensus_7839#0 A 1488 consensus_7839#1 - consensus_7839#2 - |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||