These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7843#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 715 fasta sequence [CCGCCCACGCGTCCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC-GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT----GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG-CCCGGTGCAGGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGTGGGAGGACAAATCGGCCA] [+] EMBL BM653913 [CCGCCCACGCGTCCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCA ] [+] EMBL BM635402 [ CCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCAGGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGTGGGAGGACA ] [+] EMBL BM637312 [ CCGCCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCA ] [+] EMBL BM640347 [ ccGGTTCGACGTGACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACAT CCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAA ACACAAGAGAAAGTGCATAGTGCATGTATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGTGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGTGATCGAGGCTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGTACAGCTTCATCAACAACAATAGCAGCAAGCGCGTCAG CTAGGACAGACCCGCGTAACGCCACCAACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAAATGCGCGGTCAGGGCAGTGGGAGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCCGGTGCAGGCa ] [+] EMBL BM636141 [ ccGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCAG ] [+] EMBL BM626619 [ ccgATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGC GGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGT GGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTG CCCGGTGCAGGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGT GGAGGACAAATCGGCCA] consensusID : consensus_7843#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 641 fasta sequence [CCGCGGACGCGTGGGGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAAAACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGG] [+] EMBL BM643196 [CCGCGGACGCGTGGGGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAAAACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATGCGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGG] consensusID : consensus_7843#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 564 fasta sequence [CCGGAAATACTTCGTTCACCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGG] [+] EMBL BM640870 [CCGGAAATACTTCGTTCACCAGGTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCCACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAACTAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGCATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGATCACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTATGCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGACTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTCAAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGCGTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAAGATGATGCGGCCACGAAAATCCAGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7843#0 CCGCCCACGC---GTCCGCCAG-GTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCC 56 consensus_7843#2 CCGGAAATACTTCGTTCACCAG-GTTCGACGTAACGTTAGCGATCTGCGCATAGCCGCCC 59 consensus_7843#1 ---------------CCGCGGACGCGTGGGGTAACGTTAGCGATCTGCGCATAGCCGCCC 45 * * * * ****************************** consensus_7843#0 ACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAAC 116 consensus_7843#2 ACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAAC 119 consensus_7843#1 ACCACCGGGGTTAGTTTGCTGAAAGATACATCCAGTCTGCGTGCAAACACATCCCCCAAC 105 ************************************************************ consensus_7843#0 TAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGC 176 consensus_7843#2 TAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAACACACAAGAGAAAGTGCATAGTGC 179 consensus_7843#1 TAAGCTGAACGTTTTGTTGAAAGAATCGAAAAAAAAAACACAAGAGAAAGTGCATAGTGC 165 ************************************ *********************** consensus_7843#0 ATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGAT 236 consensus_7843#2 ATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGAT 239 consensus_7843#1 ATGAATTCTTGATTCAAAGTGAAAGTTGAAAGACACACCCCTTGTGAGGCAGAATACGAT 225 ************************************************************ consensus_7843#0 CACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTAT 296 consensus_7843#2 CACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTAT 299 consensus_7843#1 CACCATCCCGCTGCTGGGAAAGACAGCCCGAACCAAGCTTGTATACGCGTGTGCTCGTAT 285 ************************************************************ consensus_7843#0 GCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGA 356 consensus_7843#2 GCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGA 359 consensus_7843#1 GCGTGTAAAAAAGACAGGGCCAAACGATTGTGTGATACACGGTGGAAAAAGAGATCCAGA 345 ************************************************************ consensus_7843#0 CTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTC 416 consensus_7843#2 CTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTC 419 consensus_7843#1 CTCCCCAACAACACCCAGCGGCACCGGTGGAACCGGTTCCTCGAGATTCGGAATCGATTC 405 ************************************************************ consensus_7843#0 AAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGC 476 consensus_7843#2 AAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGC 479 consensus_7843#1 AAGCGCACAGCTTCATCAACAACAATAGCAGCAAGCGCGACAGACCTAGGACAGACCCGC 465 ************************************************************ consensus_7843#0 GTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAA 536 consensus_7843#2 GTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAA 539 consensus_7843#1 GTAACGCCACCTACCAAGATGCATATTCATCCGAGCTCACCGAACTCCTCCCAGTCGGAA 525 ************************************************************ consensus_7843#0 GATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATG 596 consensus_7843#2 GATGATGCGGCCACGAAAATCCAGG----------------------------------- 564 consensus_7843#1 GATGATGCGGCCACGAAAATCCAGGCCGGATTCCGCGGGTACCGAGTGCGCAAGCAGATG 585 ************************* consensus_7843#0 CGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGGTGCA 656 consensus_7843#2 ------------------------------------------------------------ consensus_7843#1 CGCGGACAGAGCAGTGGCAAGGGTGCCGTCATCGCTTCGGGCGGAATGGTGCCCGG---- 641 consensus_7843#0 GGCGCTGGCTCTGGTTCGGGCACTTCATCGTCCGGCACGGTGGGAGGACAAATCGGCCA 715 consensus_7843#2 ----------------------------------------------------------- consensus_7843#1 ----------------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||