These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7844#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 798 fasta sequence [CCGGTAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC-GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA-GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCG] [+] EMBL BM594526 [CCGGTAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCTAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGATATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTCGGGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTC ] [+] EMBL BM637208 [ ccgAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCCCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACTCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCCCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGATGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTT ] [+] EMBL BM595490 [ ccGGTTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCCCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACTCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGATTAGTGAATCTGGGCAACACGTGCTACATG ] [+] EMBL BM627837 [ ccGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTCGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATC ] [+] EMBL BM585263 [ ccgGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTTTTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAAATGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTCGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGG ] [+] EMBL BM636261 [ ccgGGGGAAAGGAAAGCTTCAAAAACATTGAGGTCAACACGGACGAGGAGCCGATGCTGTTCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCAAAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGCTGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAGAGGACATGAACGAGAACGAGCTAGCGACGGCCTTCGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTC GGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGA GCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCG] consensusID : consensus_7844#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCGATCAATGGTTCGGCGGCACGTTCGACGTGGAGATGAAGTGTACCGAGGCGGAGGATGAGCCGGCGAGCAAATCGAAAGAAAACTTCCTGCAGCTCAGCTGCTTCATTTCCACCGAGGTGAAATACATGCACTCCGGATTGCGATTGAGACTGAAGGAACAGCTGACTAAAATGTCTCCCTCCCTCGGGCGTGATGCTGTTTATTCGAAAACGTCGCTGATCAGCCGTCTGCCGGCCTACCTGACGGTCCAGTTCGTCCGGTTCCAGTACAAGGGCAAGGAGGGCATCAATGCGAAGGTGCTGAAGGACATCAAGTTCCCGATCGAGTTCGACGCGTACGAGCTGTGCACGCCCGAGCTGCAGGAAAAGCTGACCCCGATGCGCACCAAATTCAACGAGATCGCAAACCGGAGGTCGAGCGTACGCTCAAGGGCAAGAACAAATCGAAGGCCGAGCTGGAAAAGGAGAAACCCAAGACTGTTCCCCAACC] [+] EMBL BM584578 [CCGCCCACGCGTCCGCCCACGCGTCCGGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCGATCAATGGTTCGGCGGCACGTTCGACGTGGAGATGAAGTGTACCGAGGCGGAGGATGAGCCGGCGAGCAAATCGAAAGAAAACTTCCTGCAGCTCAGCTGCTTCATTTCCACCGAGGTGAAATACATGCACTCCGGATTGCGATTGAGACTGAAGGAACAGCTGACTAAAATGTCTCCCTCCCTCGGGCGTGATGCTGTTTATTCGAAAACGTCGCTGATCAGCCGTCTGCCGGCCTACCTGACGGTCCAGTTCGTCCGGTTCCAGTACAAGGGCAAGGAGGGCATCAATGCGAAGGTGCTGAAGGACATCAAGTTCCCGATCGAGTTCGACGCGTACGAGCTGTGCACGCCCGAGCTGCAGGAAAAGCTGACCCCGATGCGCACCAAATTCAACGAGATCGCAAACCGGAGGTCGAGCGTACGCTCAAGGGCAAGAACAAATCGAAGGCCGAGCTGGAAAAGGAGAAACCCAAGACTGTTCCCCAACC] consensusID : consensus_7844#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 409 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTCGGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAG] [+] EMBL BM623737 [CCGCGGACGCGTGGGCGGACGCGTGGGCTTTGATACTCCGGCCGGTTTAGTGAATCTGGGCAACACGTGCTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAGCTGCGCGAAGCGCTGAAGGAATACAAGGAGGAGGCGGGCGGTGCGTCGGGGCTGGCGGGGCTCGCCTCCCCGCAGGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATGGAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGAACGAGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCCCCGAGCAG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7844#0 CCGGTAATTCGGTTGGGTTTGTTTGCAAAACTCTGTGCTCAACTTTTGTCGCCCAAATTT 60 consensus_7844#2 ------------------------------------------------------------ consensus_7844#1 ------------------------------------------------------------ consensus_7844#0 TTTCACACCTGCCAGCGGGAAAACGTTAGGAAAAATGCCTTCATTTACGGTGAACGTGAA 120 consensus_7844#2 ------------------------------------------------------------ consensus_7844#1 -------------------------------------CCGCCCACGCGTCCGCCCACGCG 23 consensus_7844#0 ATGGGGAAAGGAAAGCTTCAAAAACAT-TGAGGTCAACACGGACGAGGAGCCGATGCTGT 179 consensus_7844#2 ------------------------------------------------------------ consensus_7844#1 TCCGGTTCCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACGCGA 83 consensus_7844#0 TCAAAGCCCAGCTGTTCGCGCTGACCGGTGTCCAGCCGGACCGACAAAAGGTGCTCTGCA 239 consensus_7844#2 ------------------------------------------------------------ consensus_7844#1 ACGAGTGCTGGTCCGAGCTGCTGA---------AGATGCTACAGCAGAAGCTGCCGGCCC 134 consensus_7844#0 AAGGCATTAGCCTGAAGGATGAGGAGTGGAACATGCCGATCAAGAATGGCGCCACGCTGC 299 consensus_7844#2 ------------------------------------------------------------ consensus_7844#1 AGAAGCTTGCCCCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCGATCA-ATGGTTCGGC 193 consensus_7844#0 TGCTGCTCGGCACAAAGGAAGAAGTGCCCCAGGAGCCGGTGGAAAAGCCGAAATTCATAG 359 consensus_7844#2 ------------------------------------------------------------ consensus_7844#1 GGCACGTTCGACGTGGAGATGAAGTGTACC--GAGGCGGAGGATGAGCCGGCGAGCAAAT 251 consensus_7844#0 AGGACATGAACGAGAACGAGCTAGCGACGGCCTTTGATACTCCGGCCGGTTTAGTGAA-T 418 consensus_7844#2 ---CCGCGGACGCGTGGGCGGACGCG-TGGGCTTTGATACTCCGGCCGGTTTAGTGAA-T 55 consensus_7844#1 CGAAAGAAAACTTCCTGCAGCTCAGCTGCTTCATTTCCACCGAGGTGAAATACATGCACT 311 ** * * ** ** ** * ** * * consensus_7844#0 CTGGGCAACACGTG---CTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAG 475 consensus_7844#2 CTGGGCAACACGTG---CTACATGAACGCAACGCTGCAGTGTCTCCGATCGGTGCGCGAG 112 consensus_7844#1 CCGGATTGCGATTGAGACTGAAGGAACAGCTGACTAAAATGTCTCCCTCCCTCGGGCGTG 371 * ** * ** ** * **** ** * ******* * * *** * consensus_7844#0 CTGCGCGAAGCGCTGAAGGAATAC-AAGGAGGAGGCGGGCGGTGCGTCGG---GGCTGGC 531 consensus_7844#2 CTGCGCGAAGCGCTGAAGGAATAC-AAGGAGGAGGCGGGCGGTGCGTCGG---GGCTGGC 168 consensus_7844#1 ATGCTGTTTATTCGAAAACGTCGCTGATCAGCCGTCTGCCGGCCTACCTGACGGTCCAGT 431 *** * ** * * ** * * * *** * * * * * consensus_7844#0 GGGGCTCGCCTCCCCGCA--GGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATG 589 consensus_7844#2 GGGGCTCGCCTCCCCGCA--GGCCATTACCATGTCGATGAAGAACCTGTTCGAGGACATG 226 consensus_7844#1 TCGTCCGGTTCCAGTACAAGGGCAAGGAGGGCATCAATGC-GAAGGTGCTGAAGGACATC 490 * * * * ** *** * * ** *** *** ** * ******* consensus_7844#0 GAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTT- 648 consensus_7844#2 GAGCGCCGGAACGATTCGATCACGCCGGTCCTGTTTCTGCAGCGGTTGCACATCGCGTT- 285 consensus_7844#1 AAGTTCCCGATCGAGTTCGACGCGTACGAGCTGTGCACGCCCGAGCTGCAGGAAAAGCTG 550 ** ** ** *** * * ** * **** ** * **** * * consensus_7844#0 --CCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACG--CGAACG 704 consensus_7844#2 --CCCGAACTTTTCGCAGACGGGCGAGAACGGCACGTACCGGCAGCAGGACG--CGAACG 341 consensus_7844#1 ACCCCGATGCGCACCAAATTCAACGAGATCG---CAAACCGGAGGTCGAGCGTACGCTCA 607 ***** * * ***** ** * ***** * * ** ** * consensus_7844#0 AGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCC 764 consensus_7844#2 AGTGCTGGTCCGAGCTGCTGAAGATGCTACAGCAGAAGCTGCCGGCCCAGAAGCTTGCCC 401 consensus_7844#1 AGGGCAAGAACAAATCGAAGGCCGAGCTGGAAAAGGAGAAACCC------AAGACTGTTC 661 ** ** * * * * * *** * ** ** ** *** ** * consensus_7844#0 CCCGAGCAGAGCGTGAAGCACAGCTCGTTCATCG 798 consensus_7844#2 CC-GAGCAG------------------------- 409 consensus_7844#1 CCCAACC--------------------------- 668 ** * * |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||