These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7845#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1207 fasta sequence [GCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACG-AGCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACA-CCGGTCTCGGTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAG-ACGACGACCCACGCCGACCGCATGCGCCAGCAGC-AGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTTTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAC] [+] EMBL CNS09G8X [GCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACG AGCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACA CCGGTCTCGGTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGG ] [+] EMBL CNS09HTW [ TCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAATCCCTATTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAAAGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACA CCGGTCTCGGTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCACTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAATCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACA CAAGAACGACGACCCACGCCGACCGCATGCGCCA CAGCAAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCG ] [+] EMBL CNS09FCC [ AGATGTTTCATCGTCGGCGCTGACAATGTCGGCTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGGCAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACA CCGGTCTCGGTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAAT CTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTT CAGGC ] [+] EMBL CNS08DUM [ ACCATGATGCGCAAGGCCATTCGCGGGCATCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCTCCGCTCGAGGTCGTCATCCCGGCCCAGAACA CCGGTCTCGGTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGGCATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGTTTTTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACACAAAG ACGA ] [-] EMBL CNS09HTX [ GCGGGCTTCTGGAGAACAACCAGAACCTGGAGAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGAAAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGATCGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACT CCGGTCTCGGTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTTTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTTTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGAGGCTGGCTTCGGTGCCGAACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCACTGCCACGGCAACAAATGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAATCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAG ACGACGACCCACGCCGACCGCATGCGCCAGCAGC AGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTTTGTGAAACCAACTGAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAG ] [-] EMBL CNS08DUN [ AACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGCCGAGATCCGCGAAAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGAAC TTCCGCTCGAGGTCGTCATCCCGGCCCAGAACA CCGGTCTCGGTCCGGACAAGGTAAAAGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGGCATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCAGATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTACGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAG ACGACGACCCACGCC ] [-] EMBL CNS08Z3J [ GAGGTCGTCATCCCGGCCCAGAACACCCGGTTTTTTTCCGGACAAGGTCGGCGCTTCCGAGGCCACGCTGCTCAACATTCTGAACATCTCGCCGTTCTCGTACGGTCTGCAGATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGCGGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCATCCTTGCTTCCGTGTCGCTCCAGATCGGATACCCGAAGCTGGCTTCGGTGCCGAACAGCATTGCCAACGGTTTCCGCAACCTGCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTTCATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACAACTGCTTCCGCTGCCGCCCCAGCTGCCAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATATGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAG ACGACGACCCACGCCGACCGCATGCGCCAGCAGC AGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGGCACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACACGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTCTGTGAAACCAACTAAAGAGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAATCCGGAAAC] consensusID : consensus_7845#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 357 fasta sequence [CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTAGTGTTTAAATTTAATTTAATTTAAATCTTTTTCTTTTCCGGTGCCTTCCTCTTCTTTCCCACCAAGGAATTAGGCACCGTGATGCGATCGCTAGGCCAGAACCCCACAGAAGCTGAATTGCAAGACATGATCAACGAAGTCGACGCGGACGGTAACGGCACGATCGATTTCCCCGAGTTTCTAACAATGATGGCTCGTAAAATGAAGGACACGGACAGTGAAGAGGAAATCCGGGAGGCATTCCGAGTCTTCGACAAGGACGGCAACGGTTTTATCTCTGCAGCTGAGCTGCGCCACGTCATGACTAATCTGGGCGAGAA] [+] EMBL BM604111 [CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTAGTGTTTAAATTTAATTTAATTTAAATCTTTTTCTTTTCCGGTGCCTTCCTCTTCTTTCCCACCAAGGAATTAGGCACCGTGATGCGATCGCTAGGCCAGAACCCCACAGAAGCTGAATTGCAAGACATGATCAACGAAGTCGACGCGGACGGTAACGGCACGATCGATTTCCCCGAGTTTCTAACAATGATGGCTCGTAAAATGAAGGACACGGACAGTGAAGAGGAAATCCGGGAGGCATTCCGAGTCTTCGACAAGGACGGCAACGGTTTTATCTCTGCAGCTGAGCTGCGCCACGTCATGACTAATCTGGGCGAGAA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7845#0 GCGCATACGCTAATCTGTCAATAGCGACCGCTTTGTTCTTAAATTTCTTTACGAGCCCTA 60 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 TTATCACATCAAGATGGGTAGGGAGGACAAAGCAACCTGGAAGTCCAACTATTTCCTAAA 120 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 AGTCGTGCAACTGCTCGACGAATACCCGAGATGTTTCATCGTCGGCGCTGACAATGTCGG 180 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CTCCCGTCAGATGCAAACCATCCGTATGTCGCTCCGCGGTTCGGCCATCGTGCTGATGGG 240 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CAAGAACACCATGATGCGCAAGGCCATCCGCGGGCATCTGGAGAACAACCAGAACCTGGA 300 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 GAAGCTGCTCAACCACATCAAGGGCAACGTGGGCTTCGTGTTCACCAAGGGCGATCTGGC 360 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CGAGATCCGCGACAAGCTGACCGAGAGCAAGGTGCGTGCCCCGGCCCGTGCCGGTGCGAT 420 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CGCCCCGCTCGAGGTCGTCATCCCGGCCCAGAACACCGGTCTCGGTCCGGACAAGGTCGG 480 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CGCTTCCGAGGCCACGCTGCTCAACATGCTGAACATCTCGCCGTTCTCGTACGGTCTGCA 540 consensus_7845#1 ----------------CCGCCCACGCGTCCGTTTTTTTTTTTTTTTTTTTTTAGTGTTTA 44 * ** ** * * * * ** * * ** * * consensus_7845#0 GATCCAGCAGGTGTACGATTCGGGCTCGATCTTCTCGCCGGAAATCCTCGACATCAAGGC 600 consensus_7845#1 AATTTAAT-----TTAATTTAAATCTTTTTCTTTTCCGGTGCCTTCCTCTTCTTTCCCAC 99 ** * * ** ** **** ** * ***** * * * consensus_7845#0 GGAGGATCTGCGCGCCAAGTTCCAGGCTGGAGTCGCCAACCTGGCTGCCGTGTCGCTCCA 660 consensus_7845#1 CAAGGAATTAGGCACCGTGATGCGATCGCTAGGCCAGAACCCCACAGAAGCTGAATTGCA 159 **** * ** ** * * * * ** * **** * * * * ** consensus_7845#0 GATCGGATACCCGACGCTGGCTTCGGTGCCGCACAGCATTGCCAACGGTTTCCGCAACCT 720 consensus_7845#1 AGAC--ATGATCAACGAAGTCGACGCGGACG-GTAACGGCACGATCGATTTCCCCGAGTT 216 * ** * *** * * ** * ** * * * * ** ***** * * * consensus_7845#0 GCTGGCCATTGCCGCCGTCACCGAGGTTGAGTTCAAGGAGGCCGAAACGGTCAAGGAGTT 780 consensus_7845#1 TCTAACAATGATGGCTCGTA---AAATGAAGGACACGGACAGTGAAG-----AGGAAATC 268 ** * ** ** * * * ** ** *** *** * * * * consensus_7845#0 CATCAAGGATCCGAGCAAGTTCGCCGCTGCCACGGCAACGACTGCTTCCGCTGCCGCCCC 840 consensus_7845#1 CGGGAGGCATTC---CGAGTCTTCGACAAGGACGGCAACGGTTTTATCT-CTGCAGCTG- 323 * * * ** * * *** * * ********* * ** **** ** consensus_7845#0 AGCTGC-CAAGGCTGAGGAGAAGAAGGTGGAGTCCGAGTCCGAGGATGAGGATGAGGATA 899 consensus_7845#1 AGCTGCGCCACGTCATGACTAATCTGGGCGAGAA-------------------------- 357 ****** * * * * ** ** *** consensus_7845#0 TGGGCTTCGGTCTGTTCGATTAAATGCGACAGCAAGACGACGACCCACGCCGACCGCATG 959 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CGCCAGCAGCAGGTCGGTTGTTCCCAGACGGTGTGGTTCCCTGAGCTATATCTACTTTGG 1019 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CACGGACGTTGTAGCTGCGAGCGTATACTCGTCAAGGCTGGGGACGGCCCAATGGCGACA 1079 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CGCTGGCCATTCTTCTTGTTACGTACCAAAATACGTATTTTTTTGTGAAACCAACTGAAG 1139 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 AGCAAAGCACATTAAAAGTAACACAAAAGCCGGTGAGTCAGAATCGCAAGAGGAAACAAT 1199 consensus_7845#1 ------------------------------------------------------------ consensus_7845#0 CCGGAAAC 1207 consensus_7845#1 -------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||