These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7854#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 1030 fasta sequence [CCGCTCGGCCCGCACGGTCATAAGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATTTGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGGTACAG-ATACGGGCCATTCGG-TGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAAAAAATGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTCTTCTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATGGTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTGGTGAACGCAGTATTTCTAGTGGCCCTTTGCTTCAGTATTACCATCGAGGCGTGCAAACGATTCATCGAGGTGGAGCACATCCACGAGCCGGAGCTGCTAATTGCGGTCGGTGTGATCGGCCTGTTGGTGAATCTGCTCGGCCTTTGCCTATTGCACAAGCACGGTGGAGGAGGCCACATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAAAAAAA] [+] EMBL BM593459 [CCGCTCGGCCCGCACGGTCATAAGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATTTGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGGTACAG ATACGGGCCATTCGG TGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAAAAAATGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTCTTCTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGA ] [+] EMBL BM586976 [ ccGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATTTGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGGTACAG ATACGGGCCATTCGG TGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAA ] [+] EMBL AGA282866 [ CAGTATACGGGCCATTCGGTTGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAGCTGTAGACGCGCAGTGTGCAATAGCAGTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCGAATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATACACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCACCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTG ] [-] EMBL AGA281244 [ ACAACAGTGGTGAGGCGCTGATCCCGCAGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAACGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAAAAAATGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTKTTKTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATGGTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTGGTGAACGCAGTATTTCTAGTGGCCCTTTGCTTCAGTATTACCATCGAGGCGTGCAAACGATTCATCGAGGTGGAGCACATCCACGAGCCGGAGCTGCTAATTGCGGTCGGTGTGATCGGCCTGTTGGTGAATCTGCTCGGCCTTTGCCTATTGCACAAGCACGGTGGAGGAGGCCACATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAAAAAAA] [+] EMBL BM618617 [ ccgGCCGCCTGCTGACGGTGATGACGCTGACGGTGTTTTTCTTCTTCGTCGAAATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCTCGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATGGTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTG ] consensusID : consensus_7854#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 640 fasta sequence [CCGCCCACGCGTCCGATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCAGCCGGAGTTTGTCGAGATCGAAGCGCTGAACAGCTATTCGGGTTCGGACGGATTTTCGAACAGCTTGAATGGCAGTGCGACACAGGACTGCTGTGCCCTCGACTGTCCGACGACGGACGAGAGTAGTTGTATCAAAGCTACATGCTGCCAAAACAACAATAACATTAAGCCGGTGGTGGTAATCGATAAGGGTGCGGCTGGCGGCACCAAGGAACCGTCCGGCAGTAGTAGCGCCTACGAAGGCGACCAGCCGGCAGGGTTGA] [+] EMBL BM588060 [CCGCCCACGCGTCCGATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCAGCCGGAGTTTGTCGAGATCGAAGCGCTGAACAGCTATTCGGGTTCGGACGGATTTTCGAACAGCTTGAATGGCAGTGCGACACAGGACTGCTGTGCCCTCGACTGTCCGACGACGGACGAGAGTAGTTGTATCAAAGCTACATGCTGCCAAAACAACAATAACATTAAGCCGGTGGTGGTAATCGATAAGGGTGCGGCTGGCGGCACCAAGGAACCGTCCGGCAGTAGTAGCGCCTACGAAGGCGACCAGCCGGCAGGGTTGA] consensusID : consensus_7854#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 572 fasta sequence [CCGCCCACGCGTCCGATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAATGAAAACAAATCATTCATGTATCAGCAGAACGGTACGGCGGCGAAAAAGACTACCCACCACGGACACTCGCACGACTCCTCGCAGATGAACATGCGGGGAGCGTTCCTGCACGTGCTCAGCGATGCGCTCGGCAGCGTGGTGGTAATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAAGATCGCCGAGCGGGTGAAGGAGT] [+] EMBL BM622975 [CCGCCCACGCGTCCGATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAACACGGACGACAATGAAAACAAATCATTCATGTATCAGCAGAACGGTACGGCGGCGAAAAAGACTACCCACCACGGACACTCGCACGACTCCTCGCAGATGAACATGCGGGGAGCGTTCCTGCACGTGCTCAGCGATGCGCTCGGCAGCGTGGTGGTAATCATAAGTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGTCGGTGCTGCTGGTGGCGCTCATCCTCAACTCGGTGTGGCCGCTGCTGCGCGAATCGGCCCTCATTCTGCTGCAGACCGTGCCGACCCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAAGATCGCCGAGCGGGTGAAGGAGT] consensusID : consensus_7854#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 273 fasta sequence [TCCCCCCGAGGTTAATGTGGCGCTGCTGCGCGAATCGGCCTCATTCTGCTGCAGACGTGCCGACCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCA] [+] EMBL AL934902 [TCCCCCCGAGGTTAATGTGGCGCTGCTGCGCGAATCGGCCTCATTCTGCTGCAGACGTGCCGACCACATACAGGTCGATGCGATCCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTGGCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACATCCGCTGCCGCAACCTGTCCGAGTACATGAAGATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGGCATCCACTCGACCACGATCCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7854#1 ------------------------------------------------------------ consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ------------------------------------------------------------ consensus_7854#0 CCGCTCGGCCCGCACGGTCATAAGCTCGCGTGTGGTTTACGGGCTTCCGGGAGGGGCATT 60 consensus_7854#1 ------------------------------------------------------------ consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ---------------------------------------------CCGCCCACGCGTCCG 15 consensus_7854#0 TGGACGGGTGGCGTGTGTTGTACAAAGGGTACAGGGTACGGAATCTGGCTCTCGGCGTGG 120 consensus_7854#1 ------------------------------------------------------------ consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ATTGGACATTCGCACGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCAT 75 consensus_7854#0 TACAGATACGGGCCATTCGGTGTGAAAATTCTGCCAAAGTGTTGGAAAATCGTTGCGTAG 180 consensus_7854#1 ------------------------------------------------------------ consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 GGCAACCTGGGCAACACGGACGACAATGAAAACAAATCATTCATGTATCAGCAGAACGGT 135 consensus_7854#0 CTGTAGACGCGCAGTGTGCAATAGCA-GTGAGCTGCGCGTGTGTGTGTGTGAATCGTCCG 239 consensus_7854#1 ------------------------------------------------------------ consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ACGGCGGCGAAAAAGACTACCCACCACGGACACTCGCACGACTCCTCGCAGATGAACATG 195 consensus_7854#0 AATCCGATGCAATGATCGTGTAACAGCACTTGACGACGCCGCATTCTAACGGCGATCATA 299 consensus_7854#1 ------------------------------------CCGCCCACGCGTCCG--ATCATAA 22 consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 CGGGGAGCGTTCCTGCA--CGTGCTCAGCGATGCGCTCGGCAGCGTGGTGGTAATCATAA 253 consensus_7854#0 CACTGAACATCCCGACATTCATTCTAATTCACACACCACCCATACTAGACTTGCTCTGCA 359 consensus_7854#1 GTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGT 82 consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 GTGCATTGATTGTTAAGTTTACCGACTGGAAGTACAAGCTGTACATGGACCCGGCCCTGT 313 consensus_7854#0 CCCTTCTTCCCGCTGGAGTTGCCACAAACACAAACAACAGTGGTGAGGCGCTGATCCCGC 419 consensus_7854#1 CGGTG----CTGCTGGTGGCGCTCATCCT--CAACTCGGTGTGGCCGC-TGCTGCGCGAA 135 consensus_7854#3 ----------------------TCCCCCC--GAGGTTAATGTGGC-GC-TGCTGCGCGAA 34 consensus_7854#2 CGGTG----CTGCTGGTGGCGCTCATCCT--CAACTCGGTGTGGCCGC-TGCTGCGCGAA 366 consensus_7854#0 AGGGAAAATTCATTTGTAGTGACGAAATTAGGGAGTACGAAAAGCAGCGTGGTACACGAA 479 * ** ** ** * * **** consensus_7854#1 T-CGGCCCTCATT-CTGCTGCAGACCGTGCCGACCCACATACAGG-----TCGATGCGAT 188 consensus_7854#3 T-CGGCC-TCATT-CTGCTGCAGAC-GTGCCGACC-ACATACAGG-----TCGATGCGAT 84 consensus_7854#2 T-CGGCCCTCATT-CTGCTGCAGACCGTGCCGACCCACATACAGG-----TCGATGCGAT 419 consensus_7854#0 CGCCGCAGACAGCACCGAAACACAACGCAACCACACAGCAATGGCCAAATTCAGTGGGAA 539 * ** ** * * ** * * * ** * * * ** ** ** consensus_7854#1 CCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTG 248 consensus_7854#3 CCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTG 144 consensus_7854#2 CCAGCGCCGCCTGCTGGAGAAGGTGGACGGTGTGCTGGCGGTGCACGAGTTCCACGTGTG 479 consensus_7854#0 AAAATGCCGCCTGCTGACGGTGATGA------CGCTGACGGTGTTTTTCTTCTTCGTCGA 593 * *********** * * ** **** ***** *** *** consensus_7854#1 GCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACAT---CCGCTGCCGCAACCTGTC 305 consensus_7854#3 GCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACAT---CCGCTGCCGCAACCTGTC 201 consensus_7854#2 GCAGCTCGCCGGCGACCGTATCATCGCGTCGGCCCACAT---CCGCTGCCGCAACCTGTC 536 consensus_7854#0 AATCGTCGTCGGCTATCTGACCAACTCGATGGCCCTGGTGGCCGACAGTTTTCACATGCT 653 *** **** * * * ** * ** ***** * * * * ** ** consensus_7854#1 CGAGTACATG--------AA-GATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGG 356 consensus_7854#3 CGAGTACATG--------AA-GATCGCCGAGCGGGTGAAGGAGTTCTTCCACAATGAAGG 252 consensus_7854#2 CGAGTACATG--------AAAGATCGCCGAGCGGGTGAAGGAGT---------------- 572 consensus_7854#0 CGGTGACATAGCGGCGCTAGTGATTTCCTTCCTGTCGATTAAGATGTCGCCAAAGAAATG 713 ** **** * *** ** * * ** ** consensus_7854#1 CATCCACTCGACCACGATCCAGCCGGAGTTTGTCGAGATCGAAGCGCTGAACAGCTATTC 416 consensus_7854#3 CATCCACTCGACCACGATCCA--------------------------------------- 273 consensus_7854#2 ------------------------------------------------------------ consensus_7854#0 GTCCAAAAACACGTTCGGTTGGGCGCGGGCGGAAGTGCTCGGTGCGCTGGTGAACGCAGT 773 consensus_7854#1 GGGTTCGGACGGATTTTCGAACAGCTTGAATGGCAGTGCGACACAGGACTGCTGTGCCCT 476 consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ------------------------------------------------------------ consensus_7854#0 ATTTCTAGTGGCCCTTTGCTTCAGTATTACCATCGAGGCGTGCAAACGATTCATCGAGGT 833 consensus_7854#1 CGACTGTCCGACGACGGACGAGAGTAGTTGTATCAAAGCTACATGCTGCCAAAACAACAA 536 consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ------------------------------------------------------------ consensus_7854#0 GGAGCACATCCACGAGCCGGAGCTGCTAATTGCGGTCGGTGTGATCGGCCTGTTGGTGAA 893 consensus_7854#1 TAACATTAAGCCGGTGGTGGTAATCGATAAGGGTGCGGCTGGCGGCACCAAGGAACCGTC 596 consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ------------------------------------------------------------ consensus_7854#0 TCTGCTCGGCCTTTGCCTATTGCACAAGCACGGTGGAGGAGGCCACATTGGACATTCGCA 953 consensus_7854#1 CGGCAGTAGTAGCGCCTACGAAGGCGACCAGCCGGCAGGGTTGA---------------- 640 consensus_7854#3 ------------------------------------------------------------ consensus_7854#2 ------------------------------------------------------------ consensus_7854#0 CGGTGGTGGACTCTCGCAGGCAAAGCAGATAAGCGGCGGTTCGCATGGCAACCTGGGCAA 1013 consensus_7854#1 ----------------- consensus_7854#3 ----------------- consensus_7854#2 ----------------- consensus_7854#0 CACGGACGACAAAAAAA 1030 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||