These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7856#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1582 fasta sequence [CCGCGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTCCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATTTTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCTTCTTTGAGCGTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGATAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGAATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCAGTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTGATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTAGAATAAAAATCTATTCACTTGTTACAATTCTCACAGTATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTCGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCA-ATTAGCAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAAACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATGATATATTATATTCCGATAGTAAATAATAAAATT] [+] EMBL BM627176 [CCGCGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTCCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATTTTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCTTCTTTGAGCGTTGATTTGTTATAAT ] [+] EMBL BX614639 [ CGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGTAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATTTTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCTTCTTTGAGCGTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGATAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGAATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCAGTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGAT ] [+] EMBL BX626527 [ GTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGATAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGAATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCAGTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGNGGATTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGNTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGNAATACAGAAATATATATAT ] [+] EMBL BX623892 [ ATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAGAAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTGATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTAGAATAAAAATCTATTCACTTGTTACAATTCTCACAGTATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTCGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCA ATTAGCAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAAACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATGATATATTATATTCCGATAGTAAATAATAAAATT] [+] EMBL BX620910 [ TTTAATCTTTAAAAGATAATTATTAAAACATAAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCATTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTGATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTAGAATAAAAATCTATTCACTTGTTACAATTCTCACAGTATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTCGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCA ATTAGCAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAAACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATGATATATTATATTC ] [+] EMBL BX621054 [ ATTCTCACAGGATCTGGTTAACTAAAATGATACCAATTTTAAACCTTGATTCGATGTATGAACGTCGTCTGGNAGATGTGATTCGACGTGAAAATAGGCTATAGCGGATCGAACTATGTNGAAATCATAGTAATTTGTAACAACAAGCAAGACGAGACGATGAGCAAGAATCANACAATACAAACAAACAATACTCCACATTAGNAAAGGCTAAAATTCACTGCTGTATACGTTTTGAANTTCTACATCATGACTGTCGATTAAACATATCNTGATCACATTTCNAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGATGTCAAATATTAACAC ] consensusID : consensus_7856#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 668 fasta sequence [CCGATACGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCATGTGACGAAAGAGTCCATAAGGACCAAAGTCACTATAATTCTTTGACAGACAGACAGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTGCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAAAAAACGGAAAAAACGT] [+] EMBL BM643083 [CCGATACGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTTCATGTGACGAAAGAGTCCATAAGGACCAAAGTCACTATAATTCTTTGACAGACAGACAGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTGCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAAAAAACGGAAAAAACGT] consensusID : consensus_7856#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 182 fasta sequence [AAATCAATTCACTGGGAACAATCCCCACAGTACCCGGGTAACTAAAATGATACCAATACAAAACCTGGATTCGATGGAGGAACGTCGTCCGGCAGAAGTGATTCGACGTGAAAATAGGGTAAAGCGGAACGAACTATGTCGAAATCATAGTAAATTGTAACAACAAGCAAGAAGAGACGATG] [+] EMBL BX615649 [AAATCAATTCACTGGGAACAATCCCCACAGTACCCGGGTAACTAAAATGATACCAATACAAAACCTGGATTCGATGGAGGAACGTCGTCCGGCAGAAGTGATTCGACGTGAAAATAGGGTAAAGCGGAACGAACTATGTCGAAATCATAGTAAATTGTAACAACAAGCAAGAAGAGACGATG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7856#0 CCGCGGTCTGTTCCCGAGCTACGTGGATTCGGAGATACGCGGTTTTCTAAATTTGACAAT 60 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTTCCCAAAGCGAACTAATTTTCTT 120 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CTTTGTCAAAAGCTTTAAAGTTATCTTTGTTTAAACCGCTATAAAGCCGTAAATTTCTAA 180 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ATTTCCTGCATGAGTCGTATTAAATAAATAGTAAAGTGTATAAAAGTATTAAATTTAATC 240 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 AAAGGTATAAAGTTTTCGAATGTATTTGGCTGAGAAACGTGATCTTTTACTTTCGCGGAT 300 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ATTCGGGTTACGTGGATGGCCCAGGAACGCATAAATTCCTTATCTCGGGAGCAGACTGTA 360 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TATAGTTCAAAATGACTAAAAGAAGAATCGTATCGAATTGTTCCTTCTTACGATTGGAGA 420 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ATGTGTCCTATAATGCTATTGGAACAAATAAACATTAAACAAATCAATTAGTTTATCTAG 480 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 CAACAACTACAAAAACAGTAACATTGGATATTTCTTCACAATGATCTGGCAAGATTATGA 540 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TAAAACCAGTTCTTGTGCCAGAAATTTCTGAGGGAGAAAACGGAAAAAAACGTTCCAATT 600 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TTGAAAAACATTCAAACAATTTTTAACAGAATGTATACAATCGTAAATACATCATACGCT 660 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TCTTTGAGCGTTGATTTGTTATAATGTTTCGTTACGATGAAATATAGATCTTTCAGTAGA 720 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 TAAACCTGAGGGAAATATGTTGATAATGAGGAATGATTTTTCAAACTTGATCTAAGAAGA 780 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 -------------------CCGATACGGTCTGTTCCCGAGCTACGTGGATTCGGAGATAC 41 consensus_7856#0 ATATTAATAGATTTAAACTGAAACAAATAGTGTATGCGACAAGCAAAGATGTTAACAGCA 840 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 GCGGTTTTCTAAATTTGACAATCCATAAGTCAATTCAGTACAATTTGCTTCTCGAATTTT 101 consensus_7856#0 GTCAAGATGGTAACTAAATTATATACCCATTAAAATCAAATTAATCTTAAGAATGTACAG 900 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 CCCAAAGCGAACTAATTTTCTTCATGTGACGAAAGAGTCCATAAGGACCAAAGTCACTAT 161 consensus_7856#0 AAATGTTGTGTCTTTATTTACGAAGTGGATTTAATCTTTAAAAGATAATTATTAAAACAT 960 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 AATTCTTTGACAGACAGACAGAACTAATTTTCTTCTTTGTCAAAAGCTTTAAAGTTATCT 221 consensus_7856#0 AAAATTGTCAATATTCACCGAGGATGCCATGCTCTCCAAATATTATTGAATTAAACTTCA 1020 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 TTGTTTAAACCGCTATAAAGCCGTAAATTTCTAAATTTCCTGCATGAGTCGTATTAAATA 281 consensus_7856#0 TTTTATATTGGAAAAGTCAACAATTCAATTTCATGTAATACAGAAATATATATATCCGTG 1080 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 AATAGTAAAGTGTATAAAAGTATTAAATTTAATCAAAGGTATAAAGTTTTCGAATGTATT 341 consensus_7856#0 ATCCGTACAATTAGAGGTTTTAGTTGTTAATGTTACTCTTTAAACCGATTTTTAACTGTA 1140 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 TGGCTGAGAAACGTGATCTTTTACTTTCGCGGATATTCGGGTTACGTGGATGGCCCAGGA 401 consensus_7856#0 GAATAAAAATCTATTCACT-TGTTACAATTCTCACAGTATCTGGT-TAACTAAAATGATA 1198 consensus_7856#2 ------AAATCAATTCACT-GGGAACAATCCCCACAGTACCCGGG-TAACTAAAATGATA 52 consensus_7856#1 ACGCATAAATTGCTTATCTCGGGAGCAGACTGTATATAGTTCAAAATGACTAAAAGAAGA 461 **** ** ** * ** * * * ******* * * consensus_7856#0 CCAATTTTAAA-----CCTTGATTCGATGTATGAACGTCGTCTGGCAGATGTGATTCGAC 1253 consensus_7856#2 CCAATACAAAA-----CCTGGATTCGATGGAGGAACGTCGTCCGGCAGAAGTGATTCGAC 107 consensus_7856#1 ATCGTATCGAATTGTTCCTTCTTACGATTGGAGAATGT-GTCCTATAATGCTATTGGAAC 520 * ** *** * **** *** ** *** * * * ** consensus_7856#0 G--TGAAAATAGGCTATAGCGG--ATCGAACTATGTCGAAATCATAGTAATTTGTAACAA 1309 consensus_7856#2 G--TGAAAATAGGGTAAAGCGG--AACGAACTATGTCGAAATCATAGTAAATTGTAACAA 163 consensus_7856#1 AAATAAACATTAAACAAATCAATTAGTTTATCTAGCAACAACTACAAAAAACAGTAACAT 580 * ** ** * * * * * * ** * * ** ****** consensus_7856#0 CAAGCAAGACGAGACGATGAGCAAGAATCAAACAATACAAACAAACAATACTCCAATTAG 1369 consensus_7856#2 CAAGCAAGAAGAGACGATG----------------------------------------- 182 consensus_7856#1 TGGATATTTCTTCACAATGATCTGGCAAGATTATGATAAAACCAGTTCTTGTGCCAGAAA 640 * ** *** consensus_7856#0 CAAAGGCTAAAATTCACTGCTGTATACGTTTTGAAATTCTACATCATGACTGTCAATTAA 1429 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 TTTCTGAGGGAAAAAACGGAAAAAACGT-------------------------------- 668 consensus_7856#0 ACATATCTTGTTCACATTTCAAATGTGAGCTGTTGGAAATCATCTTCAAAACATTGAGAT 1489 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 GTCAAATATTAACACCAATTTCATGTCAATTGAAAAAAGATACAAAGCGTTTGATCAATG 1549 consensus_7856#2 ------------------------------------------------------------ consensus_7856#1 ------------------------------------------------------------ consensus_7856#0 ATATATTATATTCCGATAGTAAATAATAAAATT 1582 consensus_7856#2 --------------------------------- consensus_7856#1 --------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||