These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7859#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 826 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCCATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTTCGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGATCTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAAGAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCT-CCATATGCAAAAGAAGAAAACACAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCAAAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATTCAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGTGGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG] [+] EMBL BM579810 [CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCCATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTTCGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGATCTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAAGAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCT CCATATGCAAAAGAAGAAAACACAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCAAAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATTCAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGTGGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAAC ] [-] EMBL BM654829 [ CACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAAGAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCTCCCATATGCAAAAGAAGAAAACACAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCAAAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATTCAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGACGACGAAGGTGGTGTGGGACATTTGAACCAAAGAGATCGATACTAAGAAGAACCCAAGGAAAACCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGATAATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTTTTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG] consensusID : consensus_7859#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 413 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACCAACACG] [+] EMBL BM623908 [CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTTGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCAC ] [+] EMBL BM587350 [ ccgGAGGATTTCCTTGAGCGCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCGTTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACC ] [+] EMBL BM609964 [ ccgGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCATCGTCCGTCTGGATTCGCAGAAGCACATCTACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGAT ] [+] EMBL BM579768 [ ccgGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCAGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGCGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACTTTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTAAATGAGTGTCACCAACACG] [+] EMBL BM614629 [ ccgCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTGGCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTGCCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACATTCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACC ] consensusID : consensus_7859#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 66 fasta sequence [GGTTTGCTGTTGGGTGGNNGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGCA] [+] EMBL BX619410 [GGTTTGCTGTTGGGTGGNNGTGGTGGCTGTGGCCAGAGCCGCCCCAATGGACGACGGAATGCAGCA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7859#0 CCGCGGACGCGTGGGCGGACGCGTGGGCGGACGCATTCCTGACCCCATGGCCGGCGCGCC 60 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------------------------------------------------------------ consensus_7859#0 ATCGAAATCGACAACCGAAATTCATCTCCATCACGAATCAGTGCGGTTACGGCCGCGGTT 120 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------------------------------------------------------------ consensus_7859#0 CGGTGAAATGAAGCGCCGGGCTGCACGCCCGTGTTCGAAGTGTGTCGGTCGGAAGACGAT 180 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------------------------------------------------------------ consensus_7859#0 CTATTGAAACGAATGCGATCACCCTGAAAATCAACAGCGACCACGTGAGGCCCACATGAA 240 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------------------------------------------------------------ consensus_7859#0 GAAAAGCCAACAGCGACACGTGGAGTTCCCTGAACCCTCCATATGCAAAAGAAGAAAACA 300 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------CCGCGGACGCGTGGGCGGACGCGTGGGGCTTGAGAATTGAGGATTTCCTTGAGC 54 consensus_7859#0 CAAAAGCATAAAGAGCGAAAATCAATCCCACTCGGAAGAAGATGAAGAACAAAAGATGCA 360 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 GCCGTCTGCAGACCCAGGTGTTCAAGCTGGGATTGGCCAAGTCGTACCATCACGCTCGCG 114 consensus_7859#0 AAACAAAAAGAAAACATTCACGCTAAGCAAAAGCAACTACAACAACGGCTTTGCACAATT 420 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 TTCTGATCCGCCAGCGTCACATTCGTGTCCGCAAGCAGGTCGTGAACGTTCCTTCGTTCA 174 consensus_7859#0 CAATTGAAAAACAATCCGTTTTATATATCCGCTGTACTGCGAGTTGGTGAC--GACGAAG 478 consensus_7859#2 ------------------------------GGTTTGCTGTTGGGTGGNNGT--GGTGGCT 28 consensus_7859#1 TCGTCCGTCTGGATTCGCAGAAGCACATCGACTTCTCGCTGAAGTCGCCCTTCGGTGGTG 234 * * * * * * consensus_7859#0 GTGGTGTGGGACATTTGAACCAAAGAGATCGATACT-----AAGAAGAACCCAAGGAAAA 533 consensus_7859#2 GTGGCCAGAGCCGCCCCAATGGACGA---CGGAATG-----CAGCA-------------- 66 consensus_7859#1 GCCGTCCGGGTCGCGTCAAGAGGAAGAACCTGAAGAAGGGCCAGGGTGGCGGCGGTGCTG 294 * * * * * ** * * ** consensus_7859#0 CCATGAAAAACTAAACAAACGGAATACTTAGACATTAATGAACATCAAAACAGAAATGAT 593 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 CCGAAGAGGAGGAAGAGGATTAAACTGCTGGTCGCGGTTGGTTGTCTAAACCCTAAACAT 354 consensus_7859#0 AATGATTTGCAAATAGTGTTTATACAGAGTTTTTACTTCAAACCTATCCCATATTTGCTT 653 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 TCTGTCACTCAGCTAGATGTAATAATAACAACAAGCATTACATGAGTGTCACCAACACG- 413 consensus_7859#0 TTGTACACCACCAACCAACGTTCAGTTTTAAATTATCCGTCGAACAAAAGAACAAAAGAA 713 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------------------------------------------------------------ consensus_7859#0 CAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAA 773 consensus_7859#2 ------------------------------------------------------------ consensus_7859#1 ------------------------------------------------------------ consensus_7859#0 AGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGAACAAAAGCGG 826 consensus_7859#2 ----------------------------------------------------- consensus_7859#1 ----------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||