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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7863#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 5 consensus length = 643 fasta sequence
[GGGTATTTCTGCAAGGAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTT-GATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTGTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCGGGGGG]
[+] EMBL CNS092OB [GGGTATTTCTGCAAGTAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTACACGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTACAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCGGGGGG]
[+] EMBL BM575933 [ ccGAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGTGCGGTTTTTGCATCTTTGCTGTGGGACTTCTTCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGGTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGCGGTGGATTTGTGTGATTGGATTGGTGGTGTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCC ]
[+] EMBL BM621584 [ ccGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCCACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGGATCTAGTAACCATGGGTACTACCCTGAGGg ]
[+] EMBL BM657063 [ ccgGTTCGTGCGAGAAGGAAGTGTGCGGTTTTTGCATCTTTGCTGTGGGACTTCTTCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGGTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGCGGTGGATTTGTGTGATTGGATTGGTGGTGTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTATCATCAAttg ]
[+] EMBL BM612186 [ ccgTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTT GATCTAGTAGCAATGGGTACTACCCTGAGGTGG ]
consensusID : consensus_7863#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 604 fasta sequence
[CCGCCCACGCGTCCGCTCAACACGTACGGCAGTGTGGCTGTGCCTTGCACTGCTCGCGATCACTACTGCACCGTCGCCCGTTTTATCCGACGAAGGTGACGAGCAGGAGCAGGAAGCGCACACAACGCAGGAAGCGCAGGTGGCGCATGAAGAGCAAGCTACCGCACCAACCCCGGAAGCCAATGGGGAAGAAGGTGTAGGTGAAGGTGAAGCAACCGATACGGATGGGGAAGAAGCGGCCGAAACGGACGGAGCGAACCCGGGCGGAATGTTCGTGATGCAGCCGATCAACATACTGCTCGCACCGACCGCCTGCAAGCCGGGCTATCGTGTCGATCATAAGGGCAAGTGTCGGCCCACACTGTGAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG]
[+] EMBL BM604660 [CCGCCCACGCGTCCGCTCAACACGTACGGCAGTGTGGCTGTGCCTTGCACTGCTCGCGATCACTACTGCACCGTCGCCCGTTTTATCCGACGAAGGTGACGAGCAGGAGCAGGAAGCGCACACAACGCAGGAAGCGCAGGTGGCGCATGAAGAGCAAGCTACCGCACCAACCCCGGAAGCCAATGGGGAAGAAGGTGTAGGTGAAGGTGAAGCAACCGATACGGATGGGGAAGAAGCGGCCGAAACGGACGGAGCGAACCCGGGCGGAATGTTCGTGATGCAGCCGATCAACATACTGCTCGCACCGACCGCCTGCAAGCCGGGCTATCGTGTCGATCATAAGGGCAAGTGTCGGCCCACACTGTGAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG]
consensusID : consensus_7863#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 493 fasta sequence
[CCGCCCACGCGTCCGCTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTATAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG]
[+] EMBL BM620265 [CCGCCCACGCGTCCGCTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACCGTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAGTTCCCTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATCACTATGAATATATTCTAAATGTTTGTTTAACTATAACACCTTACGCCAAAGTGATGCAATAAAGCTTAACCTACTGTCATCAATTG]
consensusID : consensus_7863#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 465 fasta sequence
[ATCGCCCGAGGGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGGTACGAATGATCGTTCTCGCGAATGCTGTCATATATGATCGTGCTGCGTTGCGAAACAGTGATGCAATATCAAAACAACAACACCAATATAGCAACCGTACTGAAAAGGCTTGATTGTAACTTATACGACCTATGTTTACTTTTCTACAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCNGATGGAACCGTACTGGATCACAAGGG]
[+] EMBL AL933757 [ATCGCCCGAGGGGGACTTCTCCGATCGAGAGTGCTAGTTGTACTAAGCTTGGGGCTTTAGATACACGTTTATCAACGTGACACGTTTGGAATAGATGCTTGATCTAGTAGCAATGGGTACTACCCTGAGGTGGATTTGTGTGATTGGATTGGTGGTTTGCGTGAGTGCCGGTGTTGTGGTCGATTATTATGAGGATGAGGGAAGTGCAAACGGACCGCCGACAACTTCGATCGTACCACAACTGATAATTGGAATGGTACGAATGATCGTTCTCGCGAATGCTGTCATATATGATCGTGCTGCGTTGCGAAACAGTGATGCAATATCAAAACAACAACACCAATATAGCAACCGTACTGAAAAGGCTTGATTGTAACTTATACGACCTATGTTTACTTTTCTACAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCNGATGGAACCGTACTGGATCACAAGGG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7863#0 GGGTATTTCTGCAAGGAGTGAATCCGCGGCTGCTGGCGAATGATAAGATAAAACTGCGCC 60
consensus_7863#2 ------------------------------------------------------------
consensus_7863#3 ------------------------------------------------------------
consensus_7863#1 ---------CCGCCCACGCGTCCGCTCAACACGTACGGCAGTGTGGCTGTGCCTTGCACT 51
consensus_7863#0 ACTTGAGAGTGAGAGTTCGTGCGAGAAGGAAGTGCGCGGTTTTTGCATCTTTGCTGTGGG 120
consensus_7863#2 --------------------------------------------CCGCCCACGCGTCCG- 15
consensus_7863#3 ----------------------------------------------ATCGCCCGAGGGGG 14
consensus_7863#1 GCTCGCGATCACTACTGCACCGTCGCCCGTTTTATCCGACGAAGGTGACGAGCAGGAGCA 111
*
consensus_7863#0 ACTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATC 180
consensus_7863#2 -CTTCTCCGATCGAGAGTGCTAGTTGTACTAGAGCTTGGGGCTTTAGATACACGTTTATC 74
consensus_7863#3 ACTTCTCCGATCGAGAGTGCTAGTTGTACTA-AGCTTGGGGCTTTAGATACACGTTTATC 73
consensus_7863#1 GGAAGCGCACACAACGCAGGAAGCGCAGGTGGCGCATGAAGAGCAAGCTACCGCACCAAC 171
* * * * ** * ** ** * ** *** * *
consensus_7863#0 AACGTGACACGTTTGGAATAGATGCTTGATCTA----GTAGCAATGGGTACTACCCTGAG 236
consensus_7863#2 AACGTGACACGTTTGGAATAGATGCTTGATCTA----GTAGCAATGGGTACTACCCTGAG 130
consensus_7863#3 AACGTGACACGTTTGGAATAGATGCTTGATCTA----GTAGCAATGGGTACTACCCTGAG 129
consensus_7863#1 CCCGGAAGCCAATGGGGAAGAAGGTGTAGGTGAAGGTGAAGCAACCGATACGGATG-GGG 230
** * * * ** * * * * * * ***** * *** * *
consensus_7863#0 GTGGATTTGTGTGATTGGATTGGTGGTGTGCGTG---AGTGCCGGTGTTGTGGTCGATTA 293
consensus_7863#2 GTGGATTTGTGTGATTGGATTGGTGGTTTGCGTG---AGTGCCGGTGTTGTGGTCGATTA 187
consensus_7863#3 GTGGATTTGTGTGATTGGATTGGTGGTTTGCGTG---AGTGCCGGTGTTGTGGTCGATTA 186
consensus_7863#1 AAGAAGCGGCCGAAACGGACGGAGCGAACCCGGGCGGAATGTTCGTGATGCAGCCGATCA 290
* * * * *** * * ** * * ** *** ** * **** *
consensus_7863#0 TTATGAGGAT-GAGGGAAGTGCAAACGGACCGC-CGACAACTTCGATCGTACCA-CAACT 350
consensus_7863#2 TTATGAGGAT-GAGGGAAGTGCAAACGGACCGC-CGACAACTTCGATCGTACCA-CAACT 244
consensus_7863#3 TTATGAGGAT-GAGGGAAGTGCAAACGGACCGC-CGACAACTTCGATCGTACCA-CAACT 243
consensus_7863#1 ACATACTGCTCGCACCGACCGCCTGCAAGCCGGGCTATCGTGTCGATCATAAGGGCAAGT 350
** * * * * ** * *** * * ****** ** *** *
consensus_7863#0 GATAATTGGAAT-----GCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACC 405
consensus_7863#2 GATAATTGGAAT-----GCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACC 299
consensus_7863#3 GATAATTGGAAT-----GGTACGAATGATCGTTCTCGCGA--ATGCTGTCATATATGATC 296
consensus_7863#1 GTCGGCCCACACTGTGAGCGAGCATTGTTTGACGCTCCGATCGTGTGCCCGGATGGAACC 410
* * * * * ** * * *** ** * ** * *
consensus_7863#0 GTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAG 465
consensus_7863#2 GTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAG 359
consensus_7863#3 GTGCTGCGTTGCGAAACAGT-----GATGCAATATCAAAACAACAACACCAATATAGCAA 351
consensus_7863#1 GTACTGGATCACAAGGGTGTATGCCGACGACCGATGGGGAGATGAAGTTCAAATTTACAG 470
** *** * * * ** ** * ** * * ** *** * **
consensus_7863#0 TTCC-CTAAATCAACCCAACAATGTATCGCAAAGTCGATCTTCACAATC--ACTATGAAT 522
consensus_7863#2 TTCC-CTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATC--ACTATGAAT 416
consensus_7863#3 CCGTACTGAAAAGGCTTGATTGTAACTTATACGACCTATGTTTACTTTTCTACAGCGAGC 411
consensus_7863#1 TTCC-CTAAATCAGCCCAACAATGTATCGCAAAGTCGATCTTCACAATC--ACTATGAAT 527
** ** * * * * * * ** ** ** * ** **
consensus_7863#0 ATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAA 582
consensus_7863#2 ATATTCTAAATGTTTGTTTAACTATAACACCTTACGCCAAAGTGATGCAATAAAGCTTAA 476
consensus_7863#3 ATTGTTTGACGCTCCGATCGTGTGCC-CNGATGGAACCGTACTGGATCACAAGGG----- 465
consensus_7863#1 ATATTCTAAATGTTTGTTTAACTACAACACCTTACGCCAAAGTGATGCAATAAAGCTTAA 587
** * * * * * * * * * ** * ** ** * *
consensus_7863#0 CCTACTGTCATCAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAAGGGCCCCGGGGG 642
consensus_7863#2 CCTACTGTCATCAATTG------------------------------------------- 493
consensus_7863#3 ------------------------------------------------------------
consensus_7863#1 CCTACTGTCATCAATTG------------------------------------------- 604
consensus_7863#0 G 643
consensus_7863#2 -
consensus_7863#3 -
consensus_7863#1 -
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||