These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7867#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1029 fasta sequence [AGATATAATACCGGTAGAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGTACTTCAATAAAAAAAACC] [+] EMBL CNS08FDI [AGATATAATACCGGTAGAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAG ] [+] EMBL CNS08UFC [ GAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGGACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTGCTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACT ] [+] EMBL BM640193 [ ccgACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACTCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTAGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGTTACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAA ] [+] EMBL BM623064 [ cCGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCAGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATATATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACCAGCCGG ] [-] EMBL CNS08FDJ [ GTTCTTACTGCTCGGAAAATGCAACTCCTCATAGCGATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTAACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATTTTTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAAAACTGGAGTTTAACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAAAACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTTTCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGTACTTCAATAAAAAAAACC] [-] EMBL CNS08UFD [ TAACTTAACGCACGCCTTCGACTATTGTGCAGCATCGAAGGATCTTTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCAATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGGACAATCTTGCCTGCGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGTACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGCAGCTTCGAGCACGATAAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTTTCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTGCTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATGTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGT ] [+] EMBL BM596039 [ ccgATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGGTTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCGACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAATACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGTGTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATTTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTT ] consensusID : consensus_7867#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 664 fasta sequence [ACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGTGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGTAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCATAGTGTGCGGATGAATGTGTATTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTGACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATTTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTT] [+] EMBL BX627934 [ACCGGGCACAAATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGTGGATACTTTCACCGGTACGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGAGTACAATGCAAGGACGTGTAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCGTACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCAGGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGATGCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGATACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCAGCAAGTGTAAGTACGGATGCTCGAACGACACGTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCATAGTGTGCGGATGAATGTGTATTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGGCTCTGGCGAGGAACTTGACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAATTTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7867#0 AGATATAATACCGGTAGAACGGTTCGTTCTTACTGCTCGGAAAATGCAACTCCTCATAGC 60 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 GATCTTCTCGCTGCTTCTGGCAGTTGGTGGTAACTTCACGCACGCCTTCGACTATTGTGC 120 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 AGCATCGAAGGATCTCTGTCCCGTGCCCGGTTCGCGGCATGTCGTTTGCAATGGGAGGCA 180 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 ATTTGCGCCCGCTTGCAAAAGTCCCAAGCTTATCAAGATGAAACCCGAATACCGGGCACA 240 consensus_7867#1 --------------------------------------------------ACCGGGCACA 10 ********** consensus_7867#0 AATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGCGGATACTTTCACCGGTA 300 consensus_7867#1 AATACTGGAGTTTCACAATCGATTGCGGAACAATCTTGCCTGTGGATACTTTCACCGGTA 70 ****************************************** ***************** consensus_7867#0 CGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGA 360 consensus_7867#1 CGCCGAAGCGAGTTCGATGGAGGAGCTGCACTGGGACAATAAGCTGGCCCGCATAGCCGA 130 ************************************************************ consensus_7867#0 GTACAATGCAAGGACGTGCAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCG 420 consensus_7867#1 GTACAATGCAAGGACGTGTAGCTTCGAGCACGATGAGTGCCGAAACACGCGCAGATATCG 190 ****************** ***************************************** consensus_7867#0 TACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCA 480 consensus_7867#1 TACCGCTGGTCAGAACCTTGCCATAAATTGGTTCTACGGCATGAACGTGACGGTGGCGCA 250 ************************************************************ consensus_7867#0 GGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGAT 540 consensus_7867#1 GGCGTTGGATAAGTTCCAGCGCCACTGGTTCCTGGAGTATAGGAAAGGCCGCCAGAAGAT 310 ************************************************************ consensus_7867#0 GCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGAT 600 consensus_7867#1 GCTCGACCGCTACACCAAACTCTCGATACAAGCCGGTATAGGACACTTCACGCAGATGAT 370 ************************************************************ consensus_7867#0 ACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGCTTTCAAGGCATCCATCAAGG 660 consensus_7867#1 ACACGCCGACACGCAGTACGTTGGCTGTGCGATGGTACGC-------------------- 410 **************************************** consensus_7867#0 TTTTCCGGTGACACAGTACTATCTGGTGTGTAACTACTCGGTGGGCAATCTGTACGAGCG 720 consensus_7867#1 ------------------------------------------------------------ consensus_7867#0 ACCCGTCTATCGGAAAGGTAAACGGTGCAGCAAGTGTAAGTACGGATGCTCGAACGACAC 780 consensus_7867#1 ----------------------------AGCAAGTGTAAGTACGGATGCTCGAACGACAC 442 ******************************** consensus_7867#0 GTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCAAAGTGTGCGGATGAATGT 840 consensus_7867#1 GTCCTACCGATGCTTGTGCCGTTCGTCCGTGCGGAACTAGCATAGTGTGCGGATGAATGT 502 ****************************************** ***************** consensus_7867#0 GTACTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGG 900 consensus_7867#1 GTATTACTGCTTCGGGGAGATCTGTGTCTGAACAAGGAAAGGATCATCGGTATCGATAGG 562 *** ******************************************************** consensus_7867#0 CTCTGGCGAGGAACTTAACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAAT 960 consensus_7867#1 CTCTGGCGAGGAACTTGACGTGAAAGGGCGGTAAAGTTCAAACGATGCTATTGAACAAAT 622 **************** ******************************************* consensus_7867#0 GTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTTCTTAAGTGTACTTCAATA 1020 consensus_7867#1 TTAATCATAGTTTTTTTTGTGCGTATATAAATCAAAACTCTT------------------ 664 ***************************************** consensus_7867#0 AAAAAAACC 1029 consensus_7867#1 --------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||