These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7876#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 752 fasta sequence [CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCGTTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAAAAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCC] [+] EMBL BX621945 [CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCGTTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAAAAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCT ] [+] EMBL BX612961 [ AACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAA ] [+] EMBL BX608390 [ ATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACACAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAAATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCC] [+] EMBL BX622709 [ TGTAAGAGGTTANTTGTANTAGCTGTAAGAGAAAGCANCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTGTAATAATACNCAAGTAAAAGCAAAACTCACAAACACACACNCACGCTCCCTTATTCA ] consensusID : consensus_7876#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 726 fasta sequence [CCGATAAATATATATATATATATATATATATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGAAAATGGGAAATAAAACCCCCTCTAAAAAAGGAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGC-AAAAAAAAACATTGATGCAAATACATAATCCTGCAAATTGTTGTTAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCGCCCACGCGTCCGCGGACGCGTGG] [+] EMBL BM653942 [CCGATAAATATATATATATATATATATATATATATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGTGAGAGAGAACAGGCAAAGAAAATGGGAAATAAAACCCCCTCTAAAAAAGGAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGC GTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACATACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCA AAACAAACCAACC CCCCCCCTCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGCAAAAAAAAAACATTGATGCAAATAC ] [+] EMBL BX619045 [ GAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAAAAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGTCACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGC AAAAAAAAACATTGAT ] [+] EMBL BX622704 [ AAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAAACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGTTAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCACTTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGTATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATGCAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGAAATGAAGATAGTTTAGTAGAGTGNGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTACAGAAAGAGAAAAGAGAGAAGAGAAAAAG ] [-] EMBL BM577612 [ AAGAAATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTCCAGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGC AAAACACCCATTGATGCAAATACATAATCCTGCAAATTGTTGTTAAAAAAAAAAAAAAAAAGGGCGCCGCTCGCGCCCACGCGTCCGCGGACGCGTGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7876#0 CATGACAGCAAACTCTTTAGAGAGGGTGTAGTGTTGTTGCAAGGGAAAGAATAGAGATCG 60 consensus_7876#1 ------------------------------------------------------------ consensus_7876#0 TTATCGAAGTCGATAAATAAAAGGGAAACATGCTACTAAATACATAGCAAAATGCAACAA 120 consensus_7876#1 ------------------------------------------------------------ consensus_7876#0 AAAAAACACAGCTGAACCTAATCAACATAAAGCTAAACACAAGTTGTGTGAGTAAAAACA 180 consensus_7876#1 ------------------------------------------------------------ consensus_7876#0 CAAAAACAAACACAAAGAAAACAAAACACACGCAAAACATAAGATAACGAATAAAGAGAA 240 consensus_7876#1 ------------------------------------------------------------ consensus_7876#0 ATGTGCGTAAAAATTAACAAGAAAGTGGGACAGAACATTAGGTCTATATAGAAGTACATA 300 consensus_7876#1 --------------------------CCGATA-AATAT-ATATATATATATATATATATA 32 ** * ** ** * * ****** * ** *** consensus_7876#0 TATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGT 360 consensus_7876#1 TATATATATATTTAATACAGAGATATAGAGAAAGAGAGTCAACTTATAGAAAGAGAGAGT 92 ************************************************************ consensus_7876#0 GAGAGAGAACAGGCAAAGGAAATGGGAAATAAAACTCCCTCTAAAAAAGTAATGTGTTAA 420 consensus_7876#1 GAGAGAGAACAGGCAAAGAAAATGGGAAATAAAACCCCCTCTAAAAAAGGAATGTGTTAA 152 ****************** **************** ************* ********** consensus_7876#0 AAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAA 480 consensus_7876#1 AAAGAAAGAAATGTGTTAATAGAACGTGATAGGAGAATGAGCGTGTGTGTGTGTGAGTAA 212 ************************************************************ consensus_7876#0 ACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGT 540 consensus_7876#1 ACGAGAGAGGGGTAGGAATGTGTTATAAAACGTAAAAATGTGAGCAAATGTGTAAGAGGT 272 ************************************************************ consensus_7876#0 TAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCAC 600 consensus_7876#1 TAGTTGTAGTAGCTGTAAGAGAAAGCAGCAGTGTGTGGGTGCGCGATAAGAATCACCCAC 332 ************************************************************ consensus_7876#0 TTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGT 660 consensus_7876#1 TTTCACTTTCACAGACACAGATACACACATTTTGCTCTAGTTTGCAAAGAATACACAAGT 392 ************************************************************ consensus_7876#0 ATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATG 720 consensus_7876#1 ATAATAATACACAAGTAAAAGCAAAACTCACAAACACACACACACGCTCCCTTATTCATG 452 ************************************************************ consensus_7876#0 CAAAACATCCAATCAAACCAACCACCCCTCCC---------------------------- 752 consensus_7876#1 CAAAACATCCAATCAAACCAACCACCCCTCCCCCCCCCCCCCATCCCATTAGGAAAAAGA 512 ******************************** consensus_7876#0 ------------------------------------------------------------ consensus_7876#1 AATGAAGATAGTTTAGTAGAGTGTGGAGCATGTACGAAGCACGAGGCAGATAAGAGTTAC 572 consensus_7876#0 ------------------------------------------------------------ consensus_7876#1 AGAAAGAGAAAAGAGAGAAGAGAAAAAGAAAAGAACAAAAAAAGTTTAAAGAAGCAAAAA 632 consensus_7876#0 ------------------------------------------------------------ consensus_7876#1 AAAACATTGATGCAAATACATAATCCTGCAAATTGTTGTTAAAAAAAAAAAAAAAAAGGG 692 consensus_7876#0 ---------------------------------- consensus_7876#1 CGCCGCTCGCGCCCACGCGTCCGCGGACGCGTGG 726 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||