These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7880#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1620 fasta sequence [CCGATTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTTGCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGGCAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCTAAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCC-AAAAAAGACAATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCACTATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATTTACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCTCTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAATGTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGAGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGCANGGTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATTTTAACATGTGTACGATAGTGGTTAGCGTCTCGTGGTTGAATGCCGCGGCGTGTATCGCAGCAAACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGTTCTAGTTTATCACACCATTTGTTGATATCATGTAGCGCCGGGCAGTATAAATAAGCAAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATTCACTTTATTGCAC---A-CCAAACGATTATTGAGCCCAGTAGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTGTTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCGTCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTACCAGTACTGTATCGCGGCCAATC] [+] EMBL BM605460 [CCGATTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTTGCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGGCAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCTAAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCC AAAAAAGACAATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCACTATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATTTACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCTCTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAATGTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGAGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGC ] [+] EMBL BX620915 [ TTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTTGCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGGCAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCTAAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCCAAAAAAAGACAATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCACTATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATTTACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCTCTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAATGTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACNGAGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGCANGGTTACAGTACAGTGCGGCATTTGACTAG ] [+] EMBL BX613015 [ ACTAATCGGAGTCGTAAAGTCGTAAATAATATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGGGGCCAGATGTGTAGTAGAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATTTTAACATGTGTACGATAGTGGTTAGCGTCTCGTGGTTGAATGCCGCGGCGTGTATCGCAGCAAACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGTTCTAGTTTATCACACCATTTGTTGATATCATGTAGCGCCGGGCAGTATAAATAAGCAAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATTCACTTTATTGCAC A CCAAACGATTATTGAGCCCAGTAGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTC ] [+] EMBL BX608382 [ AGCAAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATTCACTTTATTGCAC A CCAAACGATTATTGAGCCCAGTAGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTGTTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCGTCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTACCAGTACTGTATCGCGGCCAATC] [+] EMBL BX609829 [ GCGAGCAACAACGAATTCAGTCTCGAGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTACTCACTTTATTGCACTTTATGCAAACGATTATTGAGCCTAGTAGCAAAACCACCG AAAAAACAAAATCTCCTGTTGCGCATCCTCGACGGACTTTTGGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATAC TTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGCAGTGTAAAGTGTGAGGGATACGTGTT ] [+] EMBL BX615987 [ ATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTGTTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCGTCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTACCAGTACTGTATCGCGG ] [+] EMBL BX610408 [ ATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAAATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCACGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATTAACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAATGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTCATACAGCAGTAGTGTAAAGTGTGA ] consensusID : consensus_7880#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 578 fasta sequence [AGAATCCCCGAGGTNTAAAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATATTTAACATGTGTACGATAGTGGTTAGCGTCTACGTGGTTGAATGCCGCGGCGTGTATCGCAGCAACACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGCTTTCTAGTTTATCACGCCATAATGTATGATATCATGTAGCGCCGGGCAGTATAAATAAGCANAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAAGTTCAGTCTCGAGGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATATCACTTTACTTGCAGCTTATATGCAAACGAGTTATTGAGCCTAGGTAGGCAAAACCACCGAAACAAACAAAATCTCCTGTTGCGCATCCTCGACGGACTTNTTGGTAGCTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATATAGCATGATTGAGCTATTTC] [+] EMBL AL933192 [AGAATCCCCGAGGTNTAAAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAATGTCGAGTGAATGTAGATCGACATTCAATATTTAACATGTGTACGATAGTGGTTAGCGTCTACGTGGTTGAATGCCGCGGCGTGTATCGCAGCAACACTAACGTTTTAAAGCAACACGCTTGGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGCTTTCTAGTTTATCACGCCATAATGTATGATATCATGTAGCGCCGGGCAGTATAAATAAGCANAACGTTTGGCTAAGTAAAAAAGCAAGCAACAACGAAGTTCAGTCTCGAGGTTGATTTAGGTTCATTTTGTGTCGAATTTGCTTAAATTTATATCACTTTACTTGCAGCTTATATGCAAACGAGTTATTGAGCCTAGGTAGGCAAAACCACCGAAACAAACAAAATCTCCTGTTGCGCATCCTCGACGGACTTNTTGGTAGCTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAATATATAGCATGATTGAGCTATTTC] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7880#0 CCGATTCCAATTAGTGCTGCCGTACTCTCGACAACCCTGGAACGAACTCTATTCCCCTTT 60 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 GCAGGAAAGCCATGAGTATTGTATCAGTTTGTTCATATTAGTAATACTTACCCAACACGG 120 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 CAAAGTTAAAGTCCTTCAAAGCAAAACTGGTTCGCAGTAGTTTGCAAATAATCTCGCTCT 180 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 AAGGGAGGGTTTGGTACAAGCAGTGTGCAGTGAGCGTACCGAACGAACCCCAAAAAAGAC 240 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 AATATGAATCAATCTATTTTTAACGATATTTTTCTTTATCCGCTCGTTTATTGTGTGCAC 300 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 TATTTTTGGCGCGAATTTTTGAATCCAAAAACAATAGCGCTACCAGTGTATGTGTGAATT 360 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 TACTTAAGGAGCCACATTTAGTGCTTAGAAAAGAAAGTCAAGAAAGAAGTTTTACTCGCT 420 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 CTTGCGCATAAGGTTTGCTTTGGAAGATTTTGACTTAATTCGTTTTGAAATTTCGGGAAT 480 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 GTTTAAGTGTTAGAAAAATAGTGAAGAGGAGACTAATCGGAGTCGTAAAGTCGTAAATAA 540 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 TATTTAAATTGTATCTTTTATACGCAACTCTTAATCGAAAACGGAGGCCAGATGTGTAGT 600 consensus_7880#1 -----------------------------------------AGAATCCCCGAGGTNT--- 16 * * ** ** ** * consensus_7880#0 AGAATCGCCCAACAGATCATATGCANGGTTACAGTACAGTGCGGCATTTGACTAGTAAAT 660 consensus_7880#1 AAAATCGCCCAACAGATCATATGCAGGTTTACAGTACAGTGCGGCATTTGACTAGTAAAT 76 * *********************** * ******************************** consensus_7880#0 GTCGAGTGAATGTAGATCGACATTCAAT-TTTAACATGTGTACGATAGTGGTTAGCGTCT 719 consensus_7880#1 GTCGAGTGAATGTAGATCGACATTCAATATTTAACATGTGTACGATAGTGGTTAGCGTCT 136 **************************** ******************************* consensus_7880#0 -CGTGGTTGAATGCCGCGGCGTGTATCGCAGCAA-ACTAACGTTTTAAAGCAACACGCTT 777 consensus_7880#1 ACGTGGTTGAATGCCGCGGCGTGTATCGCAGCAACACTAACGTTTTAAAGCAACACGCTT 196 ********************************* ************************* consensus_7880#0 GGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCG--TTCTAGTTTAT 835 consensus_7880#1 GGCTGCAAGCGGAACGTAGTCTTTGTAAGTAACTAAGGAAGGCCTCGCTTTCTAGTTTAT 256 *********************************************** *********** consensus_7880#0 CACACCATT-TGT-TGATATCATGTAGCGCCGGGCAGTATAAATAAGCAAA-CGTTTGGC 892 consensus_7880#1 CACGCCATAATGTATGATATCATGTAGCGCCGGGCAGTATAAATAAGCANAACGTTTGGC 316 *** **** *** *********************************** * ******** consensus_7880#0 TAAGTAAAAAAGCAAGCAACAACGAA-TTCAGTCTCGAG-TTGATTTAGGTTCATTTTGT 950 consensus_7880#1 TAAGTAAAAAAGCAAGCAACAACGAAGTTCAGTCTCGAGGTTGATTTAGGTTCATTTTGT 376 ************************** ************ ******************** consensus_7880#0 GTCGAATTTGCTTAAATTTAT-TCACTTTA-TTGCACAC------CAAACGA-TTATTGA 1001 consensus_7880#1 GTCGAATTTGCTTAAATTTATATCACTTTACTTGCAGCTTATATGCAAACGAGTTATTGA 436 ********************* ******** ***** ******* ******* consensus_7880#0 GCCCAGT--AGCAAAACCACCGAAAAAAATACAATCTCCTGTTGCGCATCCTCGACGGAC 1059 consensus_7880#1 GCCTAGGTAGGCAAAACCACCGAAACAAACAAAATCTCCTGTTGCGCATCCTCGACGGAC 496 *** ** *************** *** * **************************** consensus_7880#0 TTTT-GGTAGCTTTTTTGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAA 1118 consensus_7880#1 TTNTTGGTAGCTTT--TGTTGAAGTAATGCTACGAGGTTGTCCTACATTTTGGCAGACAA 554 ** * ********* ******************************************** consensus_7880#0 TATAATAGCATGATTGAGCTTTTCCCGATCGCAACAGAATGGCGACGTTAGCAAGTTTAA 1178 consensus_7880#1 TATA-TAGCATGATTGAGCTATTTC----------------------------------- 578 **** *************** ** * consensus_7880#0 ATTCATAGTCAATTGTTTATGTTACTTGTTAGTAAAGCGAATTACGCGAGTGGCTTGGCA 1238 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 CGTAACCGGGAAAGATATGCTGAATTTGCAAGCAAACGGTATTTCATTGGACATACCATT 1298 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 AACTATCAATTTTTTAAAATAAATCTCTCACTTGTGCTTCCCTCCTTGTCATAATTGAAA 1358 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 TGATACTTTTTTACATATTTATTTATTATTACTGATTAATAGTAGGTGCGAATCGACTTC 1418 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 ATACAGCAGTAGTGTAAAGTGTGAGGGATACGTGTTTTCGTTCTTTTGCGTATGTTTTTG 1478 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 TTGTTGTGCATCATTAACAGTAATAAAGCGTAGAAAGAGTTTGCTTTTATATCGATGTCG 1538 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 TCGTGAGGTTTTAGTATCGGAATGAAATAGAAAGTTTAACTGAGATGTAAATAAAACTAC 1598 consensus_7880#1 ------------------------------------------------------------ consensus_7880#0 CAGTACTGTATCGCGGCCAATC 1620 consensus_7880#1 ---------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||