These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7887#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 911 fasta sequence [TGCTAGCTCGCAAATCATCTAATCAATTTTCTACCCAATAATCAATGAAAGTTGTCGAAATTGTGAAACACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTCGTCCGCCGTACGGCCCAAGGACGGGGCCCCGTTTCGGACCCTCCCCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGG-AAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTG-CATCGCGATCGTCTTCCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAACTGTTTGTGTTTTGCTACGGGAAGCTGTATCGCTGTAGTTGGATTAAATATCGTGCCCGACCACCTTCCTCCCCACT-CCCCTGGGGGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGGCTGTGTGTTGTGTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCG-AAAAATACACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGGGTCGTCAATCTGGACGGTGGGCCGCGGCGCGTCAACCATGCGT-CCGTGGTGGTGGGCGAATTCATCTACTCCTTCGGTGGGTACTGCACCGGGGAGGACTACCATTCGAACAGCGCAATCGACGTGCACGTGCTGAACACGCACAACATGCGCTGGGCCCCGATCCCGGCGGTGGAGGACGAGAACGGGGTGCCGTGCAAGTACCCGGAGGTGCCGTTCCAGCGGTACGGCCACACGGCCGTCGCCTTCGAGCACAAGATATACCTGTGGGGCGGGCGTATCGAAGCAGAAGAGTATGTCACAAACAACTCAAAAAAAA] [+] EMBL CNS08V63 [TGCTAGCTCGCAAATCATCTAATCAATTTTCTACCCAATAATCAATGAAAGTAGTCGAAATTGTGAAA ACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTCGTCCGCCGTACGGCCCAAGGACGGGGCCCCGTTTCGGACCCTCCCCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGG AAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTG CATCGCGATCGTCTTCCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAACTGTTTGTGTTTTGCTACGGGAAGCTGTATCGCTGTAGTTGGATTAAATATCGTGCCCGACCACCTTCCTCCCCACT CCCCTGGGGGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGGCTGTGTGTTGTGTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCT TTAAATACACAAAACCCTCCCCG ] [+] EMBL BM597871 [ ccGCTCGCAAATCATCTAATCAATTTTCTACCCAATAATCAATGAAAGTTGTCGAAATTGTGAAACACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTCGTCCGCCGTACGGCCCAAGGACGGGGCCCCCTTTTGGACCCTCCTCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGGAAAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTGCCATCGCGATCGTCTTCCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAATTGTTTGTGTTTTGCTGCGGGAAGCTGCATCGCTGTAGTTGGATTAAATATCGTGCCCAACCACCTTCCTCCCCACTCCCCCGGGGGGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGCCTGTGTGTTGTGTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCG AAAAATACACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGGGTCGTCAATCTGGACGGTGGGCCGCGGCGCGTCAACCATGCGT CCGTGGTGATGGGCGAATTCATCTACTCCTTCGGTGGGTACTGCACCGGGGAGGACTACCATTCGAACAG ] [+] EMBL AGA285039 [ TCTAATCAATTTTCTACCCAATAATCAATGAAAGTTGTCGAAATTGTGAAACACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTCGTCCGCCGTACGGCCCAAGGACGGGGCCCCGTTTCGGACCCTCCCCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGG AAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTGCCATCGCGATCGTCTTTCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAATTGTTTGTGTTTTGCTGCGGGAAGCTGCATCGCTGTAGTTGGATTAAATA ] [+] EMBL BM622086 [ ccgCGAAATTGTGAAACACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTCGTCCGCCGTACGGCCCAAGGACGGGGCCCCCTTTTGGACCCTCCTCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGGAAAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTGCCATCGCGATCGTCTTCCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAATTGTTTGTGTTTTGCTGCGGGAAGCTGCATCGCTGTAGTTGGATTAAATATCGTGCCCAACCACCTTCCTCCCCACTCCCCCGGGGGGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGCCTGTGTGTTGTGTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCGAAAAAATACACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGGGTCGTCAATCTGGACGGTGGGCCGCGGCGCGTCAACCATGCGT CCGTGGTGATGGGCGAATTCATCTACTCCTTCGGTGGGTACTGCACCGGGGAGGACTACCATTCGAACAGCGCAA ] [+] EMBL BM631167 [ ccgCGAAATTGTGAAACACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTCGTCCGCCGTACGGCCCAAGGACGGGGCCCCGTTTCGGACCCTCCCCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGG AAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTG CATCGCGATCGTCTTCCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAACTGTTTGTGTTTTGCTACGGGAAGCTGTATCGCTGTAGTTGGATTAAATATCGTGCCCGACCACCTTCCTCCCCACT CCCCTGGGGGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGGCTGTGTGTTGTGTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCG AAAAATACACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGGGTCGTCAATCTGGACGGTGGGCCGCGGCGCGTCAACCATGCGT CCGTGGTGGTGGGCGAATTCATCTACTCCTTCGGTGGATACTGCACCGGGGAGGACTACCATTCGAACAGCGCCATCGACGTGC ] [+] EMBL BM593718 [ CCGTACGGCCCAAGGACGGGGCCCCGTTTCGGACCCTCCCCCGTGTGTGTGCACCCGAGTGTGCGTATTCAGCGG AAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAACAAGGCAAATTAGGAAACCACGTATTG CATCGCGATCGTCTTCCTGTCATCCTGTCCTACCTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAACTGTTTGTGTTTTGCTACGGGAAGCTGTATCGCTGTAGTTGGATTAAATATCGTGCCCGACCACCTTCCTCCCCACT CCCCTGGGGGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGGCTGTGTGTTGTGTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCG AAAAATACACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGGGTCGTCAATCTGGACGGTGGGCCGCGGCGCGTCAACCATGCGTCCCGTGGTGGTGGGCGAATTCATCTACTCCTTCGGTGGATACTGCACCGGGGAGGACTACCATTCGAACAGCGCCATCGACGTGCACGTGCTGAACACGCACAACATGCGCTGGG ] [-] EMBL AGA283749 [ GTTCGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCG AAAAATACACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGGGTCGTCAATCTGGACGGTGGGCCGCGGCGCGTCAACCATGCGT CCGTGGTGGTGGGCGAATTCATCTACTCCTTCGGTGGGTACTGCACCGGGGAGGACTACCATTCGAACAGCGCAATCGACGTGCACGTGCTGAACACGCACAACATGCGCTGGGCCCCGATCCCGGCGGTGGAGGACGAGAACGGGGTGCCGTGCAAGTACCCGGAGGTGCCGTTCCAGCGGTACGGCCACACGGCCGTCGCCTTCGAGCACAAGATATACCTGTGGGGCGGGCGTATCGAAGCAGAAGAGTATGTCACAAACAACTCAAAAAAAA] consensusID : consensus_7887#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 378 fasta sequence [AGAATTGCCCCGAGGTTTGTGAGCAAATTGAGAGCTAATCAAAAAATCGAAAAATACACAAAACCCTTCCCGTCCCCCCCGATCGTCCGGACCGCCATCATGCACTGGTGTCGTCAATCTGGACGTGTGGGCCTGCTGGCTGCGTCAACCATGCGTCTGTGGTGGTGGGCTGAATTCATCTACTCCTTCGGTGGATACTGCACCGGGGATGGACTACCATTCGAACAGCGCCATCGACGTGCACGTGCTGAACACGCACAACATGCGCTGGGCCCCGATCCCGGCGGTGGAGGACGAGAACGGGGTGCCGTGCAAGTACCCGGAGGTGCCGTTCCAGCTGGTACGGCCACACGGCCTGTCGCCTTCGAGCACAAGATA] [+] EMBL AL930289 [AGAATTGCCCCGAGGTTTGTGAGCAAATTGAGAGCTAATCAAAAAATCGAAAAATACACAAAACCCTTCCCGTCCCCCCCGATCGTCCGGACCGCCATCATGCACTGGTGTCGTCAATCTGGACGTGTGGGCCTGCTGGCTGCGTCAACCATGCGTCTGTGGTGGTGGGCTGAATTCATCTACTCCTTCGGTGGATACTGCACCGGGGATGGACTACCATTCGAACAGCGCCATCGACGTGCACGTGCTGAACACGCACAACATGCGCTGGGCCCCGATCCCGGCGGTGGAGGACGAGAACGGGGTGCCGTGCAAGTACCCGGAGGTGCCGTTCCAGCTGGTACGGCCACACGGCCTGTCGCCTTCGAGCACAAGATA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7887#0 TGCTAGCTCGCAAATCATCTAATCAATTTTCTACCCAATAATCAATGAAAGTTGTCGAAA 60 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 TTGTGAAACACACCGTGCTGTTCACGCCCAGCAGTAAACGCTGAAGCTGCTTTCGGTTTC 120 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 GTCCGCCGTACGGCCCAAGGACGGGGCCCCGTTTCGGACCCTCCCCCGTGTGTGTGCACC 180 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 CGAGTGTGCGTATTCAGCGGAAGGAAGGAAGAAGAAGGAGCAAAATCTGCAAATGCAAAA 240 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 CAAGGCAAATTAGGAAACCACGTATTGCATCGCGATCGTCTTCCTGTCATCCTGTCCTAC 300 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 CTTGGAAGGAGGAATCGTGTGTGGCAGTGTGAAAACTGTTTGTGTTTTGCTACGGGAAGC 360 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 TGTATCGCTGTAGTTGGATTAAATATCGTGCCCGACCACCTTCCTCCCCACTCCCCTGGG 420 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 GGTGACGGTCTCATGGTTTGCATAATATGAACGCAATGTGTGGTGGCTGTGTGTTGTGTT 480 consensus_7887#1 ------------------------------------------------------------ consensus_7887#0 CGTGCATGGCGTGCAGTTGCTGTGAGCAAAATTGAGAGCTAATCAAAACATCGAAAAATA 540 consensus_7887#1 --AGAATTGCCCCGAGGT-TTGTGAGCAAA-TTGAGAGCTAATCAAAAAATCGAAAAATA 56 * ** ** ** * ********** ***************** *********** consensus_7887#0 CACAAAACCCTCCCCGTCCCCCCCGATCGTCCGGACCTCCATCATGCACTGG-GTCGTCA 599 consensus_7887#1 CACAAAACCCTTCCCGTCCCCCCCGATCGTCCGGACCGCCATCATGCACTGGTGTCGTCA 116 *********** ************************* ************** ******* consensus_7887#0 ATCTGGACG-GTGGGCC-GCGG--CGCGTCAACCATGCGTCCGTGGTGGTGGGC-GAATT 654 consensus_7887#1 ATCTGGACGTGTGGGCCTGCTGGCTGCGTCAACCATGCGTCTGTGGTGGTGGGCTGAATT 176 ********* ******* ** * **************** ************ ***** consensus_7887#0 CATCTACTCCTTCGGTGGGTACTGCACCGGGGA-GGACTACCATTCGAACAGCGCAATCG 713 consensus_7887#1 CATCTACTCCTTCGGTGGATACTGCACCGGGGATGGACTACCATTCGAACAGCGCCATCG 236 ****************** ************** ********************* **** consensus_7887#0 ACGTGCACGTGCTGAACACGCACAACATGCGCTGGGCCCCGATCCCGGCGGTGGAGGACG 773 consensus_7887#1 ACGTGCACGTGCTGAACACGCACAACATGCGCTGGGCCCCGATCCCGGCGGTGGAGGACG 296 ************************************************************ consensus_7887#0 AGAACGGGGTGCCGTGCAAGTACCCGGAGGTGCCGTTCCAGC-GGTACGGCCACACGGCC 832 consensus_7887#1 AGAACGGGGTGCCGTGCAAGTACCCGGAGGTGCCGTTCCAGCTGGTACGGCCACACGGCC 356 ****************************************** ***************** consensus_7887#0 -GTCGCCTTCGAGCACAAGATATACCTGTGGGGCGGGCGTATCGAAGCAGAAGAGTATGT 891 consensus_7887#1 TGTCGCCTTCGAGCACAAGATA-------------------------------------- 378 ********************* consensus_7887#0 CACAAACAACTCAAAAAAAA 911 consensus_7887#1 -------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||