These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7899#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1509 fasta sequence [CCGCCCACGCGTCCGCCCACGCGTCCGTACACTTTCGATTTGAGCAGCTTGGCTGGTGTTTGAAAATGTTTCCATATTACTCAGCACAGTACGAATAAAGCGTAATTCATCGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGCCTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACTGGAACATTGTTGTTGCGGGACCAAAACAAAAGTGCTGAACATCATTTAAAAAGTATCCACAACATCACAGCACAGCGCGTTGGAATACTTAACTAAAACCATGGCTCAGATGGAAAAGTCCCTACAGTCGGCTTCGACGGTGGAGGAGGAGGAAGACTATGGTCCACTGCTGATCGGAAAGCTGGAGGGCAATGGCATCACAAACGGGGACATTAAAAAGCTTGCCGAAGCCGGCTTTCACACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTCGGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTACAACGGCCACCGAGTATCACCAGAAGCGGTCGGAAATCATTCAGCTCACTACCGGGTCGAAAGAGCTGGACAAACTGCTCGGCGGTGGTATCGAAACTGGCAGCATTACGGAAATATTCGGCGAGTTTCGTACCGGCAAGACGCAGCTGTGCCACACGCTCGCCGTAACCTGCCAGCTGCCGGTCAGTCAGAACGGTGGCGAGGGCAAATGTTTGTACATCGATACGGAGGGCACGTTTCGTCCGGAGCGGCTGCTTGCTACGGCCGAGCGCTACAAGCTGGTCGGGGCGGGCGTGCTGGACAATGTGGCGTACGCGAGAGCGTACAACACCGACCACCAGATGCATCTGCTGATGGTAGCGTCGGCTATGATGGCGGAATCGCGCTACGCGCTCATTATAGTGGACAGTGCGACCAGTCTGTACCGGACCGATTACAGTGGGCGGGGCGAGCTGGCGGCTCGGCAAACGCATTTGGCCAAGTTTCTGCGCATGCTGCTGCGGCTGGCGGACGAGTTCGGGGTGGCGGTGCTGATCACGAACCAGGTCGTGGCGCAGGTGGACGGTGCGGCCATGTTCAATCCGGATCCGAAGAAACCGATCGGTGGAAACATCATAGCGCACGCGTCTACCACCCGCCTGTACATGCGGAAGGGTCGGGGCGAATCGAGAATCTGTAAAATCTACGACTCACCGTGTCTGGCGGAGGGCGAAGCCACGTTCGCGATCAATCCGGACGGAATAGGGGATGTGAAGGAGTGAGCGGCCGTACTGATCGTCTTTGCCGGTGTGGAGCAAAGGGGCGATTCGGGGGAGCGCAGCAAAAGGAGTGGGATATTTTTAGATAGGAAAGCACATCCAATTACTTGTTACACTTCGATAAATGTAATACATAACGACACA-TTTTTTTACCAAAAAAAA] [+] EMBL BM623346 [CCGCCCACGCGTCCGCCCACGCGTCCGTACACTTTCGATTTGAGCAGCTTGGCTGGTGTTTGAAAATGTTTCCATATTACTCAGCACAGTACGAATAAAGCGTAATTCATCGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGCCTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACTGGAACATTGTTGTTGCGGGACCAAAACAAAAGTGCTGAACATCATTTAAAAAGTATCCACAACATCACAGCACAGCGCGTTGGAATACTTAACTAAAACCATGGCTCAGATGGAAAAGTCCCTACAGTCGGCTTCGACGGTGGAGGAGGAGGAAGACTATGGTCCACTGCTGATCGGAAAGCTGGAGGGCAATGGCATCACAAACGGGGACATTAAAAAGCTTGCCGAAGCCGGCTTTCACACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTCGGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTACAACGGCCACCGAGTATCACCAGAAGCGGTCGGAAATCATTCAGCTCACTACCGGGTCGAAAGAGCTGGACAAACTGCTCGGCGGTGGTATCGAAACTGGCAGCAT ] [+] EMBL AGA285179 [ AAAAAGCTTGCCGAAGCCGGCTTTCACACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTCGGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTACAACGGCCACCGAGTATCACCAGAAGCGGTCGGAAATCATTCAGCTCACTACCGGGTCGAAAGAGCTGGACAAACTGCTCGGCGGTGGTATCGAAACTGGCAGCATTACGGAAATATTCGGCGAGTTTCGTACCGGCAAGACGCAGCTGTGCCACACGCTCGCCGTAACCTGCCAGCTGCCGGTCAGTCAGAACGGTGGCGAGGGCAAATGTTTGTACATCGATACGGAGGGCACGTTTCGTCCGGAGCGGCTGCTTGCTACGGCCGAGCGCTACAAGCTGGTCGGGGCGGGCGTGCTGGACAA ] [+] EMBL BX607547 [ GAGTTTCGTACCGGCAAGACGCAGCTGTGCCACACGCTCGCCGTAACCTGCCAGCTGCCGGTCAGTCAGAACGGTGGCGAGGGCAAATGTTTGTACATCGATACGGAGGGCACGTTTCGACCGGAGCGGCTGCTTGCTACGGCCGAGCGCTACAAGCTGGTCGGCGCGGACGTGCTGGACAATGTGGCGTACGCGAGAGCGTACAACACCGACCACCAGATGCATCTGCTGATGGTAGCGTCGGCTATGATGGCGGAATCGCGCTACGCGCTCATTATAGTGGACAGTGCGACCAGTCTGTACCGGACCGATTACAGTGGGCGGGGCGAGCTGGCGGCTCGGCAAACGCATTTGGCCAAGTTTCTGCGCATGCTGCTGCGGCTGGCGGACGAGTTCGGGGTGGCGGTGCTGATCACGAACCAGGTCGTGGCGCAGGTGGACGGTGCGGCCATGTTCAATCCGGATCCGAAGAAACCGATCGGTGGAAACATCATAGCGCACGCGTCTACCACCCGCCTGTACATGCGGAAGGGTCGGGGCGAATCGAGAATCTGTAAAATCTACGACTCACCGTGTCTGGCGGAGGGCGAAGCCACGTTCGCGATCAATCCGGAC ] [+] EMBL AGA281846 [ CTGGCGGCTCGGCAAACGCATTTGGCCAAGTTTCTGCGCATGCTGCTGCGGCTGGCGGACGAGTTCGGGGTGGCGGTGCTGATCACGAACCAGGTCGTGGCGCAGGTGGACGGTGCGGCCATGTTCAATCCGGATCCGAAGAAACCGATCGGTGGAAACATCATAGCGCACGCGTCTACCACCCGCCTGTACATGCGGAAGGGTCGGGGCGAATCGAGAATCTGTAAAATCTACGACTCACCGTGTCTGGCGGAGGGC ] [-] EMBL AGA280146 [ CATGTTCAATCCGAATCCGAAGAAACCAATCGGTGGAAACATCATAGCGCACGCGTNTACCACCCGCCTGTACATGCGGAAGGGTCGGGGCGAATCGAGAATCTGTAAAATCTACGACTCACCGTGTCTGGCGGAGGGCGAAGCCACGTTCGCGATCAATCCGGACGGAATAGGGGATGTGAAGGAGTGAGCGGCCGTACTGATCGTCTTTGCCGGTGTGGAGCAAAGGGGCGATTCGGGGGAGCGCAGCAAAAGGAGTGGGATATTTTTAGATAGGAAAGCACATCCAATTACTTGTTACACTTCGATAAATGTAATACATAACGACACATTTTTTTTACCAAAAAAAA] [-] EMBL AGA283885 [ CCGGATCCGAAGAAACCGATCGGTGGAAACATCATAGCGCACGCGTCTACCACCCGCCTGTACATGCGGAAGGGTCGGGGCGAATCGAGAATCTGTAAAATCTACGACTCACCGTGCCTGGCGGAGGGNGAAGCCACGTTCGCGATCAATCCGGACGGAATAGGGGATGTGAAGGAGTGAGCGGCCGTACTGATCGTCTTTGCCGGTGTGGAGCAAAGGGGCGATTCGGGGGAGCGCAGCAAAAGGAGTGGGATATTTTTAGATAGGAAAGCACATCCAATTACTTGTTACACTTCGATAAATGTAATACATAACGACACA TTTTTTTACCAAAAAAAA] consensusID : consensus_7899#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 604 fasta sequence [CCGCGGACGCGTGGGCGGACGCGTGGGTAAAAACATGTACACTTTCGATTTGAGCAGCTTGGCTGGTGTTTGATAATGTTTCCATATTACTCAGCGCAGTACGAATAAAGCGTAATTTATCGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGCCTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACTAGAACATTGTTGTTGCGGGACCAAAACAAAAGTGCTGAACATCATTTAAAAAGTATCCACAACATCACAGCACAGCGCGTTGGAATACTTAACTAAAAGCATGGCTCAGATGGAAAAGTCCCTACAGTCGGCTTCGACGGTGGAGGAGGAGGAAGACTATGGTCCACTGCTGATCGGAAAGCTGGAGGGCAATGGCATCACAAACGGGGACATTAAAAAGCTTGCCGAAGCCGGCTTTCACACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTCGGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTACAACG] [+] EMBL BM607959 [CCGCGGACGCGTGGGCGGACGCGTGGGTAAAAACATGTACACTTTCGATTTGAGCAGCTTGGCTGGTGTTTGATAATGTTTCCATATTACTCAGCGCAGTACGAATAAAGCGTAATTTATCGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGCCTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACTAGAACATTGTTGTTGCGGGACCAAAACAAAAGTGCTGAACATCATTTAAAAAGTATCCACAACATCACAGCACAGCGCGTTGGAATACTTAACTAAAAGCATGGCTCAGATGGAAAAGTCCCTACAGTCGGCTTCGACGGTGGAGGAGGAGGAAGACTATGGTCCACTGCTGATCGGAAAGCTGGAGGGCAATGGCATCACAAACGGGGACATTAAAAAGCTTGCCGAAGCCGGCTTTCACACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTCGGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTACAACG] [+] EMBL BM602066 [CCGCGGACGCGTGGGCGGACGCGTGGGTAAAAACATGTACACTTTCGATTTGATCAGCTTGGCTGGTGTTTGATAATGTTTCCATATTACTCAGCGCAGTACGAATAAAGCGTAATTTATCGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGCCTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACTAGAACATTGTTGTTGCGGGA ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7899#0 CCGCCCACGCGTCCGCCCACGCGTC----------CGTACACTTTCGATTTGAGCAGCTT 50 consensus_7899#1 CCGCGGACGCGTGGGCGGACGCGTGGGTAAAAACATGTACACTTTCGATTTGAGCAGCTT 60 **** ****** ** ****** ************************ consensus_7899#0 GGCTGGTGTTTGAAAATGTTTCCATATTACTCAGCACAGTACGAATAAAGCGTAATTCAT 110 consensus_7899#1 GGCTGGTGTTTGATAATGTTTCCATATTACTCAGCGCAGTACGAATAAAGCGTAATTTAT 120 ************* ********************* ********************* ** consensus_7899#0 CGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGC 170 consensus_7899#1 CGCAAGATTTCTAAGAAGTGTTTCAATTTTGGAAGATTCGTGTGCCTGTGGACTGTGTGC 180 ************************************************************ consensus_7899#0 CTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACT 230 consensus_7899#1 CTGTTCGCACAAGATTAGCAAGTGTCAAAGCGCCGACGTAATAAAGTGCGCCAAATCACT 240 ************************************************************ consensus_7899#0 GGAACATTGTTGTTGCGGGACCAAAACAAAAGTGCTGAACATCATTTAAAAAGTATCCAC 290 consensus_7899#1 AGAACATTGTTGTTGCGGGACCAAAACAAAAGTGCTGAACATCATTTAAAAAGTATCCAC 300 *********************************************************** consensus_7899#0 AACATCACAGCACAGCGCGTTGGAATACTTAACTAAAACCATGGCTCAGATGGAAAAGTC 350 consensus_7899#1 AACATCACAGCACAGCGCGTTGGAATACTTAACTAAAAGCATGGCTCAGATGGAAAAGTC 360 ************************************** ********************* consensus_7899#0 CCTACAGTCGGCTTCGACGGTGGAGGAGGAGGAAGACTATGGTCCACTGCTGATCGGAAA 410 consensus_7899#1 CCTACAGTCGGCTTCGACGGTGGAGGAGGAGGAAGACTATGGTCCACTGCTGATCGGAAA 420 ************************************************************ consensus_7899#0 GCTGGAGGGCAATGGCATCACAAACGGGGACATTAAAAAGCTTGCCGAAGCCGGCTTTCA 470 consensus_7899#1 GCTGGAGGGCAATGGCATCACAAACGGGGACATTAAAAAGCTTGCCGAAGCCGGCTTTCA 480 ************************************************************ consensus_7899#0 CACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTC 530 consensus_7899#1 CACGGTCGAAGCGGTAGCGTATGCGCCCAAAAAGCAGCTGCTCGCAATCAAAGGCATCTC 540 ************************************************************ consensus_7899#0 GGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTAC 590 consensus_7899#1 GGAGGCGAAGGCGGATAAAATTCTCCAGGAAGCGACGAAACACGTCCCGATGGGCTTTAC 600 ************************************************************ consensus_7899#0 AACGGCCACCGAGTATCACCAGAAGCGGTCGGAAATCATTCAGCTCACTACCGGGTCGAA 650 consensus_7899#1 AACG-------------------------------------------------------- 604 **** consensus_7899#0 AGAGCTGGACAAACTGCTCGGCGGTGGTATCGAAACTGGCAGCATTACGGAAATATTCGG 710 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 CGAGTTTCGTACCGGCAAGACGCAGCTGTGCCACACGCTCGCCGTAACCTGCCAGCTGCC 770 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 GGTCAGTCAGAACGGTGGCGAGGGCAAATGTTTGTACATCGATACGGAGGGCACGTTTCG 830 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 TCCGGAGCGGCTGCTTGCTACGGCCGAGCGCTACAAGCTGGTCGGGGCGGGCGTGCTGGA 890 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 CAATGTGGCGTACGCGAGAGCGTACAACACCGACCACCAGATGCATCTGCTGATGGTAGC 950 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 GTCGGCTATGATGGCGGAATCGCGCTACGCGCTCATTATAGTGGACAGTGCGACCAGTCT 1010 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 GTACCGGACCGATTACAGTGGGCGGGGCGAGCTGGCGGCTCGGCAAACGCATTTGGCCAA 1070 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 GTTTCTGCGCATGCTGCTGCGGCTGGCGGACGAGTTCGGGGTGGCGGTGCTGATCACGAA 1130 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 CCAGGTCGTGGCGCAGGTGGACGGTGCGGCCATGTTCAATCCGGATCCGAAGAAACCGAT 1190 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 CGGTGGAAACATCATAGCGCACGCGTCTACCACCCGCCTGTACATGCGGAAGGGTCGGGG 1250 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 CGAATCGAGAATCTGTAAAATCTACGACTCACCGTGTCTGGCGGAGGGCGAAGCCACGTT 1310 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 CGCGATCAATCCGGACGGAATAGGGGATGTGAAGGAGTGAGCGGCCGTACTGATCGTCTT 1370 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 TGCCGGTGTGGAGCAAAGGGGCGATTCGGGGGAGCGCAGCAAAAGGAGTGGGATATTTTT 1430 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 AGATAGGAAAGCACATCCAATTACTTGTTACACTTCGATAAATGTAATACATAACGACAC 1490 consensus_7899#1 ------------------------------------------------------------ consensus_7899#0 ATTTTTTTACCAAAAAAAA 1509 consensus_7899#1 ------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||