These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7900#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 696 fasta sequence [CCGCCCACGCGTCCGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTCACAATGGCATTAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACCGGGAACAGTTTTGCCGAGGTGTTGTGCGATGATTTGGACCTTAA] [+] EMBL BM638628 [CCGCCCACGCGTCCGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTCACAATGGCATTAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACCGGGAACAGTTTTGCCGAGGTGTTGTGCGATGATTTGGA ] [+] EMBL BX626645 [ TGGCATTAAAAACATACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTCGGAAACTACTTGCGCCTCTTTAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGAGATCGAANGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTACACC GGAACAG TTTGCCGANGTGCTGTGCGATGATTTGGACCTTAA] consensusID : consensus_7900#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 622 fasta sequence [GCAAGCAGATCGNCACGAGGCTNTAATGGCATTAAAAACATACGGCGATAAACCGATAAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTT-AAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGGTACCGATATCGTAATGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGTGGAATCGCAACGAATCTATGAT] [+] EMBL BX469591 [GCAAGCAGATCGNCACGAGGCTNTAATGGCATTAAAAACATACGGCGATAAACCGATAAGTTTTCAGGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTT AAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGGTACCGATATCGTAATGGACATGGAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGTGGAATCGCAACGAATCTATGAT] [+] EMBL CNS09CU7 [ ACGGCTACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAAGCGACCGAAGTACAGGATGTGCT ] consensusID : consensus_7900#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 582 fasta sequence [CAGAATCGCCCGAGGTTAACT-AAC-A--ATTTGGACGAATTTCCG-CTCTTGGAATAGTGTTTCACAAT-GGCATT---AAAAACA-TAC-----GGCGATAAA-CCGATTA--GTTTTCA-GGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT-GGCATTAGCAACCAT-CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGG-CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT-CCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCA-TC-GGAAATATTGGTACCGA] [+] EMBL AL697590 [CAGAATCGCCCAGGGTTA T AAC A ATTTGGACGAATTTCCG CTC TGGAATAGTGTTTCACAAT GGCATT AAAAACA TAC GGCGATAAA CCGATTA GTTTTCA GGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTCGGAAACTACTTGCGCCTCTTTAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGG TACTGGACTCTGGGCATTAGCAA CAT CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGA CGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCCGTGTCGGTACACACTTCCGAGCCAACGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGGCATGGGTCCCCGACGATGCCCAATTCGAGCCAACTGGACGCGGTGCCGCAAGCGA ACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTG ] [+] EMBL AL932276 [ ATCCCCCGAGGTTAACT AAC A ATTTGGACGAATTTCCG ATCTTGGAATAGTGTTTCACAAT GGCATT AAAAACA TAC GGCGATAAA CCGATAA GTTTTCA GGTAGAAGAAAATGGCGAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT GGCATTAGCAACCAT CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGG CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT CCCGACGATGCCCAATTCGAGCC ] [+] EMBL AL932793 [ cAGGTTAACTGAACTANCATTTGGACCAATTTCCGAATCTTGGAATAGTGTTTCACAATGGGCATTTAAAAAAACATTACCGGGGGGCGATAAACCCGAATAANCTTTTCANCGTAAAAGAAAATGGCGAATATTATTGCGTCGGTTCGCAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT GGCATTAGCAACCATACTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGG CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT CCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCA TC GGAAATATTGGTACCGA] [+] EMBL BM579706 [ ccgtgaagAACT AAC A ATTTGGACGAATTTCCG CTCTTGGAATAGTGTTTCACAAT GGCATT AAAAACC TAC GGCGATAAA CCGATTA GTTTTCA GGTAGAAGAAAATGGCGAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGCAGCCTGTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCTACTGGACTCT GGCATTAGCAACCAT CTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGACCGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGG CCGTGTCGGTACACACTTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGT CCCGACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAACCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCACACTGAACGTGGAGAATGCATCTCAGTCGGGAAATATTGGTACCGA] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7900#0 -----CCGCCCACGCGTC-----CGATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTC 50 consensus_7900#2 CAGAATCGCCCGAGGTTAACTAACAATTTGGACGAATTTCCGCTCTTGGAATAGTGTTTC 60 consensus_7900#1 -------------------------------GCAAG---CAGATC--GNCACGAGGCTNT 24 * * * * ** * * * * consensus_7900#0 ACAATGGCATTAAAAACCTACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGC 110 consensus_7900#2 ACAATGGCATTAAAAACATACGGCGATAAACCGATTAGTTTTCAGGTAGAAGAAAATGGC 120 consensus_7900#1 A--ATGGCATTAAAAACATACGGCGATAAACCGATAAGTTTTCAGGTAGAAGAAAATGGC 82 * ************** ***************** ************************ consensus_7900#0 GAATATTATTGTGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGG-CAGCCT 169 consensus_7900#2 GAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGG-CAGCCT 179 consensus_7900#1 GAATATTATTGCGTCGGTTCGGAGGTTGGAAACTACTTGCGCCTCTTCAGGGGGCAGCCT 142 *********** ***************************************** ****** consensus_7900#0 GTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCT 229 consensus_7900#2 GTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCT 239 consensus_7900#1 GTACAAAAAGTATCCGGGAATGTCCCGGCGCTTACTGACGAACGAGGAGCGCAAACGGCT 202 ************************************************************ consensus_7900#0 ACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGAC 289 consensus_7900#2 ACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGAC 299 consensus_7900#1 ACTGGACTCTGGCATTAGCAACCATCTGCTGTCGAGCTCTGTCTCGCTGTTAAAAGCGAC 262 ************************************************************ consensus_7900#0 CGAAGTACAGGATGTGCTCGATGGCAATGATGAAAAGTACAAGGCCGTGTCGGTACACAC 349 consensus_7900#2 CGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACAC 359 consensus_7900#1 CGAAGTACAGGATGTGCTCGATGGCAACGATGAAAAGTACAAGGCCGTGTCGGTACACAC 322 *************************** ******************************** consensus_7900#0 TTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCC 409 consensus_7900#2 TTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCC 419 consensus_7900#1 TTCCGAGCCACCGGCTCCGCGGGAAAGCAAATCAAGCAAGAAGCAACCGCCATGGGTCCC 382 ************************************************************ consensus_7900#0 GACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAA 469 consensus_7900#2 GACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAA 479 consensus_7900#1 GACGATGCCCAATTCGAGCCACCTGGACGCGGTGCCGCAAGCGACACCGATCAATCGGAA 442 ************************************************************ consensus_7900#0 CCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCAC 529 consensus_7900#2 CCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCAC 539 consensus_7900#1 CCGTGTGTACAACAAAAAGGTGCGCACCTTTCCGATGTGCTTCGACGATACCGATCCCAC 502 ************************************************************ consensus_7900#0 ACTGAACGTGGAGAATGCATCTCAGTCGGAAATATTGGTACCGATTCGTTTGGACATGGA 589 consensus_7900#2 ACTGAACGTGGAGAATGCATCTCA-TCGGAAATATTGGTACCGA---------------- 582 consensus_7900#1 ACTGAACGTGGAGAATGCATCTCAGTCGGAGATATTGGTACCGATATCGTAATGGACATG 562 ************************ ***** ************* consensus_7900#0 GATCGAAGGTCAAAAGCTGCGCGACACATTCACGTGGAATCGCAACGAATCTATGATTAC 649 consensus_7900#2 ------------------------------------------------------------ consensus_7900#1 GAGATCGAAGGTCAAAAGCTGCGCGACACAGTTCACGTGGAATCGCAACGAATCTATGAT 622 consensus_7900#0 ACCGGGAACAGTTTTGCCGAGGTGTTGTGCGATGATTTGGACCTTAA 696 consensus_7900#2 ----------------------------------------------- consensus_7900#1 ----------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||