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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7905#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1485 fasta sequence
[ACGCGAACGTGAAGGATCTGTCGCTGATCGAGGCGAAGCTGAGCTACATCCGGGCGTGGCAGAGCCTGCCCGAGTTCGGCGTCACGCTGTTCGTGATCAAGTTCGACGGGCACAAGAAGGAGGAGCTGCTCGGTGTCGCTAGCAACCGGATCATGAAGATGGACATTGCCACCGGCGACCATTTGAAGACGTGGCGATACAACACAATGAAGGCCTGGAACGTCAACTGGGAGATTCGGTGCATGATGGTACAGTTCCAGAACGAAACGGTCGTATTCTCCTGCCTGTCGGCGGACTGCAAAGTGATACACGAGTTCATCGGTGGCTACATCTTCATGTCAATGCGCTCGAAGGAAACGAACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA-TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA-AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT-CAAATTGCCTTACTTATTGATAATTAGAAGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT--AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAGCATGCATCTATGCCAACGATGGCAGTGAATGTGAATGTGTTTGTTCGTACGTTGTTTAGTATGTTTGTAATTGAGTTGGTCCCGTTTTCCTGCCTAATTTTAACACGCTACTGGTTAACAAAAACTTAACTTGAAACAGCAACAACTTAGTAGACGAACCGGCGAGCGACGCAACTGTCGAATGTAGACGCACCAAGCCCTTATCCGAAGCTACTTAACATGCTCGCACGGGGTGGCACTTAGCGAACAAC]
[+] EMBL BX625215 [ACGCGAACGTGAAGGATCTGTCGCTGATCGAGGCGAAGCTGAGCTACATCCGGGCGTGGCAGAGCCTGCCCGAGTTCGGCGTCACGCTGTTCGTGATCAAGTTCGACGGGCACAAGAAGGAGGAGCTGCTCGGTGTCGCTAGCAACCGGATCATGAAGATGGACATTGCCACCGGCGACCATTTGAAGACGTGGCGATACAACACAATGAAGGCCTGGAACGTCAACTGGGAGATTCGGTGCATGATGGTACAGTTCCAGAACGAAACGGTCGTATTCTCCTGCCTGTCGGCGGACTGCAAAGTGATACACGAGTTCATCGGTGGCTACATCTTCATGTCAATGCGCTCGAAGGAAACGAACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGAGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCT ]
[+] EMBL BX623327 [ GCTCGAAGGAAACGAACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAG ]
[+] EMBL BX603755 [ CTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCAATAACATGCCGTTCCCAAAACAA ACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCCGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACATAAAGCTTTTGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTCGATTTAGGGTATGTGCGACACGCGAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGC ]
[+] EMBL BM582032 [ ccgCAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTTCGTTTTGACTCTTTTGTTGTACTGTACATAACATTAGTTGATTAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAATCCAAATTGCCTTACTTATTGATAATTAGAAGCG ]
[+] EMBL BM634972 [ ccgAGAGAGTATAGCGTTTACTGTATAATCGTGTCCCTCTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACCCTTTCCGTTTGTATTCTTTTGAGCCGTTGCTTCGGGATGATGTTGTGGCAGTTGGACCAAAGATCGGCAGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTATGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTGGATTTAGGGTATGTGCGACACGCTAGCTCGGGCTTGGTGTCTTAGCTCCCCCGTGCGATTGGAACTA TTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT CAAATTGCCTTACTTATTGATAATTAGAAGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAG ]
[+] EMBL BM602503 [ ccggtacCTTTTGAGCCGTTGCTTCGGGATTATGTTGTGGCAGTTGGACCAAAGATCGGCCGGGTCCCATTGCTGTATCACAGTTTTCTTTGGCAAAACACAAAGCTTTTGTTGTCTAACAAATTTCTGCAGCAACAAGCAGAAGCAAAACCAATTCGATTTAGGGTATGTGCGACACGCGAGCTCGGGCTTGGTGTCTTAGCTCCAGCGTGCGATTGGAACTATTTTGTGTACGATTTTTAGCTAGCAATTGTTAAAAGAAATATTGGA AGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT CAAATTGCCTTACTTATTGATAATTAGAATCGAATGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACTAGAGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAGCA ]
[+] EMBL BX616301 [ TTTTAGCTAGCAATTGTTAAAAGAAATATTGGATAGCAAGCCCGAAGGAAAGCAAAAAGCGAAAATACAAT CAAATTGCCTTACTTATTGATAATTAGAAGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCGTATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTTGTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTAGCATGCATCTATGCCAACGATGGCAGTGAATGTGAATGTGTTTGTTCGTACGTTGTTTAGTATGTTTGTAATTGAGTTGGTCCCGTTTTCCTGCCTAATTTTAACACGCTACTGGTTAACAAAAACTTAACTTGAAACAGCAACAACTTAGTAGACGAACCGGCGAGCGACGCAACTGTCGAATGTAGACGCACCAAGCCCTTATCCGAAGCTACTTAACATGCTCGCACGGGGTGGCACTTAGCGAACAAC]
consensusID : consensus_7905#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 710 fasta sequence
[CAGAACCCCGAGTTAAACCAGACGCTCACGAGGCGCTATTCCACAAGCTTACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATACTTACGTTCTAGACTCTTATAGTTGTACTGTACATAACATTANTTGATTAGAGCAGTATAGACGTAATACTGTATAATCGTGTCCCTACTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACACCTTTCCGTTAGTATTCTATTAGAGCCGTATNGCTTACAGGGNTGATAGTTGTGGCAGTATGGACCAAAGATCGGCAGAGGTACCCATTGCTGTATCACAGAANACCTNTGGCAAAACACAAAGCATTATGTAGTCTAACANAATTTCTGCAGCAACAAGCAGAAGCAAAACCANATTGGATATANGGTATGTGCGACACGCTAGCTCGGGCTTTGGTGTCTTANCATCCAGACGTGCGATATGGAAACTAATATCTGGTGTACAGACAGTAATAAGACTAAGGCCACAAGGTTCACAAAAGCAACATAATNGGGGAANGCAAAGAACCGCACAGAGCAAACAGCCAAACAGCCGACAAAATACAATCCAAANTAGGCCCTTACCTTNATCTGCN]
[+] EMBL AL692720 [CAGAACCCCGAGTTAAACCAGACGCTCACGAGGCGCTATTCCACAAGCTTACGGGTGGCTGGAATTAGGGAGGTGAAAGGGGAGACGTCCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGTATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATACTTACGTTCTAGACTCTTATAGTTGTACTGTACATAACATTANTTGATTAGAGCAGTATAGACGTAATACTGTATAATCGTGTCCCTACTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACACCTTTCCGTTAGTATTCTATTAGAGCCGTATNGCTTACAGGGNTGATAGTTGTGGCAGTATGGACCAAAGATCGGCAGAGGTACCCATTGCTGTATCACAGAANACCTNTGGCAAAACACAAAGCATTATGTAGTCTAACANAATTTCTGCAGCAACAAGCAGAAGCAAAACCANATTGGATATANGGTATGTGCGACACGCTAGCTCGGGCTTTGGTGTCTTANCATCCAGACGTGCGATATGGAAACTAATATCTGGTGTACAGACAGTAATAAGACTAAGGCCACAAGGTTCACAAAAGCAACATAATNGGGGAANGCAAAGAACCGCACAGAGCAAACAGCCAAACAGCCGACAAAATACAATCCAAANTAGGCCCTTACCTTNATCTGCN]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7905#0 ACGCGAACGTGAAGGATCTGTCGCTGATCGAGGCGAAGCTGAGCTACATCCGGGCGTGGC 60
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 AGAGCCTGCCCGAGTTCGGCGTCACGCTGTTCGTGATCAAGTTCGACGGGCACAAGAAGG 120
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 AGGAGCTGCTCGGTGTCGCTAGCAACCGGATCATGAAGATGGACATTGCCACCGGCGACC 180
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 ATTTGAAGACGTGGCGATACAACACAATGAAGGCCTGGAACGTCAACTGGGAGATTCGGT 240
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 GCATGATGGTACAGTTCCAGAACGAAACGGTCGTATTCTCCTGCCTGTCGGCGGACTGCA 300
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 AAGTGATACACGAGTTCATCGGTGGCTACATCTTCATGTCAATGCGCTCGAAGGAAACGA 360
consensus_7905#1 ---------------------------------------CAGAACCCC-----GAGTTAA 16
** * * ** *
consensus_7905#0 ACCAGACGCTCAACGAGGAGCTATTCCACAAGCTAACGGGTGGCTGGAATTAGGGAGGTG 420
consensus_7905#1 ACCAGACGCTCA-CGAGGCGCTATTCCACAAGCTTACGGGTGGCTGGAATTAGGGAGGTG 75
************ ***** *************** *************************
consensus_7905#0 AAAGGGGAGACGTC-AATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGT 479
consensus_7905#1 AAAGGGGAGACGTCCAATAACATGCCGTTCCCAAAACAAACACACACACACAACCACAGT 135
************** *********************************************
consensus_7905#0 ATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATCTT--C 537
consensus_7905#1 ATGGCATGGCGATGCCTTGGCATAATTTTACTTGTTTTACGTGTAAACTTTAATACTTAC 195
****************************************************** * *
consensus_7905#0 GTTTT-GACTCTTTT-GTTGTACTGTACATAACATTAGTTGATTAGAG-AGTATAG-CGT 593
consensus_7905#1 GTTCTAGACTCTTATAGTTGTACTGTACATAACATTANTTGATTAGAGCAGTATAGACGT 255
*** * ******* * ********************* ********** ******* ***
consensus_7905#0 T-TACTGTATAATCGTGTCCCT-CTCCCTATCCATAGGGAGGGGAAGATCCCAATTAAC- 650
consensus_7905#1 AATACTGTATAATCGTGTCCCTACTCCCTATCCATAGGGAGGGGAAGATCCCAATTAACA 315
******************** ************************************
consensus_7905#0 CCTTTCCGTTTGTATTCTTTT-GAGCCGT--TGCTTC--GGGATGAT-GTTGTGGCAGT- 703
consensus_7905#1 CCTTTCCGTTAGTATTCTATTAGAGCCGTATNGCTTACAGGGNTGATAGTTGTGGCAGTA 375
********** ******* ** ******* **** *** **** ***********
consensus_7905#0 TGGACCAAAGATCGGCAGGGT--CCCATTGCTGTATCACAGTTT-TCTTTGGCAAAACAC 760
consensus_7905#1 TGGACCAAAGATCGGCAGAGGTACCCATTGCTGTATCACAGAANACCTNTGGCAAAACAC 435
****************** * ****************** ** ***********
consensus_7905#0 AAAGC-TTATGTTGTCTAACAAA-TTTCTGCAGCAACAAGCAGAAGCAAAACCAA-TTGG 817
consensus_7905#1 AAAGCATTATGTAGTCTAACANAATTTCTGCAGCAACAAGCAGAAGCAAAACCANATTGG 495
***** ****** ******** * ****************************** ****
consensus_7905#0 ATTTAGGGTATGTGCGACACGCTAGCTCGGGCTT-GGTGTCTTAGC-TCCAG-CGTGCGA 874
consensus_7905#1 ATATANGGTATGTGCGACACGCTAGCTCGGGCTTTGGTGTCTTANCATCCAGACGTGCGA 555
** ** **************************** ********* * ***** *******
consensus_7905#0 T-TGGAACTATTTGTGTACGAGTTTTAGCTAGCAATTGTTAAAAGAAATATTGGAAGCAA 933
consensus_7905#1 TATGGAA--ACTAATATCTGGTGTACAGACAGTAAT----AAGACTAAGGCCACAAGGTT 609
* ***** * * * * * * ** ** *** ** * ** ***
consensus_7905#0 GCCCGAAGGAAAGCAAAAAGCGAAAATACAATCAAATTGCCTTACTTATTGATAATTAGA 993
consensus_7905#1 CACAAAAGCAACATAATNGGGGAANGCA-AAGAACCGCACAGAGCAAACAGCCAAACAGC 668
* *** ** ** * *** * ** * * * * * ** **
consensus_7905#0 AGCGAAAGTAAAAGTATTGAGGCGGCACGGTGATTGCGTCGGATTTGCCGCAACCATCCG 1053
consensus_7905#1 CGACAAAATACAA-TCCAAANTAGGCCC-----TTACCTTN-ATCTGCN----------- 710
* *** ** ** * * *** * ** * * ** ***
consensus_7905#0 TATCAAGCGGGATTGAACGCGTAACGACAATCGTGTCCGCGATAGCCTTCCAAGCGGGTT 1113
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 GTAGTGGATCCTGTACTGTCTTCCTGTACCTTTTTGCAGGATAATCAAGTGACAAAAACT 1173
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 AGAGAGAGAAAAAAAAAACGGTGCCTCTTTGCAAAAGGATAATGGCTGACGTAGGCTGTA 1233
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 GCATGCATCTATGCCAACGATGGCAGTGAATGTGAATGTGTTTGTTCGTACGTTGTTTAG 1293
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 TATGTTTGTAATTGAGTTGGTCCCGTTTTCCTGCCTAATTTTAACACGCTACTGGTTAAC 1353
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 AAAAACTTAACTTGAAACAGCAACAACTTAGTAGACGAACCGGCGAGCGACGCAACTGTC 1413
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 GAATGTAGACGCACCAAGCCCTTATCCGAAGCTACTTAACATGCTCGCACGGGGTGGCAC 1473
consensus_7905#1 ------------------------------------------------------------
consensus_7905#0 TTAGCGAACAAC 1485
consensus_7905#1 ------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||