These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7909#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 6 consensus length = 1269 fasta sequence [CCGCATATTTTTTATATTTTG-CATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA-TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCATCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCGTGGTACA-GCACTTAGCTGGATAAGAGGAACGCCG-GCAGGTTTGTC-AAGCCAAGGTGCCCTTA-TTTCACATCGACTGGCGCGAAGATTGTGCATCGTCCGCAAGCCAATCGATTGGGGCCACCTGGCCGGATAACCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAACCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAGCTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCCACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTAGCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCGACCTCCTGCTTGGAGAGATTGATCGGTACCTTCTCCTTCAGTGTGCGGTTAGCTTGGTGGCCCATCTGCGTCTGCAGGAAGTGTTCGCACTGCTTTATCTGGCGCTCCTTTTCGTCCTTTGACCACTTTAGCTCCTCCGCCATGATGTCTGCAATCATGGGGAGCGCCTCGATAGCGGCCTGCACATTCAGGAACGACAGTCGCAAACGGCGCGAAATCATGTCCACGCAAGTGCAGGCATACTCGCGAATGCCGTAGCGCACCTCCGCATCAATGTACGGGAACTCCGGATGCAGCTTCTTGCCGCGGACGCGTGGGCGG] [-] EMBL BM641108 [CCGCATATTTTTTATATTTTGACATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCACCCCCTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAAGTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGcgg ] [+] EMBL CNS08L7T [ aTTTTAATTTG CATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCATCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCGTGGTACA GCACTTAGCTGGATAAGAGGAACGCCG GCAGGTTTGTC AAGCCAAGGTGCCCTTA TTTCACATCGACTGGCGCGAAGATTGTGCATCGTCCGCAAGCCAATCGATTGGGGCCACCTGGCCGGATAATCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAACCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAGCTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCCACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTAGCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCG ] [+] EMBL CNS08GP0 [ atTTTTA CATTTTGCATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCATCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCGTGGTACAGGCACTTAGCTGGATAAGAGGAACGCCGTTTTGGTTTGg ] [-] EMBL BM653229 [ gaATCGAATTATCCTTAGCCATTAATCTTAAAAACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCAGGTTCA TGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAAGTAACTTAATAATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAcgg ] [-] EMBL BM624221 [ ACATTTTTCAGGTTCA TGG TTTTGCAATTTCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATAATTTATGCGCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAATCGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGATCAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGGAGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGGAGCGAAGGTCATCTTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGCCGTGTTCGTGGTACA GCACTTAGCTGGATAAGAGGAACGCCG GCAGGTTTGTCAAAGCCAAGGTGCCCGCAGGTGCACATCGACTGGCGCGAAGATTGTGCATCGCCGGCAAGCCAATCGATTGGGGCCACCTGGCCGGATAACCCTGCTCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCgg ] [-] EMBL BM626034 [ GCCAATCGATTGGGGCCACCTGGCCGGATAACCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGATCTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAACCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAGCTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCCACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTAGCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCAACCTCCTGCTTGGAGAGATTGATCGGTACCTTCTCCTTCAGTGTGCGGTTAGCTTGGTGGCCCATCTGCGTCTGCAGGAAGTGTTCGCACTGCTTTATCTGGCGCTCCTTTTCGTCCTTTGACCACTTTAGCTCCTCCGCCATGATGTCTGCAATCATGGGGAGCGCCTCGATAGCGGCCTGCACATTCAGGAACGACAGTCGCAAACGGCGCGAAATCATGTCCACGCAAGTGCAGGCATACTCGCGAATGCCGTAGCGCACCTCCGCATCAATGTACGGGAACTCCGGATGCAGCTTCTTGCCGCGGACGCGTGGGCGG] consensusID : consensus_7909#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 395 fasta sequence [CCGCCCACGCGTCCGCGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC] [+] EMBL BM579252 [CCGCCCACGCGTCCGCGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAATCGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCGAAAAAAGCCGGTGGTGCCAAGGGATAAGACCTAGTCCTCGACCAACATCCGTAGAGGTTATTTATTGCGGTAAGAAAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTGCAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATACGAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGATCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC] consensusID : consensus_7909#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 139 fasta sequence [CCGCCTGCCTCGTTGTTGGCGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCCGCCCCCCAGGTGGTCTGTTGTGCGTGCGCGTTTTTTCTTTCGGTGCGTGAGATTTATTTTTCAAATCTTACCATTCAGTGTGT] [+] EMBL BM605916 [CCGCCTGCCTCGTTGTTGGCGGCAGGTGATACCTTTCCGTGCTCCCCACAGCCGCCGCCCCCCAGGTGGTCTGTTGTGCGTGCGCGTTTTTTCTTTCGGTGCGTGAGATTTATTTTTCAAATCTTACCATTCAGTGTGT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7909#0 CCGCATATTTTTTATATTTTGCATTTTGC-ATCGAATTATCCTTAGCCATTAATCTTAAA 59 consensus_7909#2 ------------------CCGCCTGCCTC-GTTG--TTGGCGGCAGGTGATACCTTTCCG 39 consensus_7909#1 CCGCCCACGCGTCCGCGAACGATTGCGTCTGCTATCTGCGCGGTGGGCTGCATCCCGAAT 60 * * * * * * * consensus_7909#0 AACTTTCTTCAAACGTAACGAAACAGAAAGCGTGAAATGTGCTATCAAGCACATTTTTCA 119 consensus_7909#2 TGCTCCCCACAGCCGCCGCCCCCCAGGTGGTCTG--TTGTGCGTGCGCGTTTTTTCTTTC 97 consensus_7909#1 CGCTCTGCACCGCCTCCGACATGCAGGTGCTGCCGCCAGCG-AAAAAAGCCGGTGGTGCC 119 ** * * *** * * * * * consensus_7909#0 GGTTCATGGTTTTTGCAATTCCACTTTTTTCGTTGTTTGTTTGTGGAAATTAACTTAATA 179 consensus_7909#2 GGTGCGTGAGATTTATTTTTCAAATCTTACCATTCAGTGTGT------------------ 139 consensus_7909#1 AAGGGATAAGACCTAGTCCTCGA---CCAACATCCGTAGAGGTTATTTATTGCGGTAAGA 176 * * ** * * * * consensus_7909#0 ATTTATGCTCATTGTTTGTATCGGGTAGTGCCGAACCCTGACGAAGCTTGCAAAGCCAAT 239 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 AAGCGAAACAGTGTGCACTCATCGCACCAACCAACACCAACACAGGGCAGCGAAGGAGTG 236 consensus_7909#0 CGATCAGATAGAAACAATGAAAGTAGTTGTACGAATAAATAAATTGTGAATTGTGAAGAT 299 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 CAGTCGCAGGCGGACGGTCCATAGAGTCCTAAGGTCCTGCTAGCAGCGGAAGCTGGATAC 296 consensus_7909#0 CAAAAGTAATTCGAATTTAAAATAATCTGTATCTTAACATCAATTCACCAACCAACAGGG 359 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 GAAATAGACGTACAACAAGGCAATGTATCTTCTACCAACGCACTGTTTCTATTGTTAAGA 356 consensus_7909#0 AGCACGTGGGAACTGCCGATGAGTAAGGTCTTTTATCGCGTTGGAGAGAAGCGAAGATCA 419 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 TCGTATTGTGTCTGATTTAATAAAGTAATGTGACTTTAC--------------------- 395 consensus_7909#0 TCCTGGGTGTTATGCAAGCAACCATAAGTTATCCATTGTCACAAATAACAGTCGTGTTCG 479 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 TGGTACAGCACTTAGCTGGATAAGAGGAACGCCGGCAGGTTTGTCAAGCCAAGGTGCCCT 539 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 TATTTCACATCGACTGGCGCGAAGATTGTGCATCGTCCGCAAGCCAATCGATTGGGGCCA 599 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 CCTGGCCGGATAACCCTGCCCGGGCGCTTATAAGCCACCTCCAGATCGCTCGATGGTGAT 659 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 CTGCTTCTTGAGACGTTCCTGCTCCTTGCGGATTTCTTCCTGTTCCGCCACCGCAGCAAA 719 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 CCGAGAGTGCGATACAAATCCGGACTTGATTGCCGACATCATCTGTAGGTACTCCTCCAG 779 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 CTCGACCTGTCCGTTCATGTTGGTGTCGATTTCCTTGAGAATGTCGTGCAGCTCTTCGCC 839 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 ACTGACCTCCGCATCGCCGAACGACTTCATTGCGCGCTTAATGTCGGTGATCGACACGTA 899 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 GCCCTTCTTCTCCTTGTCGATCGTTTCGAAGCGCTTCACGTACATGTCGACCTCCTGCTT 959 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 GGAGAGATTGATCGGTACCTTCTCCTTCAGTGTGCGGTTAGCTTGGTGGCCCATCTGCGT 1019 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 CTGCAGGAAGTGTTCGCACTGCTTTATCTGGCGCTCCTTTTCGTCCTTTGACCACTTTAG 1079 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 CTCCTCCGCCATGATGTCTGCAATCATGGGGAGCGCCTCGATAGCGGCCTGCACATTCAG 1139 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 GAACGACAGTCGCAAACGGCGCGAAATCATGTCCACGCAAGTGCAGGCATACTCGCGAAT 1199 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 GCCGTAGCGCACCTCCGCATCAATGTACGGGAACTCCGGATGCAGCTTCTTGCCGCGGAC 1259 consensus_7909#2 ------------------------------------------------------------ consensus_7909#1 ------------------------------------------------------------ consensus_7909#0 GCGTGGGCGG 1269 consensus_7909#2 ---------- consensus_7909#1 ---------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||