These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7911#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1285 fasta sequence [TCGCATTCGCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAG-ACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA-TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA-TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA-C-CTGA-CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCACACGGAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAAAGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCCAAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGACAACGACGATGAGGGGGTATACTTTTGATCTGCTGCTCGTGTGTCCTGATTTCAGTATAAGGCGATGGTTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTGGAACCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAAT] [+] EMBL CNS09GT9 [TCGCATTCGCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAG ACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA C CTGA CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCACACGGAACCGGGA ] [+] EMBL CNS0998K [ GCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGTTCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAC ACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCATTTGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGAAAa ] [+] EMBL BM580472 [ cCGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGGCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAGCACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTATTTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGGATATATCGCATTGGGACGCAATT ] [+] EMBL BM613823 [ ccgCGGCGTCGAACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATCCTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACATTATGGCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAATAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAGCACGACAAATACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTTCTCCTGCATACCA TCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGGATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCG ] [-] EMBL CNS0998L [ AATAATTTGCAAAAAGTTTGCAACGAAGCGAAGGATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGACCAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTA TTGAGGCTTACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA C CTGA CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAGCGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCATACGAAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAAAGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCCAAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGACAACGACGATGAGGGGGTATACTTTTGATCTGCTGCTCGTGTGTCCTGATTTCAGTATAAGGCGATGGTTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTGGAACCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTA ] [+] EMBL BX612076 [ TTATGAATATTCTTGCGGAATGGATATATCGCATTGGGACGCAATTCAGAAGAAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAGAAGCATTGCAGAAAAACCCCTTAATGAGCCAACCGATGCCGAA C CTGA CGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGT ] [-] EMBL CNS09GTA [ gcgCGAAGCGCTGAGCGAGCAAAAGAGGTCGAATGAAACCACTGGAGAAACAATGAAGCTAACTTGCTTACTTCATCCCCAAGACTTTGTACTTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTGGAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTATGCAGGAGCTATACAAAGGATTCCTAAGCGTGACATCCACACGGAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAAAGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCCAAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGACGACGACGATGAGGGGGTATACTTTTGATCTGCTGCTCGTGTGTCCTGATTTCAGTATAAGGCGATGGTTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTGGTACCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAAT] consensusID : consensus_7911#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 797 fasta sequence [TGCGTGAATGACAGGAAATGAAAGAGATGAAAAGTTTACATATTCAGAATTTCTTGACAAATTAGAAACATCTTGCGTTTTTCGGCAAATTCTACTTTCCATGGTTGCATAATGTACTTATGAGATTATTCCAGCAAATAGTTTGTGTTTGGTTTCATCCAAGGGCATTTTCAAAATCCGTTTTCAAATAATATTTTAGGTTGTGTTTTACTAGATTTTTACACTGAAGCCGTTTGAAAATTTTTGATGTAAACTAAAATTTAAATTTTAATGAAATTTGCTTTCCGCTCAAATTGTGTATTTTTTCGCAGGCGGTTAGAGTGTGTAGTTATTCCGTTCCTTTGAGTATCACTGAAATCGTTATTGCACTAAGTTAAACTGTCTTATAAACAATTTCCTAAACTTAAACAAATGCTAATAACGAAACACATCAATTCCTCCATCCCTGATTCTGACAAAGGCAATGAGACAATTTGATTTGTTTTTTTTTATAAATGTCGATTCTTTTGTCGTTTGTGTGCTGAGTTTGACCTGCTTGACCTGATTTCTAGATAGTTTAATCCACGTTAAATGATCATATTAGGGTAGTTAAGGCAGAAAAATCATAAAATACCCTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTCGAACGCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAATAACAAATATATAGANGTATTTCTGGTAATTGCGAATGG] [+] EMBL BX625217 [TGCGTGAATGACAGGAAATGAAAGAGATGAAAAGTTTACATATTCAGAATTTCTTGACAAATTAGAAACATCTTGCGTTTTTCGGCAAATTCTACTTTCCATGGTTGCATAATGTACTTATGAGATTATTCCAGCAAATAGTTTGTGTTTGGTTTCATCCAAGGGCATTTTCAAAATCCGTTTTCAAATAATATTTTAGGTTGTGTTTTACTAGATTTTTACACTGAAGCCGTTTGAAAATTTTTGATGTAAACTAAAATTTAAATTTTAATGAAATTTGCTTTCCGCTCAAATTGTGTATTTTTTCGCAGGCGGTTAGAGTGTGTAGTTATTCCGTTCCTTTGAGTATCACTGAAATCGTTATTGCACTAAGTTAAACTGTCTTATAAACAATTTCCTAAACTTAAACAAATGCTAATAACGAAACACATCAATTCCTCCATCCCTGATTCTGACAAAGGCAATGAGACAATTTGATTTGTTTTTTTTTATAAATGTCGATTCTTTTGTCGTTTGTGTGCTGAGTTTGACCTGCTTGACCTGATTTCTAGATAGTTTAATCCACGTTAAATGATCATATTAGGGTAGTTAAGGCAGAAAAATCATAAAATACCCTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATGGTTATTTAATGGATGATCACAATTCTCGAACGCTACGCTACTGTATTCTTTCAGAATTGTAAAAAAATCTTTGCACCTTATTCTACCGCTTAAATAACAAATATATAGANGTATTTCTGGTAATTGCGAATGG] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7911#0 TCGCATTCGCTTCAGTTCATCATAGATCGTCCATTCGCCGGGAAAATAACACGGCGTCGA 60 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 ACGTTGTTCTTGCGGAAAATTGCGGATTGCCGAAATTCATTCACATTTAGCTATTCTATC 120 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 CTTCTGCGCGAAAAGTTCGGATCCCGAAATGAGTGGATATCGCGGAAATAAACGCCAACA 180 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 TTATGTCAAAGGCAGTGCTCGGCGCGGAAGAGATCACGAAAATGTGGCAGTGGATGAAAA 240 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 TAATCCGATCATACAGTGTTTCCGCGAATATGCTACAATACTAGACGCGAAGACGACAAA 300 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 TACGAACGCATCGTGAAAATCAGCCGGGATATAACGATCGAATCCAAGCGAATTATCTTT 360 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 CTCCTGCATACCATCGATCCTAGGAAAAATAATTTGCAAAAAGTTTGCAACGAAGCGAAG 420 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 GATCGACTGGAAGCTATTTTTCGCAATCATTTTGTTAACATAGCAAAAGAGCTTAAGGAC 480 consensus_7911#1 ------------------------------------------------------------ consensus_7911#0 CAGGACCCTTACCAGTATACACGAGCCTACACCAATGGAATGCAAGAATTTATTGAGGCT 540 consensus_7911#1 ---------------------TGCGTGAATGACAG-GAAATGAAAGAGATGA--AAAGTT 36 * * * ** * **** **** * * * * * consensus_7911#0 TACACATTTTATGAATATTCTTGCGGAATGAATATATCGCATTGGGACGCAATTCAGAAG 600 consensus_7911#1 TACATATTC--AGAATTTCTTGACAAATTAGAAACATC---TTG---CGTTTTTCGGCAA 88 **** *** **** * * * * * * * *** *** ** *** * * consensus_7911#0 AAGCTGACTTATTCATCGGACCAAAACGTCGATTCACCAAGCAATGCTAG-AAGCA--TT 657 consensus_7911#1 ATTCT-ACTT-TCCATGGTTGCATAATGT--ACTTATGAGATTATTCCAGCAAATAGTTT 144 * ** **** * *** * ** ** ** * * * * ** * ** ** * ** consensus_7911#0 GCAGAAAAACCCCTTAATGAGC--CAACCGATGCCGAACCTGACGAGCAAAAGAGGTCGA 715 consensus_7911#1 GTGTTTGGTTTCATCCAAGGGCATTTTCAAAATCCGTTTTCAAATAATATTTTAGGTTGT 204 * * * * * ** * * *** * * * **** * consensus_7911#0 ATGAAACCACTGGAGAAACAATGAAGCTGACTTGCTTACTTCATCCCCAAGACTTTGTAC 775 consensus_7911#1 GTTTTACTAG-ATTTTTACACTGAAGCCG-TTTGAAAATTTT-TGATGTAAACTAAAATT 261 * ** * *** ****** * *** * ** * * *** consensus_7911#0 TTGGTCTGGGTGATCTTAGCGGCGAGATAATGCGAACGTGCATTAATTCTCTTGGATCTG 835 consensus_7911#1 TAAATTTTAATGAAATTTGCTTTCCGCTCA---AATTGTGTATTTTTTCGCAGGCGGTTA 318 * * * *** ** ** * * * * *** *** *** * * * consensus_7911#0 GAAATTCGGAGAGCTGTTTTCTGCATTGTCGTTTTA-TGCAGGAGCTATACAAAGGATTC 894 consensus_7911#1 GAG---TGTGTAGTTATTCCGTTCCTTTGAGTATCACTGAAATCGTTATTGCACTAAGT- 374 ** * ** * ** * * ** ** * * ** * * *** * * * consensus_7911#0 CTAAGCGTGACATCCACACGGAGCCGGGATTTTTCTCATAAGATGATGACTTTACGGCAA 954 consensus_7911#1 -TAAAC-TGTCTTATAAACAATTTCCTAAACTTAAACAAATGCTAATAACGAAACACATC 432 *** * ** * * * ** * * ** ** * * * ** ** ** consensus_7911#0 AGTTTGCTCAAAAGTGAGAACGTTTGCTACAATGTGACGGTACGAGGAGGTGAAGCGGCC 1014 consensus_7911#1 AATTCCTCCATCCCTGATTCTGACAAAGGCAATGAGACAATTTGATTTGTTTTTTTTTAT 492 * ** ** *** * ***** *** * ** * * consensus_7911#0 AAATGGGGAACTACAGATGAAACATCGGGAGCCATGTTCCAGCTGCAGCCTTCAAAGGAC 1074 consensus_7911#1 AAATGTCGATTCTTTTGTCGT---TTGTGTGCTGAGTTTGACCTG----CTTGACCTGAT 545 ***** ** * * * * ** *** * *** *** * ** consensus_7911#0 AACGACGATGAGGGGGTATACTTTTGATCTGC-TGCTCGTGT-GTCCTGATTTCAGTATA 1132 consensus_7911#1 TTCTA-GATAGTTTAATCCACGTTAAATGATCATATTAGGGTAGTTAAGGCAGAAAAATC 604 * * *** * ** ** ** * * * * ** ** * * ** consensus_7911#0 AGGCGATGGT-TAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATG 1191 consensus_7911#1 ATAAAATACCCTAAACTTTATTGATTTATAAGAAAAATGTCTTTGTGGGATGGATCGATG 664 * ** ************************************************* consensus_7911#0 GTTATTTAATGGATGATCACAATTCTGGAAC-CTACGCTACTGTATTCTTTCAGAATTGT 1250 consensus_7911#1 GTTATTTAATGGATGATCACAATTCTCGAACGCTACGCTACTGTATTCTTTCAGAATTGT 724 ************************** **** **************************** consensus_7911#0 AAAAAAATCTTTGCACCTTATTCTACCGCTTAAAT------------------------- 1285 consensus_7911#1 AAAAAAATCTTTGCACCTTATTCTACCGCTTAAATAACAAATATATAGANGTATTTCTGG 784 *********************************** consensus_7911#0 ------------- consensus_7911#1 TAATTGCGAATGG 797 |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||