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These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7915#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 7 consensus length = 1587 fasta sequence
[GATAGCGGACAAAACAGGGGTGCAGAATGCCGACAAACAACGCACGTTCTTTCGAACGGGATTTAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTG-TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGA-GGGAAAT-AAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAAGAGGAAAAAAAACGAAGGAAGCCAGCTTACTCAAAGAAAAAACAGAAAAACAATTATCATGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAGGGAAATAAAAACGTATCGACTACTTTTGCTTCCGAGCGTAACGATTCGGCTACTGTCGGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAATGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAACCTGTGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTCCACTACGGCCCCACCGACATACTGGACGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACTTCGGGAACACGGACGCGATCCGGCTGCCTGGCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCACAAAAAGGAAGCCTTACGGCAGCGAAG-GTAA-TGCTGGTGCGAAATCTTGAGGATGTGCCAGAACGGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAGTGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAGTTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGG-ATGATTCGAAATCCTCGTACGCCGGAATATTGCGATTATTGCATCCGATTGCGTGTCCAAGGCATGTAACCATGGAACCACTTGCTGTTGTCATGCTGTCGAAGAGAAAAAAAATTGTAAACAATATGCTCCTTCTCTTTTCCACTACCGATCTGTCACGCTTCTTGCGCTCCCAGATGTTTGCACTAAAACTGTCGCACGTTTCGCACATCTGTCAAACTACTTACCACAGAAACTGTTCTTTAAATTAAAGCCTAAATTTTTATTCGGACGATAGAGATTTTTCCCACATAGCTAAGACGAATAAATGAACTGAATTCGCATGGAACCAACAAGCTGTTGTCA]
[+] EMBL CNS08E3B [GATAGCGGACAAAACAGGGGTGCAGAATGCCGACAAACAACGCACGTTCTTTCGAACGGGATTTAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTG TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGA GGGAAAT AAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAAGAGGAAAAAAAACGAAGGAAGCCAGCTTACTCAAAGAAAAAACAGAAAAACAATTATCATGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAGGGAAATAAAAACGTATCGACTACTTTTGCTTCCGAGCGTAACGATTCGGCTACTGTCGGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAATGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAACCTGTAAAAAAAGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTCCACTACGGCCCCACCGACATACTGGATGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACTTTGGGAACACGGACGCGATCCGGCTGCCCGGCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCACAAAAAGGAAGCCTTACGGCAGCGAAG GAAATTGCTGGTGCGAAATCTTGAGGATGT ]
[+] EMBL CNS09BJ9 [ cAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTGTTCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGAGGGGAAAT AAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGG ]
[+] EMBL CNS098Y0 [ TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCAGA GGGAAATAAAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTCGCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAAGAGGAAAAACTACGAAGGAAGCCAGCAAACTCAAAGAAAAAACAGAAAAACAATTATCATGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAGGGAAATAAAAACGTATCGACTACTTTTGCTTCCGAGCGTAACGATTCGGCTACTGTCGGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAATGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAACCTGTGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTCCAC ]
[+] EMBL BM605956 [ ccGCCACAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCGCCTACCCAACCGTAGATCAAAACCTATGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCCTGAACCCGGAACCATACTGTTCCTTCACTACGGCCCCACCGACATACTGGACGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACTTCGGGAACACGGACGCGATCCGGCTGCCTGGCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCAGCAAAAGGAAGCCTTACGGCAGCGAAGCGTAA TGCTGGTGCGAAATCTTGAGGATGTGCCGGCACGGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGCATGCACGAGCCGAGCAATGTCAGTGCCACAGCGGAAGCGGAACGCTTGTTGCAGAAGCTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTACCCGGCTGACGGATAATGTGTTCCGAATTGTTTGAGGAAGTTAGCTGGTGGAGAGGTCCAGCAAAGCAGCGGTTGTGTTCCCATCGGAAGGATTCGAAGTCCTCGTACGCCGGAATATTGCGATTATTGCA ]
[+] EMBL BX605109 [ ACGGGACGGGCTCATTGACAGTGTGATCGCGGTAACGACCAGCCACATCGGGAACACGGACGCGATCCGGCGGCCTGGCGCACACTTCAAGCGGTCCGACATCCAGC ]
[-] EMBL CNS08E3C [ GTAA TGCTGGTGCGAAATCTTGAGGATGTGAAAGAACCGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAGTGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAGTTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGG ATGAACCGAAATCCTCGTTTTTCGGAATATTGCGATTATTGCATCCGATTGCGTGTCCAAGGCATGTAACCATGGAACCACTTGCTGTTGTCATGCTGTCGAAGAGAAAAAAAATTGTAAACAATATGCTCCTTCTCTTTTCCACTACCGATCTGTCACGCTTCTTGCGCTCCCAGATGTTTGCACTAAAACTGTCGCACGTTTCGCACATCTGTCAAACTACTTACCACAGAAACTGTTCTTTAAATTAAAGCCTAAATTTTTATTCGGACGATAGAGATTTTTCCCACATAGCTAAGACGAATAAATGAACTGAATTCGCATGGAACCAACAAGCTGTTGTCA]
[-] EMBL CNS098Y1 [ TGAGGATGGGCCAGAGGGGTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGTCATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAGTGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGCAGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAGTTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGG ATGATTCGAAATCCTCGTACCCCGGAATATTGCGATTATTGCATCCGATTGCtttt ]
consensusID : consensus_7915#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 645 fasta sequence
[CCAACACAACAGGTCCGAACATGACCACAGACGGAGACATCAATGCTTCAGAGGGAAATAACAATGTTGCGTCTACTTTTGTTTCCAAGCGTAACAATTCGGCTGCTGCCGGCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGTTATGCTCCCCAAGAGGAACAGGTACGAAGGAAGACAGCGAATTCAAAGAAAGCACAGAAAAACAATAATCGTGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAACATCCATAGTTCAGAGGGAAATAAAAACGTTTTGACGACTTTTTTTGCTTCCGAGCGTAACNATTCGGCTACTGTCGGCGAATGCGCGGATGATGAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAAGAGAGAGAAGTACCAACTAACACAGCTAGCCCAAAGGAAAAGCCGAAACCTGCACCAACGCTGGAAACGGAGAAAAGTGGAGGGAGTGTCTGGATTGGTAGATTGACAACTGTGATATTTATTATAATTGCCTTCCTCGNTTGTTTCATGCCNCAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCCGCCTACCCAACCGTAAATCAAAACCTATGGCAGATG]
[+] EMBL BX628879 [CCAACACAACAGGTCCGAACATGACCACAGACGGAGACATCAATGCTTCAGAGGGAAATAACAATGTTGCGTCTACTTTTGTTTCCAAGCGTAACAATTCGGCTGCTGCCGGCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGTTATGCTCCCCAAGAGGAACAGGTACGAAGGAAGACAGCGAATTCAAAGAAAGCACAGAAAAACAATAATCGTGATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAACATCCATAGTTCAGAGGGAAATAAAAACGTTTTGACGACTTTTTTTGCTTCCGAGCGTAACNATTCGGCTACTGTCGGCGAATGCGCGGATGATGAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAAGAGAGAGAAGTACCAACTAACACAGCTAGCCCAAAGGAAAAGCCGAAACCTGCACCAACGCTGGAAACGGAGAAAAGTGGAGGGAGTGTCTGGATTGGTAGATTGACAACTGTGATATTTATTATAATTGCCTTCCTCGNTTGTTTCATGCCNCAAAGCAAACCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCCGCCTACCCAACCGTAAATCAAAACCTATGGCAGATG]
consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment
consensus_7915#0 GATAGCGGACAAAACAGGGGTGCAGAATGCCGACAAACAACGCACGTTCTTTCGAACGGG 60
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 ATTTAATTTCAGGGTCCAACGAGGCGCCCTCCCTTGCGGAACGATCCAGAACAGCTGGTG 120
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 TCGATCAGAGACAACACAACCGGCCCGAACATGACCACAGACGGAGACATCAATGGTTCA 180
consensus_7915#1 ----------CCAACACAACAGGTCCGAACATGACCACAGACGGAGACATCAATGCTTCA 50
********* ** ******************************* ****
consensus_7915#0 GAGGGAAATAAAAGTGTTGCGTCTACTTGTGCTTCCGAGTGTAACAATTCGGCTGCTGTC 240
consensus_7915#1 GAGGGAAATAACAATGTTGCGTCTACTTTTGTTTCCAAGCGTAACAATTCGGCTGCTGCC 110
*********** * ************** ** **** ** ****************** *
consensus_7915#0 GCCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGCTATGCTCCCCAA 300
consensus_7915#1 GGCGAATGCACGGATGATGAGGATGCTTATTTTAAGAAGGAAGGAAGTTATGCTCCCCAA 170
* ********************************************* ************
consensus_7915#0 GAGGAAAAAAAACGAAGGAAGCCAGCTTACTCAAAGAAAAAACAGAAAAACAATTATCAT 360
consensus_7915#1 GAGGAACAGGTACGAAGGAAGACAGCGAATTCAAAGAAAGCACAGAAAAACAATAATCGT 230
****** * ********** **** * ********* ************* *** *
consensus_7915#0 GATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAGCATCCATAGTTCAGAG 420
consensus_7915#1 GATAGAGCCAGCACACCAGGCCCGAACATGACCACGAACGGAAACATCCATAGTTCAGAG 290
******************************************* ****************
consensus_7915#0 GGAAATAAAAACGTATCGACTACTTTT---GCTTCCGAGCGTAACGATTCGGCTACTGTC 477
consensus_7915#1 GGAAATAAAAACGTTTTGACGACTTTTTTTGCTTCCGAGCGTAACNATTCGGCTACTGTC 350
************** * *** ****** *************** **************
consensus_7915#0 GGCGAATGCACGGATGATAAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAA 537
consensus_7915#1 GGCGAATGCGCGGATGATGAGGACTCTTCTTTTGATGAGGAAGAAAGCTATGCTCCCCAA 410
********* ******** *****************************************
consensus_7915#0 TGGACAACTGTGATAGTTATTATAATTCCCTTCCTCGTTTGTTTCATGCTACAAAGCAAA 597
consensus_7915#1 GAGAGAGAAGTACCAACTAACACAGCTAGCCCAAAGGAAAAGCCGAAACC-TGCACCAA- 468
** * ** * ** * * * * * * * * ***
consensus_7915#0 CCGGTGGAAGGTGAACCATTCTATAAGCTAGGAACCACCTACCCAACCGTAGATCAAAAC 657
consensus_7915#1 -CGCTGGAAACGGAG------AAAAGTGGAGGGAGTGTCTGG--ATTGGTAGATTGACAA 519
** ***** ** * * *** * ** * ****** * *
consensus_7915#0 CTGTGGCAGATGCTGAGCGTTAGTGTGCGGCGTGCCATCACCACCGTCGACAATCC--TG 715
consensus_7915#1 CTGTGATATTTATTATAATTGCCTTCCTCGNTTGTT-TCATGCCNCAAAGCAAACCGGTG 578
***** * * * * * * ** *** * *** ** **
consensus_7915#0 AACCCGGAACCATACTGTTCCTCCACTACGGCCCCACCGACATACTGGACGGGCTCATTG 775
consensus_7915#1 GAAGGTGAACCATTCTATAAGCTAGGAACCCGCCTACCCAACCGTAAATCAAAACCTATG 638
* ******* ** * ** ** *** * * * **
consensus_7915#0 ACAGTGTGATCGCGGTAACGACCAGCCACTTCGGGAACACGGACGCGATCCGGCTGCCTG 835
consensus_7915#1 GCAG-ATG---------------------------------------------------- 645
*** **
consensus_7915#0 GCGCACACTTCAAGCGGTCCGACATCCAGCAAGACTTTGGCGTGTTTGTGGCGCACAAAA 895
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 AGGAAGCCTTACGGCAGCGAAGGTAATGCTGGTGCGAAATCTTGAGGATGTGCCAGAACG 955
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 GTCAGCTCGAGCATTCCACACGATTTGTGACACGCAGGAGCCACTGGTGGGCAGGGCGGT 1015
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 CATTTATCTAACGCTCGATATGGCCAAGGCAGCTGGTATGCACGAGCCGAGCAATGTCAG 1075
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 TGCCACAGAGGAAGCGGAACGCTTGTTGCAGAAGTTGTGGGGAGATTCGTTAGAACCGGC 1135
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 AGTGCTAGGACCGCTGATTGCCCGGCTGACGGATAATGTGTTCCGGATTGTTTGAGGAAG 1195
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 TTAGCTGGTAGAGAGGACCAGGAAAGCAGCGGTTGTGTTCCCATCGGATGATTCGAAATC 1255
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 CTCGTACGCCGGAATATTGCGATTATTGCATCCGATTGCGTGTCCAAGGCATGTAACCAT 1315
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 GGAACCACTTGCTGTTGTCATGCTGTCGAAGAGAAAAAAAATTGTAAACAATATGCTCCT 1375
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 TCTCTTTTCCACTACCGATCTGTCACGCTTCTTGCGCTCCCAGATGTTTGCACTAAAACT 1435
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 GTCGCACGTTTCGCACATCTGTCAAACTACTTACCACAGAAACTGTTCTTTAAATTAAAG 1495
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 CCTAAATTTTTATTCGGACGATAGAGATTTTTCCCACATAGCTAAGACGAATAAATGAAC 1555
consensus_7915#1 ------------------------------------------------------------
consensus_7915#0 TGAATTCGCATGGAACCAACAAGCTGTTGTCA 1587
consensus_7915#1 --------------------------------
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| Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||