These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7919#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 996 fasta sequence [CAGACAGACCATTCCCTCGACAGCTCCACCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGACCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAAACTGGAGCACCACTTCACATCTCAAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACAGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAACGGACCGGCGGACGGGTATCGCAGCTCGCCGAAGCCCCACTCGTCGCCGAAGATGAAGCTGAGGTACATGAAGAGCATCTTCCCGAAGGCGGAGGAAACGCTCATCCTGGACGTGCTGGCC] [+] EMBL AGA281961 [CAGACAGACCATTCCCTCGACAGCTCCACCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTT GGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATTCGCGGGCCAGGATt ] [+] EMBL BM635435 [ CCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAAACTGGAGCACCACTTCACATCTCAAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACAGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGG ] [+] EMBL BM585609 [ CCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAAACTGGAGCACCACTTCACATTTCGAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAA CAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACa ] [+] EMBL BX613436 [ GTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAATCCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAACGGACCGGCGGACGGGTATCGCAGCTCGCCGAAGCCCCACTCGTCGCCGAAGATGAAGCTGAGGTACATGAAGAGCATCTTCCCGAAGGCGGAGGAAACGCTCATCCTGGACGTGCTGGCC] consensusID : consensus_7919#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 561 fasta sequence [CCGGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTAGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAAACGGACCGGCGGACGGGGTATCGCAGCTTCGCCG] [+] EMBL BM629563 [CCGGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTAGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAAACCCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCTGCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCACCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCTCGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAGCGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAAACGGACCGGCGGACGGGGTATCGCAGCTTCGCCG] consensusID : consensus_7919#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 486 fasta sequence [CGGCACGAGGACAANTNCAGTGCTGTTTTGTGTACGGTTTTGGCTTCAAGACGGTCGTTATGTGTGACGCTCCGCTAGCCTAAATTCCCGCGCCTTCGCCAGTGGAGCAGAAGAAGCACCGAACTTCCGCGCAGTCGCAGACAGACCATGGNCCCTCGNACAGCTCCAGCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGNCANAAGATACGCAAACAGCAAAACTNNAGCACCAACTTCACATCTCAAAACGATANCATTTTCCATGCAGCCAGTGCATGGNNCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCA] [+] EMBL BX619775 [CGGCACGAGGACAANTNCAGTGCTGTTTTGTGTACGGTTTTGGCTTCAAGACGGTCGTTATGTGTGACGCTCCGCTAGCCTAAATTCCCGCGCCTTCGCCAGTGGAGCAGAAGAAGCACCGAACTTCCGCGCAGTCGCAGACAGACCATGGNCCCTCGNACAGCTCCAGCAGCACGTCGCAGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTGAACCCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGNCANAAGATACGCAAACAGCAAAACTNNAGCACCAACTTCACATCTCAAAACGATANCATTTTCCATGCAGCCAGTGCATGGNNCTCCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCA] consensusID : consensus_7919#3 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 392 fasta sequence [TTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATTGTTAGGAAAAGGCAGTGCTATTGATGAGTCCAACCCGGACGTATAAACGAGATGAAGTGAAATGACAGCTAGGGAAAGTGACAGATGAAATGACAGGGAAACGGTTGCACGCGCTTCAAACCAGTAGCGAGTGAAGCGAGCAGCAGGTGACACCGTTTTAAAGTTTTATTGCTATTTTATTTGGATTTATTTGTATTTGTCTTCAGGAGAATAAATAGTTAAACTAAAAAAAA] [-] EMBL AGA280263 [TTGCAACAGCAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGATGGGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAAACCGATCTCACGGTCGCTAAAATTAACTCCATTGTTAGGAAAAGGCAGTGCTATTGATGAGTCCAACCCGGACGTATAAACGAGATGAAGTGAAATGACAGCTAGGGAAAGTGACAGATGAAATGACAGGGAAACGGTTGCACGCGCTTCAAACCAGTAGCGAGTGAAGCGAGCAGCAGGTGACACCGTTTTAAAGTTTTATTGCTATTTTATTTGGATTTATTTGTATTTGTCTTCAGGAGAATAAATAGTTAAACTAAAAAAAA] consensusID : consensus_7919#4 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 1 consensus length = 110 fasta sequence [TCGCTGTCATTTCATCTGTCACATACACAAGCTGTCATTTCACTTCATCTCGTTTATACGTCCGGGTTGGACTCATCAATAGCACTGCCTTTTCCTAACAGGGAGGGAAT] [+] EMBL AGA281958 [TCGCTGTCATTTCATCTGTCACATACACAAGCTGTCATTTCACTTCATCTCGTTTATACGTCCGGGTTGGACTCATCAATAGCACTGCCTTTTCCTAACAGGGAGGGAAT] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7919#0 CAGACAGACCATTCCCTCGACAGCTCCACCAGCACGTCGCAGCAGCATAACAGCGTTTGA 60 consensus_7919#1 ------------------------------------------------------------ consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 AGGCATTAATCTGACCGGAAGCGTGCAGTGAAAAGCATGTCCGAGCAAATGGAGCAAGTA 120 consensus_7919#1 ------------------------------------------------------------ consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 GGGCTACCGCCCGGTTGGGATTGTAAATACGATTCCAGAACAGGTCGCTACTACTACGTG 180 consensus_7919#1 ------------------------------------------------------------ consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 AACCTGTTCACCAAAACGACGCAATGGGAGGATCCGCGGGCCAGGATCCGTCAGCTGCAA 240 consensus_7919#1 ------------------------------------------------------------ consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 ACTGGAGCACCACTTCACATCTCAAACGATAGCATTTCCATGCAGCCAGTGCATGGTTCT 300 consensus_7919#1 ------------------------------------------------------------ consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 CCCTATCATGTGTACCCCGCCAGTAACTCGTTCTATCCAGCCCAGGCCGCCTTCCAGAAT 360 consensus_7919#1 -----------------------------------------CCGG--CGTGCAGTGAAAA 17 consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 CCACCCTCCGGTGTGCCGAGCCTTAATGCTAGCCCCAACCTTGCCCAAAGATTGCAACAG 420 consensus_7919#1 GCATGTCCGAGCAAATGGAGC---AAGTAGGGCTACCGCCCGGTT--GGGATTGTAAATA 72 consensus_7919#2 CGGCACGAGGACAANTNCAGTGCTGTTTTGTGTACGGTTTTGGCTTCAAGACGGTCGTTA 60 consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ---------------------------------------------------TTGCAACAG 9 consensus_7919#0 CAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGA---TG 477 consensus_7919#1 CGATTCCAGAACAGGTCGCTAGAAATGTCACCGATGGTACGGTCCAGCCCGCGGA---TG 129 consensus_7919#2 TGTGTGACGCTCCGCTAGCCTAAATTCCCGCGCCTTCGCCAGTGGAGCAGAAGAAGCACC 120 consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 CAGCAGCAGCAGCAACACATCGAAATGTCACCGATGGTACGGTCCAGCCCGCGGA---TG 66 consensus_7919#0 GGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAA 537 consensus_7919#1 GGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAA 189 consensus_7919#2 GAACTTCCGCGCAGTCGCAGACAGACCATGGNCCCTCGNACAGCTCCAGCAGCACGTCGC 180 consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 GGGCTCGGACGCCAGGGCATGGTCGAGACGACGTTCACCACGAACGTGACGGCGGCCGAA 126 consensus_7919#0 ACCGATCTCACAGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAA-------AC 590 consensus_7919#1 ACCGATCTCACGGTCGCTAAAATTAACTCCATGTTTCCCACCGTGCCGGAA-------AC 242 consensus_7919#2 AGCAGCATAACAGCGTTTGAAGGCATTAATCTGAGCAGAAGCGTGCAGTGA-------AA 233 consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ACCGATCTCACGGTCGCTAAAATTAACTCCATTGTTAGGAAAAGGCAGTGCTATTGATGA 186 consensus_7919#0 CCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCT 650 consensus_7919#1 CCACATCCGGATGCTGCTGAAGAAGTACTACAACCGTGAGGCGGTCGTAATAAGCGCCCT 302 consensus_7919#2 AGCATGTCCGAGCAAATGGAGCAAGTAGGGCTACCGCCCGGTTGGGATTGTAAATACGAT 293 consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 GTCCAACCCGGACGTATAAACGAGATGAAGTGAAATGACAGCTAGGGAAAGTGACAGATG 246 consensus_7919#0 GCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCA 710 consensus_7919#1 GCAGGTGGAGAAGCATCCGCTAACGACGCCCGGCCCGTACTCGACGCCACCGCTCGGCCA 362 consensus_7919#2 TCCAG--AACAGGTCGCTACTA-CTACGTGAACCCTGTTCACCAAAACGACGCAATGGGA 350 consensus_7919#4 -------------TCGCTGTCA-TTTCATCTGTCACATACACAA----GCTGTCATTTCA 42 consensus_7919#3 AAATGACAGGGAAACGGTTGCACGCGCTTCAAACCAGTA-GCGAGTGAAGCG-AGCAGCA 304 * * * * * * * * consensus_7919#0 CCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCT 770 consensus_7919#1 CCGGCCCTTCCACAACACGGCGATGGGCGTCGTGTCCGCGTTCCAGATGACGCCCGTGCT 422 consensus_7919#2 GGATCCGCGGGNCANAAGATACGCAAACAGCAAAACTNNAGCACCAAC--TTCACATCTC 408 consensus_7919#4 CTTCATCTCGTTTATACG-TCCGGGTTGGACTCATCAATAGCACTGCC--TTTTCCTAAC 99 consensus_7919#3 GGTGACACCGTTTTAAAGTTTTATTGCTATTTTATTTGGATT--TATTTGTATTTGTCTT 362 * consensus_7919#0 CGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAG 830 consensus_7919#1 CGGCGGGCGCAGTGAGATGTCCAGCTCGCGCACCGGCAGCCCGGTACCGCGTCCGGCCAG 482 consensus_7919#2 AAAACGATANCATTTTCCATGCAGCCAGTGCATGGNNCTCCCTATCATGTGTACCCCGCC 468 consensus_7919#4 AGGGAGGGAAT------------------------------------------------- 110 consensus_7919#3 CAGGAGAATAAATAGTTAAACTAAAAAAAA------------------------------ 392 * consensus_7919#0 CGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAA-CGGACCGGCGGACG 889 consensus_7919#1 CGGTGCCAGCGGCAGCTACGCCGGCGGATACGGATCGCCCCGGAAACGGACCGGCGGACG 542 consensus_7919#2 AGTAACTCGTTCTATCCA------------------------------------------ 486 consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 GG-TATCGCAGCT-CGCCGAAGCCCCACTCGTCGCCGAAGATGAAGCTGAGGTACATGAA 947 consensus_7919#1 GGGTATCGCAGCTTCGCCG----------------------------------------- 561 consensus_7919#2 ------------------------------------------------------------ consensus_7919#4 ------------------------------------------------------------ consensus_7919#3 ------------------------------------------------------------ consensus_7919#0 GAGCATCTTCCCGAAGGCGGAGGAAACGCTCATCCTGGACGTGCTGGCC 996 consensus_7919#1 ------------------------------------------------- consensus_7919#2 ------------------------------------------------- consensus_7919#4 ------------------------------------------------- consensus_7919#3 ------------------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||