These datas are free for academic use only, please contact me for any other use. Anopheles gambiae see consensus multiple alignment with clustalw Direct access to contigs :
consensusID : consensus_7923#0 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 994 fasta sequence [TAAAAACATGCCGGAACGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTACTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAGCGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAGGCGAA-CGACAGGAAGCAATCCAGCAGGGGCTGCCGGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGTTGTGGCAATGCGGAGGACTGCCAGGCAACCGCCGAGCAGAGCGCTTGAACAGTTTTGTCGGTTGAATTGTACAGAATCAGTTTTTTATTTCTTCGTTTTTTTATAGTCTTAATAGTGGCAGGATTATAAACAAACGTGTCCTTCTCTGACGTTGCAGTGAAAAAAAAAAAAAAATTTAAAAAAAAAAAG] [+] EMBL CNS0940B [TAAAAACATGCCGGAACGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTACTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAGCGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAGGCGAA CGACAGGAAGCAATCCAGCAGGGGCTGCCGGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGTTGTGGCAATGCGGAGGACTGCCAGGCAACCGCCGAGCAGAGCGCTTGAACAGTTTTGTCGGTTGAATTGTACAGAATCAGTTTTTTATTTCTTCGTTTTTTTATAGTCTTAATAGTGGCAGGATTATAAACAAACGTGTCCTTCTCTGACGTTGCAGTGAAAAAAAAAAAAAAATTTAAAAAAAAAAAG] [-] EMBL CNS0940C [ AGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGAAAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAGGCGAAGCGACAGGAAGCAATCCAGCAGGGGCTGCCGGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCAATGCGGAGGACTGCCAGGCAACCGCCGAGAAGAGCGGTTGAACAGTTTTGTCGGTTGAATTGTAAAGAAAAAGTTT ] consensusID : consensus_7923#1 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 4 consensus length = 931 fasta sequence [GCCGCCCACG-CGTCCG--CGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGC-AAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAGGCGAAGCGG-CTGGAAGCAATCCAGCAGGGGCTGCCGTGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCCAAGTGTGTAAAGCAGCTGCTGCGCATGTACACGCTCAACCGGCGCTCGGTTCGCCCGGTGCCGCTGCATTTCGTCGGGATCGAACCGGGCGGTGCGGTCGAGCGGCATCTCGCCCGC] [+] EMBL BM589824 [ CCGCCCACG CGTCCG CGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGC AAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAGGCGAAGCGG CTGGAAGCAATC ] [+] EMBL AL932900 [gaatCCCNCGAGGTCAGAACGCTTTTTTGCCC AAAGGTAGTGTATCGATTTTGTAACAGGAATCCGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCCACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAAAGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGG ACCCTCTCCAAGCGGCAGCGC AAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAA ] [+] EMBL CNS096MA [ CGTTATTTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCGAGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTGCACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCAATACTGCCAAATAAAAGCGATACCTGTT ] [+] EMBL CNS08S52 [ TTAGGGATGAA CCGCCATCCGGCAGGAAACGACAACGATGGAGACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACCGTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGCGACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAAGCTGCTCAAGCTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAGGCGAA CGGCCTGGAAGCAATCCAGCAGGGGCTGCCGTGTGCGCACCGGTCCGAGCCGGAAGGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCTGAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCCAAGTGTGTAAAGCAGCTGCTGCGCATGTACACGCTCAACCGGCGCTCGGTTCGCCCGGTGCCGCTGCATTTCGTCGGGATCGAACCGGGCGGTGCGGTCGAGCGGCATCTCGCCCGC] consensusID : consensus_7923#2 NCBI blastX ! send the sequence to the NCBI site ! NCBI blastN ! send the sequence to the NCBI site ! Sequences nbr = 2 consensus length = 229 fasta sequence [CGAGAAATAAAAAACTGATTCTGTACAATTCAACCGACAAAACTGTTCAACCGCTCTGCTCGGCGGTTGCCTGGCAGTCCTCCGCATTGCCACTCTCCGGCGCGTTCGCACCATCCTGCGTGGCCACCGGCACCGTCTTCGGCGTGACGCCCTTGCGGGCCGGCAGCGCCTCCAGCAGCGTCTGCTGCCACTCCTTGCCCATGTGCACGTTCAGCAGTATCTCGAATTC] [+] EMBL CNS096MB [CGAGAAATAAAAAACTGATTCTGTACAATTCAACCGACAAAACTGTTCAACCGCTCTGCTCGGCGGTTGCCTGGCAGTCCTCCGCATTGCCACTCTCCGGCGCGTTCGCACCATCCTGCGTGGCCACCGGCACCGTCTTCGGCGTGACGCCCTTGCGGGCCGGCAGCGCCTCCAGCAGCGTCTGCTGCCACTCCTTGCCCATGTGCACGTTCAGCAGTATCTCGAATTC] [+] EMBL CNS08S53 [ ACCGACAAAACTGTTCAACCGCTCTGCTCGGCGGTTGCCTGGCAGTCCTCCGCATTGCCACTCTCCGGCGCGTTCGCACCATCCTGCGTGGCCACCGGCACCGTCTTCGGCGTGACGCCCTTGCGGGCCGGCAGC ] consensus multiple alignement with clustalw CLUSTAL W (1.82) multiple sequence alignment consensus_7923#0 TAAAAACATGCCGGAACGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAA 60 consensus_7923#1 GCCGCCCACGCGTCCGCGCTTTTTTGCCCAAAAGGTAGTGTATCGATTTTGTAACAGGAA 60 consensus_7923#2 ----------------------------CGAGAAATAAAAAACTGATTCTGTACAATTCA 32 * * * ** * **** **** * * consensus_7923#0 TCCGTTAT--TTCCTTGCTTACTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCG 118 consensus_7923#1 TCCGTTAT--TTCCTTGCTTGCTCTAACTCTAAGGCGCCCTAACAATCGGTGCAGCGGCG 118 consensus_7923#2 ACCGACAAAACTGTTCAACCGCTCTG-CTCGGCGGTTGCCTGGCAGTC--CTCCGCATTG 89 *** * * * **** *** ** *** ** ** * ** * consensus_7923#0 AGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTG 178 consensus_7923#1 AGAACGAGCGGCGTAAACATAAACACCATCCTGAACCCTTTCCCAGAGGCCGGCCGCGTG 178 consensus_7923#2 CCACTCTCCGGCG----CGTTCGCACCATCCTG--CGTGGCCACCGGCACCGTCTTCG-- 141 * ***** * * ********** * * * * *** * ** consensus_7923#0 CACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCA 238 consensus_7923#1 CACGTGTGTAATTTTGTAGCTGCCTGCGCCACAGAAGAGCAACGAAACGAACGAGAACCA 238 consensus_7923#2 -GCGTGACGCCCTTGCGGGCCGGCAGCGCCTCC----AGCAGCGT------CTGCTGCCA 190 **** ** ** * * ***** * **** ** * *** consensus_7923#0 ATACTGCCAAATAAAAGCGAT-ACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCC 297 consensus_7923#1 ATACTGCCAAATAAAAGCGAT-ACCTGTTTCGCAAGTACTACAGGATGATATGTAGGGCC 297 consensus_7923#2 CTCCTTGCCCATGTGCACGTTCAGCAGTATCTCGAATTC--------------------- 229 * ** * ** ** * * * ** ** * * * * consensus_7923#0 ACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAA 357 consensus_7923#1 ACATTAGCAACGAAACAAGCTCTGTAACGACAAGAAACAAAGGCCCCCAGAATGGAAGAA 357 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 AGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAGCGACAACGATGGAG 417 consensus_7923#1 AGTTTATCTAATGCTGTTAGGGATGAACCCGCCATCCGGCAGGAAACGACAACGATGGAG 417 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 ACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACC 477 consensus_7923#1 ACAGACTGTCCAAAAGATGAGCAGTGCCCGATAGTACCCGAGCCGGACAAGCTCCCGACC 477 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGC 537 consensus_7923#1 GTGCCGGAAGTGGTGCAAAGTCAATCCACACCCGAAGCCCCACCGGAAGCCGACCGAAGC 537 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAG 597 consensus_7923#1 GACGAACCGGACAAACCGAACGGCACCCTCTCCAAGCGGCAGCGCAAAAAGCTGCTCAAG 597 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 CTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAAGAAAAGATGAAG 657 consensus_7923#1 CTAGAGAATTGGGAGCAGCGGAAAAAGGAAAAGCGCCAGAAGGAGAAGGAAAAGATGAAG 657 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GCGAA-CGACAGGAAGCAATCCAGCAGGGGCTGCCG-GTGCGCACCGGTCCGAGCCGGAA 715 consensus_7923#1 GCGAAGCGGCTGGAAGCAATCCAGCAGGGGCTGCCGTGTGCGCACCGGTCCGAGCCGGAA 717 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCT 775 consensus_7923#1 GGAGCTGAAGCGGCGAAAGGTGAGCTACGGCGAGGCGACGATCGAGGTCGCTGTCGACCT 777 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GAGCTTCGACCAGCTGATGATCGACAAGGTTGTGGCAATGCGGAGGACTGCCAGGCAACC 835 consensus_7923#1 GAGCTTCGACCAGCTGATGATCGACAAGGATGTGGCCAAGTG------TGTAAAGCAGCT 831 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GCCGAGCAGAGCGCTTGAACAGTTTTGTCGGTTGAATTGTACAGAATCAGTTTTTTATTT 895 consensus_7923#1 GCT-------GCGCATGTACA-------CGCTCAACCGGCGCTCGGTTCGCCCGGTGCCG 877 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 CTTCGTTTTTTTATAGTCTTAATAGTGGCAGGATTATAAACAAACGTGTCCTTCTCTGAC 955 consensus_7923#1 CTGCATTTCGTCGGGATCGAACCG--GGCGGTGCGGTCGAGCGGCATCTCGCCCGC---- 931 consensus_7923#2 ------------------------------------------------------------ consensus_7923#0 GTTGCAGTGAAAAAAAAAAAAAAATTTAAAAAAAAAAAG 994 consensus_7923#1 --------------------------------------- consensus_7923#2 --------------------------------------- |
Copyright Wed Dec 3 12:11:56 CET 2003 Hubert Wassner (hubert.wassner@noos.fr) | ||||